Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G080200 Glycine max HOM05D002824 ORTHO05D008771 2.6e-74 282.0 139 100.0
Glyma.05G019600 Glycine max HOM05D002824 ORTHO05D008771 7.0e-64 247.3 137 91.2
VMungo1215G1991 Vigna mungo HOM05D002824 ORTHO05D008771 4.5e-55 218.0 140 82.9
Phvul.003G183400 Phaseolus vulgaris HOM05D002824 ORTHO05D008771 5.6e-53 211.1 140 81.4
TPR.G40092 Trifolium pratense HOM05D002824 ORTHO05D008771 4.6e-39 164.9 146 63.7
arahy.Tifrunner.gnm1.ann1.RFE8PP Arachis hypogaea HOM05D002824 ORTHO05D008771 1.7e-38 162.9 118 77.1
Psat4g172920 Pisum sativum HOM05D002824 ORTHO05D008771 2.3e-38 162.5 144 64.6
Medtr8g061130 Medicago truncatula HOM05D002824 ORTHO05D008771 1.8e-35 152.9 142 62.0
Lj3g0012155 Lotus japonicus HOM05D002824 ORTHO05D008771 1.2e-34 150.2 133 63.9
Lalb_Chr01g0006541 Lupinus albus HOM05D002824 ORTHO05D008771 3.4e-34 148.7 138 59.4
Manes.10G116800 Manihot esculenta HOM05D002824 ORTHO05D008771 7.1e-32 141.0 84 77.4
ClCG11G018100 Citrullus lanatus HOM05D002824 ORTHO05D008771 4.6e-31 138.3 98 69.4
Potri.006G241100 Populus trichocarpa HOM05D002824 ORTHO05D008771 4.6e-31 138.3 84 76.2
Potri.018G038900 Populus trichocarpa HOM05D002824 ORTHO05D008771 1.3e-30 136.7 120 60.0
Manes.07G025200 Manihot esculenta HOM05D002824 ORTHO05D008771 1.7e-30 136.3 77 80.5
Eucgr.G00343 Eucalyptus grandis HOM05D002824 ORTHO05D008771 8.6e-30 134.0 100 67.0
Sed0016999 Sechium edule HOM05D002824 ORTHO05D008771 1.1e-29 133.7 137 60.6
Sabra06G0188500 Salix brachista HOM05D002824 ORTHO05D008771 1.5e-29 133.3 91 68.1
PGR042G2139 Punica granatum HOM05D002824 ORTHO05D008771 2.5e-29 132.5 128 57.0
Ciclev10022760m.g Citrus clementina HOM05D002824 ORTHO05D008771 3.3e-29 132.1 136 52.2
MELO3C016702.2 Cucumis melo HOM05D002824 ORTHO05D008771 3.3e-29 132.1 100 74.0
Hma1.2p1_0818F.1_g223320 Hydrangea macrophylla HOM05D002824 ORTHO05D008771 3.3e-29 132.1 70 81.4
HanXRQChr00c0394g0574551 Helianthus annuus HOM05D002824 ORTHO05D008771 5.6e-29 131.3 70 80.0
HanXRQChr00c0593g0576361 Helianthus annuus HOM05D002824 ORTHO05D008771 5.6e-29 131.3 70 80.0
HanXRQChr00c0925g0577891 Helianthus annuus HOM05D002824 ORTHO05D008771 5.6e-29 131.3 70 80.0
HanXRQChr01g0020221 Helianthus annuus HOM05D002824 ORTHO05D008771 5.6e-29 131.3 70 80.0
HanXRQChr04g0127491 Helianthus annuus HOM05D002824 ORTHO05D008771 5.6e-29 131.3 70 80.0
HanXRQChr05g0152571 Helianthus annuus HOM05D002824 ORTHO05D008771 5.6e-29 131.3 70 80.0
HanXRQChr10g0284381 Helianthus annuus HOM05D002824 ORTHO05D008771 5.6e-29 131.3 70 80.0
HanXRQChr10g0318061 Helianthus annuus HOM05D002824 ORTHO05D008771 5.6e-29 131.3 70 80.0
HanXRQChr11g0321091 Helianthus annuus HOM05D002824 ORTHO05D008771 5.6e-29 131.3 70 80.0
HanXRQChr11g0326961 Helianthus annuus HOM05D002824 ORTHO05D008771 5.6e-29 131.3 70 80.0
HanXRQChr12g0369851 Helianthus annuus HOM05D002824 ORTHO05D008771 5.6e-29 131.3 70 80.0
HanXRQChr15g0486561 Helianthus annuus HOM05D002824 ORTHO05D008771 5.6e-29 131.3 70 80.0
HanXRQCPg0580181 Helianthus annuus HOM05D002824 ORTHO05D008771 5.6e-29 131.3 70 80.0
CiPaw.11G169000 Carya illinoinensis HOM05D002824 ORTHO05D008771 7.3e-29 131.0 122 61.5
QL08p021656 Quercus lobata HOM05D002824 ORTHO05D008771 9.5e-29 130.6 135 58.5
Aqoxy7G01548 Aquilegia oxysepala HOM05D002824 ORTHO05D008771 1.6e-28 129.8 80 73.8
DCAR_032520 Daucus carota HOM05D002824 ORTHO05D008771 1.6e-28 129.8 70 77.1
PSO548G0003 Papaver somniferum HOM05D002824 ORTHO05D008771 1.6e-28 129.8 70 78.6
Gohir.A12G232300 Gossypium hirsutum HOM05D002824 ORTHO05D008771 2.1e-28 129.4 77 76.6
Gohir.D12G235100 Gossypium hirsutum HOM05D002824 ORTHO05D008771 2.1e-28 129.4 77 76.6
Gorai.008G251300 Gossypium raimondii HOM05D002824 ORTHO05D008771 2.1e-28 129.4 77 76.6
CsaV3_4G033730 Cucumis sativus L. HOM05D002824 ORTHO05D008771 2.8e-28 129.0 103 65.0
Sc25g0002050 Simmondsia chinensis HOM05D000964 ORTHO05D001488 2.8e-28 129.0 70 80.0
Solyc12g098350.1 Solanum lycopersicum HOM05D002824 ORTHO05D008771 3.6e-28 128.6 71 80.3
Sopen12g033130 Solanum pennellii HOM05D002824 ORTHO05D008771 3.6e-28 128.6 71 80.3
PGSC0003DMG400007705 Solanum tuberosum HOM05D002824 ORTHO05D008771 3.6e-28 128.6 71 80.3
Nitab4.5_0000676g0190 Nicotiana tabacum HOM05D002824 ORTHO05D008771 8.1e-28 127.5 71 78.9
Nitab4.5_0005206g0060 Nicotiana tabacum HOM05D002824 ORTHO05D008771 8.1e-28 127.5 71 78.9
Peaxi162Scf00652g00418 Petunia axillaris HOM05D002824 ORTHO05D008771 8.1e-28 127.5 71 78.9
Atru.chr9.2077 Acer truncatum HOM05D002824 ORTHO05D008771 1.1e-27 127.1 96 65.6
Atru.chr1.2540 Acer truncatum HOM05D002824 ORTHO05D008771 1.4e-27 126.7 96 64.6
Thecc.03G290100 Theobroma cacao HOM05D002824 ORTHO05D008771 1.4e-27 126.7 77 75.3
Ah.10g027210 Amaranthus hybridus HOM05D000964 ORTHO05D001488 2.3e-27 125.9 70 78.6
Ah.10g027340 Amaranthus hybridus HOM05D000964 ORTHO05D001488 2.3e-27 125.9 70 78.6
Ah.10g027460 Amaranthus hybridus HOM05D000964 ORTHO05D001488 2.3e-27 125.9 70 78.6
EL10Ac5g11668 Beta vulgaris HOM05D002824 ORTHO05D008771 2.3e-27 125.9 70 78.6
Duzib205G1549 Durio zibethinus HOM05D002824 ORTHO05D008771 4.0e-27 125.2 77 74.0
COL.COLO4_21755 Corchorus olitorius HOM05D002824 ORTHO05D008771 8.9e-27 124.0 77 74.0
FAN11G2965 Fragaria x ananassa HOM05D002824 ORTHO05D008771 1.2e-26 123.6 140 52.9
FAN21G0827 Fragaria x ananassa HOM05D002824 ORTHO05D008771 1.2e-26 123.6 140 52.9
Ah.10g028980 Amaranthus hybridus HOM05D000964 ORTHO05D001488 2.0e-26 122.9 70 77.1
Duzib084G0020 Durio zibethinus HOM05D002824 ORTHO05D008771 3.4e-26 122.1 77 72.7
Lsat_1_v5_gn_2_136980 Lactuca sativa HOM05D002824 ORTHO05D008771 3.4e-26 122.1 77 70.1
CAN.G767.42 Capsicum annuum HOM05D002824 ORTHO05D008771 4.4e-26 121.7 133 52.6
Prupe.4G182300 Prunus persica HOM05D002824 ORTHO05D008771 5.8e-26 121.3 144 51.4
Sc16g0004450 Simmondsia chinensis HOM05D002824 ORTHO05D008771 5.8e-26 121.3 70 75.7
Cpa.g.sc321.5 Carica papaya HOM05D002824 ORTHO05D008771 3.7e-25 118.6 73 79.5
Oeu054718.1 Olea europaea HOM05D002824 ORTHO05D008771 6.4e-25 117.9 70 74.3
Aa31LG9G11000 Aethionema arabicum HOM05D002824 ORTHO05D008771 6.0e-23 111.3 78 70.5
HanXRQChr02g0052601 Helianthus annuus HOM05D002824 ORTHO05D008771 1.3e-22 110.2 57 82.5
BcaB05g23855 Brassica carinata HOM05D002824 ORTHO05D008771 1.7e-22 109.8 78 67.9
A09p28030 Brassica napus HOM05D002824 ORTHO05D008771 1.7e-22 109.8 78 67.9
BraA09t38371Z Brassica rapa HOM05D002824 ORTHO05D008771 1.7e-22 109.8 78 67.9
AL6G45360 Arabidopsis lyrata HOM05D002824 ORTHO05D008771 2.3e-22 109.4 78 66.7
BcaB01g01596 Brassica carinata HOM05D002824 ORTHO05D008771 2.3e-22 109.4 78 66.7
BcaC04g21113 Brassica carinata HOM05D002824 ORTHO05D008771 2.3e-22 109.4 78 66.7
C09p35540 Brassica napus HOM05D002824 ORTHO05D008771 2.3e-22 109.4 78 66.7
BolC9t56393H Brassica oleracea HOM05D002824 ORTHO05D008771 2.3e-22 109.4 78 66.7
Carub.0006s3001 Capsella rubella HOM05D002824 ORTHO05D008771 2.3e-22 109.4 78 66.7
CARHR255400 Cardamine hirsuta HOM05D002824 ORTHO05D008771 2.3e-22 109.4 78 66.7
Thhalv10029051m.g Eutrema salsugineum HOM05D002824 ORTHO05D008771 2.3e-22 109.4 78 66.7
Sp6g06240 Schrenkiella parvula HOM05D002824 ORTHO05D008771 2.3e-22 109.4 78 66.7
AT4G11175 Arabidopsis thaliana HOM05D002824 ORTHO05D008771 3.9e-22 108.6 78 67.9
THA.LOC104814832 Tarenaya hassleriana HOM05D002824 ORTHO05D008771 3.9e-22 108.6 79 68.4
MD11G1244000 Malus domestica HOM05D002824 ORTHO05D008771 5.1e-22 108.2 95 58.9
Medtr0002s0770 Medicago truncatula HOM05D002824 ORTHO05D008771 5.6e-21 104.8 66 72.7
Ca_24278_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 9.6e-21 104.0 54 90.7
Lsat_1_v5_gn_0_41600 Lactuca sativa HOM05D000964 ORTHO05D004047 1.2e-20 103.6 53 83.0
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 1.2e-20 103.6 53 83.0
Lsat_1_v5_gn_3_81720 Lactuca sativa HOM05D000964 ORTHO05D003870 1.2e-20 103.6 53 83.0
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 1.2e-20 103.6 53 83.0
Lsat_1_v5_gn_8_146180 Lactuca sativa HOM05D000964 ORTHO05D003870 1.2e-20 103.6 53 83.0
Prupe.4G182400 Prunus persica HOM05D002824 ORTHO05D008771 2.8e-20 102.4 140 46.4
RcHm_v2.0_Chr5g0034161 Rosa chinensis HOM05D002824 ORTHO05D008771 4.7e-20 101.7 118 53.4
Hund04057 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-20 100.9 67 67.2
Hund08802 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-20 100.9 67 67.2
Hund12527 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-20 100.9 67 67.2
Hund19320 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-20 100.9 67 67.2
Hund27962 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-20 100.9 67 67.2
Hund27985 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-20 100.9 67 67.2
Hund28109 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-20 100.9 67 67.2
Hund28268 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-20 100.9 67 67.2
Hund28459 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-20 100.9 67 67.2
Hund28519 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-20 100.9 67 67.2
Hund28529 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-20 100.9 67 67.2
Hund28632 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-20 100.9 67 67.2
Hund28678 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-20 100.9 67 67.2
Hund28746 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-20 100.9 67 67.2
Hund28759 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-20 100.9 67 67.2
Hund28778 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-20 100.9 67 67.2
Hund28846 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-20 100.9 67 67.2
Hund29022 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-20 100.9 67 67.2
Hund29036 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-20 100.9 67 67.2
Hund29217 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-20 100.9 67 67.2
Hund29505 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-20 100.9 67 67.2
Hund29525 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-20 100.9 67 67.2
Hund29537 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-20 100.9 67 67.2
Hund29554 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-20 100.9 67 67.2
Hund29593 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-20 100.9 67 67.2
Hund29605 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-20 100.9 67 67.2
Hund29612 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-20 100.9 67 67.2
Hund29682 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-20 100.9 67 67.2
Hund29957 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-20 100.9 67 67.2
Hund30031 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-20 100.9 67 67.2
Hund30069 Selenicereus undatus HOM05D002824 ORTHO05D008771 8.1e-20 100.9 67 67.2
Hund30272 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-20 100.9 67 67.2
Hund30490 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-20 100.9 67 67.2
Hund30495 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-20 100.9 67 67.2
Hund30544 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-20 100.9 67 67.2
Hund27578 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 67 65.7
Lsat_1_v5_gn_5_50421 Lactuca sativa HOM05D000964 ORTHO05D003870 4.0e-19 98.6 53 79.2
Sc20g0004270 Simmondsia chinensis HOM05D000964 ORTHO05D001488 8.9e-19 97.4 65 70.8
PSO782G5188 Papaver somniferum HOM05D002824 ORTHO05D008771 2.6e-18 95.9 73 65.8
FAN16G1250 Fragaria x ananassa HOM05D002824 ORTHO05D008771 3.4e-18 95.5 119 51.3
FAN25G0310 Fragaria x ananassa HOM05D002824 ORTHO05D008771 3.4e-18 95.5 119 51.3
SMO358G0035 Selaginella moellendorffii HOM05D002824 ORTHO05D008771 3.4e-18 95.5 66 65.2
FvH4_3g20270 Fragaria vesca HOM05D002824 ORTHO05D008771 4.4e-18 95.1 119 51.3
Hund26844 Selenicereus undatus HOM05D000964 ORTHO05D001488 1.9e-16 89.7 62 64.5
Hund29164 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.2e-16 89.0 61 65.6
Peaxi162Scf00299g00114 Petunia axillaris HOM05D002824 ORTHO05D007162 2.1e-15 86.3 71 60.6
Ca_29478_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 6.0e-15 84.7 63 58.7
Cc09_g05310 Coffea canephora HOM05D002824 ORTHO05D008771 6.0e-15 84.7 80 57.5
Sc20g0003000 Simmondsia chinensis HOM05D002824 ORTHO05D008771 1.0e-14 84.0 50 72.0
Hund31501 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-13 80.1 53 67.9
vmacro22400 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 1.1e-11 73.9 64 54.7
vmacro22425 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 1.1e-11 73.9 64 54.7
PRCOL_00002279 Prasinoderma coloniale HOM05D002824 ORTHO05D008771 1.8e-11 73.2 60 51.7
RcHm_v2.0_CPg0501881 Rosa chinensis HOM05D002824 ORTHO05D008771 1.5e-10 70.1 53 56.6
Cre04.g218700 Chlamydomonas reinhardtii HOM05D002824 ORTHO05D008771 5.8e-10 68.2 87 36.8
MELO3C027648.2 Cucumis melo HOM05D002824 ORTHO05D008771 5.8e-10 68.2 72 52.8
FAN10G1907 Fragaria x ananassa HOM05D002824 ORTHO05D005776 2.9e-09 65.9 62 50.0
MBI15_g40528_MAGBIO Magnolia biondii HOM05D002824 ORTHO05D008771 3.8e-09 65.5 36 77.8
Nn002s41361 Nelumbo nucifera HOM05D002824 ORTHO05D008771 1.4e-08 63.5 35 77.1
Nn021s41523 Nelumbo nucifera HOM05D002824 ORTHO05D008771 1.4e-08 63.5 35 77.1
Nn070s42371 Nelumbo nucifera HOM05D002824 ORTHO05D008771 1.4e-08 63.5 35 77.1
FAN22G0293 Fragaria x ananassa HOM05D002824 ORTHO05D008771 2.4e-08 62.8 62 48.4
ClCG00G003150 Citrullus lanatus HOM05D002824 ORTHO05D008771 7.1e-08 61.2 45 66.7
MELO3C032365.2 Cucumis melo HOM05D002824 ORTHO05D008771 6.0e-07 58.2 72 47.2
Nitab4.5_0006114g0040 Nicotiana tabacum HOM05D000388 ORTHO05D009867 6.0e-07 58.2 39 64.1
ClCG11G017170 Citrullus lanatus HOM05D002824 ORTHO05D008771 1.0e-06 57.4 39 69.2
MELO3C033566.2 Cucumis melo HOM05D002824 ORTHO05D008771 3.9e-06 55.5 72 44.4
Nitab4.5_0000173g0110 Nicotiana tabacum HOM05D002824 ORTHO05D007162 8.7e-06 54.3 35 65.7


User provided reference genes

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