Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 1.3e-160 569.7 291 100.0
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 1.4e-146 523.1 291 88.7
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 3.8e-144 515.0 292 89.4
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 5.1e-141 504.6 291 85.6
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 1.9e-140 502.7 291 85.2
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 2.5e-132 475.7 292 84.2
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 5.6e-132 474.6 292 80.1
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 7.4e-132 474.2 292 80.5
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 2.8e-131 472.2 291 79.0
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 3.7e-131 471.9 292 79.5
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 6.2e-131 471.1 291 78.7
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 8.1e-131 470.7 291 85.6
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 1.1e-130 470.3 291 78.4
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 9.0e-130 467.2 293 82.3
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 9.0e-130 467.2 293 81.2
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 2.6e-129 465.7 292 78.8
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 2.6e-129 465.7 292 78.8
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 7.6e-129 464.2 292 78.4
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 7.6e-129 464.2 292 78.1
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 9.9e-129 463.8 285 82.1
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 1.7e-128 463.0 292 78.1
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 1.7e-128 463.0 291 75.6
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 3.8e-128 461.8 290 79.3
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 3.8e-128 461.8 292 77.1
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 4.9e-128 461.5 294 77.9
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 6.4e-128 461.1 291 74.9
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 8.4e-128 460.7 293 78.5
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 8.4e-128 460.7 292 81.2
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 1.1e-127 460.3 291 79.7
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 2.5e-127 459.1 293 80.9
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 4.2e-127 458.4 292 77.1
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 5.5e-127 458.0 294 77.2
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 9.3e-127 457.2 292 77.7
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 2.7e-126 455.7 290 76.2
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 4.6e-126 454.9 294 77.9
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 7.9e-126 454.1 291 79.4
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 3.9e-125 451.8 292 78.1
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 5.1e-125 451.4 322 70.5
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 6.7e-125 451.1 292 76.7
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 6.7e-125 451.1 292 75.0
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 6.7e-125 451.1 290 75.2
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 2.5e-124 449.1 290 77.9
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 2.5e-124 449.1 290 74.8
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 3.3e-124 448.7 292 76.0
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 4.3e-124 448.4 292 77.7
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 7.4e-124 447.6 294 76.9
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 7.4e-124 447.6 292 75.7
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 9.6e-124 447.2 305 71.5
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 2.1e-123 446.0 292 74.7
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 2.8e-123 445.7 292 78.1
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 2.8e-123 445.7 290 76.2
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 3.7e-123 445.3 291 74.6
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 3.7e-123 445.3 293 79.5
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 4.8e-123 444.9 293 74.7
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 6.2e-123 444.5 292 77.7
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 8.2e-123 444.1 292 75.3
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 8.2e-123 444.1 280 77.9
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 8.2e-123 444.1 291 76.6
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 1.1e-122 443.7 290 75.2
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 1.8e-122 443.0 292 74.0
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 6.9e-122 441.0 272 78.3
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 9.0e-122 440.7 292 75.0
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 9.0e-122 440.7 290 75.5
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 1.2e-121 440.3 292 76.4
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 1.5e-121 439.9 293 76.1
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 3.4e-121 438.7 292 74.3
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 7.6e-121 437.6 292 75.3
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 1.0e-120 437.2 291 78.4
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 1.0e-120 437.2 291 78.4
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 1.7e-120 436.4 326 67.8
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 3.8e-120 435.3 291 74.9
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 3.8e-120 435.3 291 74.6
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 8.4e-120 434.1 290 75.5
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 8.4e-120 434.1 297 75.8
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 1.1e-119 433.7 293 75.8
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 2.5e-119 432.6 295 75.6
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 4.2e-119 431.8 292 72.9
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 4.2e-119 431.8 290 74.5
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 1.6e-118 429.9 291 72.9
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 4.6e-118 428.3 290 74.5
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 7.9e-118 427.6 290 75.9
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 1.8e-117 426.4 292 75.0
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 3.3e-116 422.2 321 67.6
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 7.4e-116 421.0 291 68.0
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 7.4e-116 421.0 292 71.6
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 9.7e-116 420.6 294 70.4
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 1.6e-115 419.9 292 72.3
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.6e-115 419.9 310 70.3
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.6e-115 419.9 308 70.1
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 2.2e-115 419.5 292 70.2
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 6.3e-115 417.9 321 65.1
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 8.2e-115 417.5 292 75.7
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 1.2e-113 413.7 293 70.0
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 5.9e-113 411.4 268 75.4
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 2.2e-112 409.5 291 74.2
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 2.9e-112 409.1 291 74.2
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 8.5e-112 407.5 291 69.4
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 8.5e-112 407.5 291 69.4
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 1.4e-111 406.8 291 69.4
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 1.4e-109 400.2 291 68.7
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 3.9e-109 398.7 291 69.8
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 1.5e-108 396.7 291 67.4
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 1.3e-107 393.7 290 70.7
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 4.8e-107 391.7 238 81.1
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 4.1e-106 388.7 292 69.2
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 4.1e-106 388.7 289 69.2
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 9.1e-106 387.5 290 68.6
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 2.0e-105 386.3 227 81.5
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 7.7e-105 384.4 291 70.1
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 1.0e-104 384.0 292 66.4
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 1.0e-104 384.0 292 65.8
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 2.5e-103 379.4 385 56.1
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 1.6e-102 376.7 302 64.2
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 8.2e-99 364.4 228 77.2
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 1.8e-98 363.2 297 64.6
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 4.1e-98 362.1 293 64.2
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 8.5e-96 354.4 259 73.4
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.6e-94 350.1 290 63.1
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.1e-90 337.4 297 60.6
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 3.1e-90 335.9 227 69.2
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 4.1e-90 335.5 227 71.8
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 1.0e-88 330.9 191 81.7
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 6.5e-88 328.2 292 60.3
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 2.7e-86 322.8 292 58.2
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 4.4e-84 315.5 208 75.5
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 8.3e-83 311.2 284 57.7
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 5.9e-81 305.1 288 55.6
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 6.3e-75 285.0 296 49.7
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 7.0e-74 281.6 217 61.8
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 7.2e-71 271.6 184 69.6
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 4.7e-70 268.9 296 49.3
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 8.0e-70 268.1 202 65.8
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 9.8e-68 261.2 293 50.5
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.9e-63 246.9 289 49.1
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 1.9e-55 220.3 294 47.3
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 1.9e-55 220.3 294 47.3
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 1.9e-55 220.3 294 47.3
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 6.4e-51 205.3 262 46.9
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 2.3e-45 186.8 105 85.7
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 3.4e-44 183.0 108 82.4
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 7.1e-42 175.3 153 62.1
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 2.1e-41 173.7 153 61.4
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 2.1e-41 173.7 153 61.4
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 1.0e-40 171.4 150 58.0
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 4.3e-39 166.0 227 43.6
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 8.4e-35 151.8 188 43.6
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 3.0e-32 143.3 85 82.4
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 9.0e-29 131.7 73 89.0
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 9.0e-29 131.7 73 89.0
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 3.4e-28 129.8 72 88.9
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 1.7e-27 127.5 106 56.6
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 1.4e-26 124.4 79 79.7
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 2.4e-26 123.6 60 95.0
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 3.9e-24 116.3 109 57.8
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 3.1e-21 106.7 128 46.9
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 1.2e-20 104.8 120 48.3
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 1.4e-18 97.8 187 38.0
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 4.6e-17 92.8 59 74.6
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 1.8e-13 80.9 86 52.3
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 2.4e-13 80.5 231 29.0
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 1.4e-10 71.2 58 62.1
Glyma.10G062551 Glycine max HOM05D004410 ORTHO05D211239 3.7e-06 56.6 35 82.9


User provided reference genes

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