Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 0.0e+00 1647.9 819 100.0
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 0.0e+00 1526.5 819 92.7
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 0.0e+00 1269.6 836 76.4
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 0.0e+00 1246.1 840 74.8
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 0.0e+00 1181.0 828 72.0
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 0.0e+00 1179.1 830 71.9
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 0.0e+00 1146.3 822 71.0
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 0.0e+00 1144.4 825 70.5
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 0.0e+00 1128.6 828 70.0
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 0.0e+00 1081.2 836 65.3
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 4.3e-310 1067.8 833 64.7
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 9.8e-307 1056.6 874 62.4
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 1.1e-305 1053.1 835 63.6
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 2.4e-305 1052.0 835 63.5
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 1.6e-304 1049.3 840 63.0
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 6.1e-301 1037.3 838 63.5
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 9.8e-299 1030.0 831 62.8
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 2.8e-298 1028.5 836 62.1
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 4.9e-298 1027.7 834 62.0
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 8.3e-298 1026.9 836 62.8
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 5.4e-297 1024.2 828 62.7
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 1.0e-295 1020.0 830 62.3
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 8.6e-295 1016.9 837 62.2
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 7.3e-294 1013.8 832 62.3
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 9.5e-294 1013.4 853 61.4
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 1.2e-293 1013.1 835 61.2
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 2.3e-292 1008.8 835 61.3
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 5.2e-292 1007.7 834 62.0
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 1.2e-291 1006.5 837 60.7
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 5.8e-291 1004.2 834 61.4
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 1.4e-289 999.6 840 61.1
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 1.9e-289 999.2 846 61.8
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 6.0e-288 994.2 847 61.2
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 3.9e-287 991.5 832 60.1
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 2.5e-286 988.8 836 59.7
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 2.5e-286 988.8 837 59.6
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 8.0e-285 983.8 835 59.9
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 2.3e-284 982.2 837 59.1
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 4.0e-284 981.5 840 59.6
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 4.0e-284 981.5 838 59.9
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 5.2e-284 981.1 823 61.6
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 2.6e-283 978.8 843 60.0
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 9.8e-283 976.9 833 58.9
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 2.9e-282 975.3 834 61.3
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 6.4e-282 974.2 834 59.4
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 1.1e-281 973.4 822 59.0
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 1.1e-281 973.4 826 62.1
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 6.6e-279 964.1 837 59.6
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 1.5e-278 963.0 840 58.6
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 5.6e-278 961.1 836 59.6
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 7.3e-278 960.7 826 60.9
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 9.5e-278 960.3 833 58.5
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 1.2e-277 959.9 831 59.0
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 8.1e-277 957.2 836 59.4
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 8.9e-276 953.7 840 59.8
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 7.5e-275 950.7 837 60.2
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 9.9e-275 950.3 841 62.1
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 2.2e-274 949.1 836 59.2
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 6.4e-274 947.6 835 58.3
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.1e-273 946.8 840 58.8
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.4e-273 946.4 846 58.7
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.4e-273 945.7 840 59.3
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 5.4e-273 944.5 840 58.7
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 5.4e-273 944.5 826 58.6
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 9.2e-273 943.7 842 58.9
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 2.1e-272 942.6 817 61.9
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 1.0e-271 940.3 841 58.9
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 1.3e-271 939.9 835 57.6
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.7e-271 939.5 840 58.8
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 2.3e-271 939.1 841 57.6
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 2.3e-271 939.1 827 58.8
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 3.9e-271 938.3 836 58.9
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 1.5e-270 936.4 816 58.5
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.9e-270 936.0 870 56.2
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 7.3e-270 934.1 818 59.8
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 3.6e-269 931.8 834 57.1
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 5.2e-268 927.9 836 58.1
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 1.5e-267 926.4 837 57.6
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 2.0e-267 926.0 853 56.6
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 2.6e-267 925.6 893 55.8
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 3.4e-267 925.2 837 57.5
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 9.9e-267 923.7 836 57.5
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 9.9e-267 923.7 836 57.7
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 9.9e-267 923.7 836 57.7
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 1.3e-266 923.3 839 58.0
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 2.2e-266 922.5 818 58.6
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 2.2e-266 922.5 840 57.9
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 2.9e-266 922.2 840 58.0
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 4.9e-266 921.4 836 57.5
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 6.4e-266 921.0 836 57.4
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 3.2e-265 918.7 835 56.5
Oeu014279.1 Olea europaea HOM05D003723 ORTHO05D004306 1.2e-264 916.8 767 61.7
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 2.7e-264 915.6 826 57.7
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.7e-264 915.6 840 57.5
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 6.0e-264 914.4 707 65.5
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 3.0e-263 912.1 834 57.1
Hund05292 Selenicereus undatus HOM05D003723 ORTHO05D004306 3.0e-263 912.1 747 61.6
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 3.9e-263 911.8 773 60.5
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 5.1e-263 911.4 831 56.8
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 2.5e-262 909.1 829 56.2
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 3.3e-262 908.7 834 59.0
SalBow2G1921 Salvia bowleyana HOM05D003723 ORTHO05D004306 3.3e-262 908.7 793 59.4
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 4.3e-262 908.3 827 56.3
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 5.6e-262 907.9 830 56.9
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 5.3e-260 901.4 829 56.8
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 9.9e-259 897.1 828 57.1
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 1.3e-258 896.7 828 56.9
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 3.8e-258 895.2 729 63.0
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 8.4e-258 894.0 837 55.4
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 8.4e-258 894.0 838 56.6
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 5.4e-257 891.3 829 56.2
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 7.1e-257 891.0 831 55.2
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 9.3e-257 890.6 827 56.2
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 2.1e-256 889.4 833 55.7
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 7.8e-256 887.5 866 55.0
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 8.7e-255 884.0 822 55.2
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 2.5e-254 882.5 848 55.7
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 9.6e-254 880.6 830 55.8
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 1.1e-252 877.1 829 55.9
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 1.1e-252 877.1 838 53.9
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 3.1e-252 875.5 731 60.7
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 1.2e-251 873.6 816 55.1
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 4.5e-251 871.7 841 54.5
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 1.1e-249 867.1 833 56.4
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 2.7e-248 862.4 813 55.1
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 2.7e-248 862.4 815 54.8
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 3.5e-248 862.1 809 55.4
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 1.8e-247 859.8 829 56.9
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.8e-247 859.8 840 54.8
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 6.7e-247 857.8 866 54.2
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 1.1e-246 857.1 776 57.1
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 1.9e-246 856.3 831 56.0
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 1.3e-245 853.6 837 54.7
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 2.4e-244 849.4 821 55.1
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 1.8e-239 833.2 639 65.7
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 2.3e-239 832.8 848 52.8
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 6.2e-237 824.7 751 55.8
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 1.1e-236 823.9 822 53.2
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 1.8e-231 806.6 834 51.9
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 5.3e-228 795.0 829 51.6
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 9.0e-228 794.3 830 52.0
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 8.2e-213 744.6 699 54.5
Ca_23258_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 8.8e-207 724.5 721 56.4
Lsat_1_v5_gn_1_1120 Lactuca sativa HOM05D003723 ORTHO05D004306 3.3e-169 599.7 586 55.5
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 2.2e-165 587.0 910 38.0
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 5.4e-156 555.8 923 36.6
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 5.6e-153 545.8 434 63.6
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 6.2e-152 542.3 843 39.1
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 2.3e-146 523.9 929 35.3
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 2.0e-134 484.2 908 34.8
CDE04G2329 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 1.1e-121 441.8 408 54.9
DCAR_032227 Daucus carota HOM05D003723 ORTHO05D004306 1.4e-116 424.9 452 52.2
AagrBONN_evm.TU.Sc2ySwM_344.864 Anthoceros agrestis HOM05D003723 ORTHO05D004306 1.4e-108 398.3 643 37.9
Oeu036976.1 Olea europaea HOM05D003723 ORTHO05D004306 1.0e-106 392.1 322 62.4
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 1.4e-106 391.7 498 44.2
Actinidia19301 Actinidia chinensis HOM05D003723 ORTHO05D004306 2.1e-91 341.3 300 59.3
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 9.7e-89 332.4 254 63.4
Pp3c18_6690 Physcomitrium patens HOM05D003723 ORTHO05D004306 7.2e-76 289.7 696 31.6
Lsat_1_v5_gn_1_440 Lactuca sativa HOM05D003723 ORTHO05D004306 2.1e-75 288.1 257 58.8
SEGI_10786 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 4.7e-75 287.0 315 48.3
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 5.4e-71 273.5 224 58.9
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 1.1e-68 265.8 251 54.6
Dinv39213 Davidia involucrata HOM05D003723 ORTHO05D004306 2.5e-60 238.0 153 75.8
MCO10G249 Micromonas commoda HOM05D003723 ORTHO05D004306 1.4e-55 222.2 945 24.9
Oeu053086.3 Olea europaea HOM05D003723 ORTHO05D004306 4.6e-54 217.2 261 49.8
TAR376G0468 Trochodendron aralioides HOM05D003723 ORTHO05D004306 2.8e-43 181.4 117 76.9
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 3.1e-42 177.9 196 49.0
HanXRQChr14g0443971 Helianthus annuus HOM05D003723 ORTHO05D004306 6.0e-38 163.7 151 58.9
TAR376G0760 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.1e-36 159.5 111 66.7
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 3.6e-35 154.5 197 43.7
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 2.4e-34 151.8 196 43.4
Cre13.g606850 Chlamydomonas reinhardtii HOM05D003723 ORTHO05D004306 2.0e-33 148.7 900 22.9
TAR376G0365 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.4e-31 142.5 109 62.4
Migut.N02791 Erythranthe guttata HOM05D003723 ORTHO05D004306 5.4e-31 140.6 103 65.0
PRCOL_00004412 Prasinoderma coloniale HOM05D003723 ORTHO05D004306 1.6e-30 139.0 465 27.5
Cfa027112 Carpinus fangiana HOM05D003723 ORTHO05D004306 4.0e-26 124.4 664 22.9
Psat7g031120 Pisum sativum HOM05D003723 ORTHO05D004306 5.4e-23 114.0 93 67.7
HanXRQChr15g0495401 Helianthus annuus HOM05D003723 ORTHO05D004306 4.6e-22 110.9 134 46.3
CSS0002287 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 3.1e-18 98.2 104 46.2
CSS0021932 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 5.3e-18 97.4 104 46.2
CSS0044410 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 5.3e-18 97.4 104 45.2
CSS0047227 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.3e-16 92.8 104 45.2
CSS0041779 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.0e-13 83.2 101 40.6
CSS0003704 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.2e-06 59.7 104 35.6
AagrBONN_evm.TU.Sc2ySwM_344.667 Anthoceros agrestis HOM05D021458 ORTHO05D023500 4.6e-06 57.8 116 30.2


User provided reference genes

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