Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G226902 Glycine max HOM05D003066 ORTHO05D004162 6.0e-73 277.3 132 100.0
Glyma.17G228800 Glycine max HOM05D003066 ORTHO05D004162 5.1e-72 274.2 132 99.2
VMungo0647G0915 Vigna mungo HOM05D003066 ORTHO05D004162 4.7e-70 267.7 132 96.2
Glyma.14G094700 Glycine max HOM05D003066 ORTHO05D004162 1.4e-69 266.2 132 95.5
Phvul.001G035500 Phaseolus vulgaris HOM05D003066 ORTHO05D004162 3.1e-69 265.0 132 94.7
CSS0003286 Camellia sinensis var. sinensis HOM05D003066 ORTHO05D004162 1.2e-68 263.1 132 93.9
TPR.G13011 Trifolium pratense HOM05D003066 ORTHO05D004162 2.6e-68 261.9 132 93.2
Medtr1g016230 Medicago truncatula HOM05D003066 ORTHO05D004162 3.4e-68 261.5 132 93.2
Actinidia18185 Actinidia chinensis HOM05D003066 ORTHO05D004162 4.4e-68 261.2 132 93.2
CSS0010005 Camellia sinensis var. sinensis HOM05D003066 ORTHO05D004162 5.8e-68 260.8 132 93.2
arahy.Tifrunner.gnm1.ann1.9IV7G6 Arachis hypogaea HOM05D003066 ORTHO05D004162 7.6e-68 260.4 132 92.4
arahy.Tifrunner.gnm1.ann1.W9U8CY Arachis hypogaea HOM05D003066 ORTHO05D004162 7.6e-68 260.4 132 92.4
Cpa.g.sc7.178 Carica papaya HOM05D003066 ORTHO05D004162 1.7e-67 259.2 132 91.7
Ca_13165_v3 Cicer arietinum L. HOM05D003066 ORTHO05D004162 2.2e-67 258.8 132 92.4
Psat6g020400 Pisum sativum HOM05D003066 ORTHO05D004162 2.2e-67 258.8 132 91.7
Rhsim11G0044200 Rhododendron simsii HOM05D003066 ORTHO05D004162 2.9e-67 258.5 132 92.4
Manes.16G080300 Manihot esculenta HOM05D003066 ORTHO05D004162 3.8e-67 258.1 132 92.4
Lj5g0020573 Lotus japonicus HOM05D003066 ORTHO05D004162 4.9e-67 257.7 132 93.2
MELO3C010754.2 Cucumis melo HOM05D003066 ORTHO05D004162 6.4e-67 257.3 132 92.4
Hma1.2p1_0482F.1_g162430 Hydrangea macrophylla HOM05D003066 ORTHO05D004162 6.4e-67 257.3 132 92.4
TAR626G0016 Trochodendron aralioides HOM05D003066 ORTHO05D004162 6.4e-67 257.3 132 90.9
Nn8g38884 Nelumbo nucifera HOM05D003066 ORTHO05D004162 1.1e-66 256.5 132 92.4
TWI32G0839 Tripterygium wilfordii HOM05D003066 ORTHO05D004162 1.4e-66 256.1 132 90.9
THA.LOC104799166 Tarenaya hassleriana HOM05D003066 ORTHO05D004162 2.4e-66 255.4 132 90.9
MBI01_g09957_MAGBIO Magnolia biondii HOM05D003066 ORTHO05D004162 3.2e-66 255.0 131 90.1
Rhsim07G0142300 Rhododendron simsii HOM05D003066 ORTHO05D004162 3.2e-66 255.0 129 91.5
Sed0010471 Sechium edule HOM05D003066 ORTHO05D004162 7.1e-66 253.8 132 90.2
CSS0037920 Camellia sinensis var. sinensis HOM05D003066 ORTHO05D004162 9.3e-66 253.4 132 89.4
COL.COLO4_21057 Corchorus olitorius HOM05D003066 ORTHO05D004162 9.3e-66 253.4 132 89.4
Lalb_Chr14g0367671 Lupinus albus HOM05D003066 ORTHO05D004162 9.3e-66 253.4 132 90.2
Nitab4.5_0001367g0020 Nicotiana tabacum HOM05D003066 ORTHO05D004162 9.3e-66 253.4 132 89.4
Nitab4.5_0003627g0010 Nicotiana tabacum HOM05D003066 ORTHO05D004162 9.3e-66 253.4 132 89.4
TWI34G1165 Tripterygium wilfordii HOM05D003066 ORTHO05D004162 9.3e-66 253.4 132 90.2
vmacro00142 Vaccinium macrocarpon HOM05D003066 ORTHO05D004162 1.2e-65 253.1 129 90.7
ClCG08G017010 Citrullus lanatus HOM05D003066 ORTHO05D004162 1.6e-65 252.7 132 90.2
Prupe.1G412100 Prunus persica HOM05D003066 ORTHO05D004162 1.6e-65 252.7 132 90.2
TAR383G0156 Trochodendron aralioides HOM05D003066 ORTHO05D004162 1.6e-65 252.7 132 89.4
Glyma.04G051200 Glycine max HOM05D003066 ORTHO05D004162 2.1e-65 252.3 132 89.4
CSS0005439 Camellia sinensis var. sinensis HOM05D003066 ORTHO05D004162 2.7e-65 251.9 132 88.6
QL02p001223 Quercus lobata HOM05D003066 ORTHO05D004162 2.7e-65 251.9 131 88.5
Sabra06G0177800 Salix brachista HOM05D003066 ORTHO05D004162 2.7e-65 251.9 132 90.2
Aa31LG5G9680 Aethionema arabicum HOM05D003066 ORTHO05D004162 3.5e-65 251.5 131 90.1
MBI04_g34129_MAGBIO Magnolia biondii HOM05D003066 ORTHO05D004162 3.5e-65 251.5 132 90.2
Potri.006G229300 Populus trichocarpa HOM05D003066 ORTHO05D004162 3.5e-65 251.5 132 90.2
SalBow1G0202 Salvia bowleyana HOM05D003066 ORTHO05D004162 3.5e-65 251.5 132 90.2
Cfa017953 Carpinus fangiana HOM05D003066 ORTHO05D004162 4.6e-65 251.1 132 87.9
GSVIVG01035408001 Vitis vinifera HOM05D003066 ORTHO05D004162 4.6e-65 251.1 132 89.4
Glyma.06G052100 Glycine max HOM05D003066 ORTHO05D004162 6.0e-65 250.8 132 88.6
Dinv27984 Davidia involucrata HOM05D003066 ORTHO05D004162 7.8e-65 250.4 132 89.4
Gohir.A05G042300 Gossypium hirsutum HOM05D003066 ORTHO05D004162 7.8e-65 250.4 132 88.6
Gohir.A06G089300 Gossypium hirsutum HOM05D003066 ORTHO05D004162 7.8e-65 250.4 132 89.4
Gorai.010G101200 Gossypium raimondii HOM05D003066 ORTHO05D004162 7.8e-65 250.4 132 89.4
Lalb_Chr23g0267761 Lupinus albus HOM05D003066 ORTHO05D004162 7.8e-65 250.4 132 89.4
Solyc08g065220.3 Solanum lycopersicum HOM05D003066 ORTHO05D004162 7.8e-65 250.4 128 88.3
Sopen08g018830 Solanum pennellii HOM05D003066 ORTHO05D004162 7.8e-65 250.4 128 88.3
PGSC0003DMG400029938 Solanum tuberosum HOM05D003066 ORTHO05D004162 7.8e-65 250.4 128 88.3
MSTRG.14054 Avicennia marina HOM05D003066 ORTHO05D004162 1.0e-64 250.0 132 87.9
CAN.G208.91 Capsicum annuum HOM05D003066 ORTHO05D004162 1.0e-64 250.0 128 88.3
Eucgr.C03047 Eucalyptus grandis HOM05D003066 ORTHO05D004162 1.0e-64 250.0 132 88.6
Atru.chr7.1061 Acer truncatum HOM05D003066 ORTHO05D004162 1.3e-64 249.6 132 88.6
Eucgr.C00646 Eucalyptus grandis HOM05D003066 ORTHO05D004162 1.3e-64 249.6 132 87.1
HPP92_006466 Vanilla planifolia HOM05D003066 ORTHO05D004162 1.3e-64 249.6 132 88.6
Gohir.D06G087600 Gossypium hirsutum HOM05D003066 ORTHO05D004162 1.7e-64 249.2 132 88.6
Duzib187G0606 Durio zibethinus HOM05D003066 ORTHO05D004162 2.3e-64 248.8 132 87.9
Gohir.D05G044000 Gossypium hirsutum HOM05D003066 ORTHO05D004162 2.3e-64 248.8 132 87.9
CAN.G117.1 Capsicum annuum HOM05D003066 ORTHO05D004162 3.0e-64 248.4 128 87.5
Cc08_g10590 Coffea canephora HOM05D003066 ORTHO05D004162 3.0e-64 248.4 132 86.4
Duzib168G0564 Durio zibethinus HOM05D003066 ORTHO05D004162 3.0e-64 248.4 132 87.1
SGA_v2.0_scaffold163G38030 Striga asiatica HOM05D003066 ORTHO05D004162 3.0e-64 248.4 132 87.1
THA.LOC104803730 Tarenaya hassleriana HOM05D003066 ORTHO05D004162 3.0e-64 248.4 132 88.6
Duzib150G0748 Durio zibethinus HOM05D003066 ORTHO05D004162 5.1e-64 247.7 132 87.1
Thecc.09G053700 Theobroma cacao HOM05D003066 ORTHO05D004162 5.1e-64 247.7 132 87.1
PGR031G0611 Punica granatum HOM05D003066 ORTHO05D004162 6.6e-64 247.3 132 87.9
MD08G1061500 Malus domestica HOM05D003066 ORTHO05D004162 8.7e-64 246.9 132 89.4
CANSAT25G3853 Cannabis sativa HOM05D003066 ORTHO05D004162 1.1e-63 246.5 132 87.9
CiPaw.15G039000 Carya illinoinensis HOM05D003066 ORTHO05D004162 1.1e-63 246.5 132 87.9
MD15G1060200 Malus domestica HOM05D003066 ORTHO05D004162 1.1e-63 246.5 132 87.9
Oeu003985.1 Olea europaea HOM05D003066 ORTHO05D004162 1.1e-63 246.5 132 87.1
Peaxi162Scf00477g00214 Petunia axillaris HOM05D003066 ORTHO05D004162 1.9e-63 245.7 133 87.2
Migut.E01566 Erythranthe guttata HOM05D003066 ORTHO05D004162 5.6e-63 244.2 132 87.1
Lj7C275T3 Lonicera japonica HOM05D003066 ORTHO05D004162 5.6e-63 244.2 132 86.4
Os01g0711400 Oryza sativa ssp. japonica HOM05D003066 ORTHO05D004162 5.6e-63 244.2 132 87.1
Os06g0611900 Oryza sativa ssp. japonica HOM05D003066 ORTHO05D004162 5.6e-63 244.2 132 87.1
Ciclev10007310m.g Citrus clementina HOM05D003066 ORTHO05D004162 7.3e-63 243.8 132 85.6
Sp4g05960 Schrenkiella parvula HOM05D003066 ORTHO05D004162 7.3e-63 243.8 131 87.8
AT2G26080 Arabidopsis thaliana HOM05D003066 ORTHO05D004162 9.6e-63 243.4 129 88.4
Thhalv10001891m.g Eutrema salsugineum HOM05D003066 ORTHO05D004162 9.6e-63 243.4 131 87.0
Hund19452 Selenicereus undatus HOM05D003066 ORTHO05D004162 1.3e-62 243.0 132 86.4
Aqoxy7G01226 Aquilegia oxysepala HOM05D003066 ORTHO05D004162 1.6e-62 242.7 132 85.6
Ah.10g034390 Amaranthus hybridus HOM05D003066 ORTHO05D004162 2.8e-62 241.9 132 86.4
CDE07G0857 Ceratophyllum demersum HOM05D003066 ORTHO05D004162 2.8e-62 241.9 133 85.7
AL4G18230 Arabidopsis lyrata HOM05D003066 ORTHO05D004162 3.6e-62 241.5 129 87.6
CARHR114810 Cardamine hirsuta HOM05D003066 ORTHO05D004162 3.6e-62 241.5 129 87.6
CDE06G2405 Ceratophyllum demersum HOM05D003066 ORTHO05D004162 3.6e-62 241.5 133 85.7
DCAR_003129 Daucus carota HOM05D003066 ORTHO05D004162 3.6e-62 241.5 132 83.3
FAN20G2891 Fragaria x ananassa HOM05D003066 ORTHO05D004162 3.6e-62 241.5 132 87.1
QL02p062818 Quercus lobata HOM05D003066 ORTHO05D004162 3.6e-62 241.5 131 84.7
FAN15G2565 Fragaria x ananassa HOM05D003066 ORTHO05D004162 4.8e-62 241.1 132 87.1
Hund03339 Selenicereus undatus HOM05D003066 ORTHO05D004162 4.8e-62 241.1 132 85.6
GSVIVG01015211001 Vitis vinifera HOM05D003066 ORTHO05D004162 4.8e-62 241.1 133 88.0
CARHR241020 Cardamine hirsuta HOM05D003066 ORTHO05D004162 6.2e-62 240.7 129 86.8
AL7G18660 Arabidopsis lyrata HOM05D003066 ORTHO05D004162 8.1e-62 240.4 129 86.8
AT4G33010 Arabidopsis thaliana HOM05D003066 ORTHO05D004162 8.1e-62 240.4 129 86.8
MSTRG.1683 Avicennia marina HOM05D003066 ORTHO05D004162 8.1e-62 240.4 129 85.3
FAN27G1891 Fragaria x ananassa HOM05D003066 ORTHO05D004162 8.1e-62 240.4 132 86.4
vmacro14247 Vaccinium macrocarpon HOM05D003066 ORTHO05D004162 8.1e-62 240.4 154 77.9
Zm00001eb406880 Zea mays HOM05D003066 ORTHO05D004162 8.1e-62 240.4 131 85.5
EL10Ac2g03886 Beta vulgaris HOM05D003066 ORTHO05D004162 1.1e-61 240.0 129 85.3
FvH4_2g31940 Fragaria vesca HOM05D003066 ORTHO05D004162 1.1e-61 240.0 132 86.4
FAN24G0169 Fragaria x ananassa HOM05D003066 ORTHO05D004162 1.1e-61 240.0 132 86.4
AUR62022077 Chenopodium quinoa HOM05D003066 ORTHO05D004162 3.1e-61 238.4 132 83.3
Thhalv10024257m.g Eutrema salsugineum HOM05D003066 ORTHO05D004162 3.1e-61 238.4 129 86.0
Lsat_1_v5_gn_3_24441 Lactuca sativa HOM05D003066 ORTHO05D004162 3.1e-61 238.4 132 85.6
Sp7g30770 Schrenkiella parvula HOM05D003066 ORTHO05D004162 3.1e-61 238.4 131 85.5
unitig_749.g13830 Utricularia gibba HOM05D003066 ORTHO05D004162 3.1e-61 238.4 131 83.2
HanXRQChr17g0538191 Helianthus annuus HOM05D003066 ORTHO05D004162 5.3e-61 237.7 132 84.8
Migut.A00136 Erythranthe guttata HOM05D003066 ORTHO05D004162 6.9e-61 237.3 132 84.1
AUR62009150 Chenopodium quinoa HOM05D003066 ORTHO05D004162 9.0e-61 236.9 132 82.6
ECA246G1238 Erigeron canadensis HOM05D003066 ORTHO05D004162 9.0e-61 236.9 132 84.8
ATR0749G006 Amborella trichopoda HOM05D003066 ORTHO05D004162 1.2e-60 236.5 132 82.6
MD08G1061400 Malus domestica HOM05D003066 ORTHO05D004162 1.5e-60 236.1 132 85.6
PSO210G2602 Papaver somniferum HOM05D003066 ORTHO05D004162 2.0e-60 235.7 132 84.1
PSO210G3975 Papaver somniferum HOM05D003066 ORTHO05D004162 2.0e-60 235.7 132 84.1
RcHm_v2.0_Chr6g0310901 Rosa chinensis HOM05D003066 ORTHO05D004162 2.0e-60 235.7 129 85.3
Lsat_1_v5_gn_5_45900 Lactuca sativa HOM05D003066 ORTHO05D004162 2.6e-60 235.3 132 84.8
HanXRQChr13g0410471 Helianthus annuus HOM05D003066 ORTHO05D004162 5.8e-60 234.2 132 84.1
VMungo1309G0513 Vigna mungo HOM05D003066 ORTHO05D004162 5.8e-60 234.2 132 82.6
HanXRQChr06g0173861 Helianthus annuus HOM05D003066 ORTHO05D004162 9.9e-60 233.4 132 83.3
unitig_26.g9798 Utricularia gibba HOM05D003066 ORTHO05D004162 2.9e-59 231.9 133 82.0
Carub.0004s0590 Capsella rubella HOM05D003066 ORTHO05D004162 1.9e-58 229.2 129 84.5
Phvul.009G077400 Phaseolus vulgaris HOM05D003066 ORTHO05D004162 1.9e-58 229.2 118 88.1
ECA240G4675 Erigeron canadensis HOM05D003066 ORTHO05D004162 2.4e-58 228.8 132 82.6
Carub.0007s0747 Capsella rubella HOM05D003066 ORTHO05D004162 4.2e-58 228.0 129 83.7
SEGI_37657 Sequoiadendron giganteum HOM05D003066 ORTHO05D004162 5.4e-58 227.6 131 80.9
BcaC09g52098 Brassica carinata HOM05D003066 ORTHO05D004162 4.6e-57 224.6 129 80.6
BcaNung07090 Brassica carinata HOM05D003066 ORTHO05D004162 4.6e-57 224.6 129 80.6
A01p05180 Brassica napus HOM05D003066 ORTHO05D004162 4.6e-57 224.6 129 80.6
C01p05670 Brassica napus HOM05D003066 ORTHO05D004162 4.6e-57 224.6 129 80.6
BolC1t00546H Brassica oleracea HOM05D003066 ORTHO05D004162 4.6e-57 224.6 129 80.6
BraA01t00501Z Brassica rapa HOM05D003066 ORTHO05D004162 4.6e-57 224.6 129 80.6
Potri.018G053720 Populus trichocarpa HOM05D003066 ORTHO05D004162 3.7e-54 214.9 123 85.4
Pp3c16_4520 Physcomitrium patens HOM05D003066 ORTHO05D004162 9.0e-53 210.3 132 75.8
Pp3c16_4550 Physcomitrium patens HOM05D003066 ORTHO05D004162 9.0e-53 210.3 132 75.8
Pp3c27_5030 Physcomitrium patens HOM05D003066 ORTHO05D004162 1.2e-52 209.9 132 77.3
Lj7A271T27 Lonicera japonica HOM05D003066 ORTHO05D004162 3.8e-51 204.9 132 75.0
Actinidia18189 Actinidia chinensis HOM05D003066 ORTHO05D004162 6.4e-51 204.1 105 92.4
SEGI_16222 Sequoiadendron giganteum HOM05D003066 ORTHO05D004162 2.4e-50 202.2 132 72.7
Dinv22899 Davidia involucrata HOM05D003066 ORTHO05D004162 4.2e-50 201.4 101 90.1
Gorai.009G045100 Gossypium raimondii HOM05D003066 ORTHO05D004162 1.2e-49 199.9 107 85.0
Hma1.2p1_1957F.1_g309050 Hydrangea macrophylla HOM05D003066 ORTHO05D004162 1.2e-49 199.9 105 91.4
SMO201G0119 Selaginella moellendorffii HOM05D003066 ORTHO05D004162 3.5e-49 198.4 132 68.2
Mapoly0068s0042 Marchantia polymorpha HOM05D003066 ORTHO05D004162 4.6e-49 198.0 129 72.9
Lsat_1_v5_gn_7_44401 Lactuca sativa HOM05D003066 ORTHO05D004162 1.8e-48 196.1 111 82.0
Cre12.g534800 Chlamydomonas reinhardtii HOM05D003066 ORTHO05D004162 2.3e-48 195.7 113 77.0
Lsat_1_v5_gn_9_73621 Lactuca sativa HOM05D003066 ORTHO05D004162 2.3e-48 195.7 111 81.1
Lsat_1_v5_gn_5_26441 Lactuca sativa HOM05D003066 ORTHO05D004162 6.7e-48 194.1 111 81.1
Lsat_1_v5_gn_5_141420 Lactuca sativa HOM05D003066 ORTHO05D004162 1.3e-46 189.9 111 80.2
Lsat_1_v5_gn_7_104540 Lactuca sativa HOM05D003066 ORTHO05D004162 1.3e-46 189.9 120 73.3
PRCOL_00000289 Prasinoderma coloniale HOM05D003066 ORTHO05D004162 4.8e-46 188.0 132 67.4
MCO15G616 Micromonas commoda HOM05D003066 ORTHO05D004162 1.8e-45 186.0 126 66.7
CBR_g3314 Chara braunii HOM05D003066 ORTHO05D004162 3.1e-45 185.3 127 66.1
Lsat_1_v5_gn_7_87221 Lactuca sativa HOM05D003066 ORTHO05D004162 7.4e-39 164.1 111 71.2
Oeu009352.1 Olea europaea HOM05D003066 ORTHO05D004162 3.1e-37 158.7 116 67.2
Actinidia14716 Actinidia chinensis HOM05D003066 ORTHO05D004162 9.0e-37 157.1 119 68.1
Actinidia14715 Actinidia chinensis HOM05D003066 ORTHO05D004162 2.6e-36 155.6 78 92.3
Cfa026270 Carpinus fangiana HOM05D003066 ORTHO05D004162 7.2e-34 147.5 104 63.5
SGA_v2.0_scaffold169G38693 Striga asiatica HOM05D003066 ORTHO05D004162 4.5e-28 128.3 132 52.3
Haze_18191 Corylus avellana HOM05D003066 ORTHO05D004162 2.7e-25 119.0 61 90.2
Hma1.2p1_0450F.1_g155533 Hydrangea macrophylla HOM05D003066 ORTHO05D004162 5.7e-23 111.3 62 83.9
Hma1.2p1_0450F.1_g155550 Hydrangea macrophylla HOM05D003066 ORTHO05D004162 5.7e-23 111.3 62 83.9
Pp3c13_14900 Physcomitrium patens HOM05D003066 ORTHO05D004162 3.8e-19 98.6 97 53.6


User provided reference genes

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