Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 2080.4 1039 100.0
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1980.7 1033 95.7
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1884.4 1034 91.3
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 0.0e+00 1882.1 1034 90.9
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 0.0e+00 1804.6 1041 86.3
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 0.0e+00 1786.5 1034 86.1
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 0.0e+00 1771.1 1035 85.3
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 0.0e+00 1762.3 1034 84.7
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1721.1 1041 82.4
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1720.3 1041 82.1
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 0.0e+00 1708.0 1036 83.4
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 0.0e+00 1608.6 1041 77.4
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 0.0e+00 1608.2 1039 77.0
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1598.2 1039 76.3
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1591.6 1039 75.6
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 0.0e+00 1591.2 1042 76.6
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 0.0e+00 1588.5 1041 76.5
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 0.0e+00 1582.8 1039 76.6
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 0.0e+00 1577.4 1039 75.5
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 0.0e+00 1572.0 1040 75.7
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 0.0e+00 1572.0 1041 76.1
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 0.0e+00 1569.7 1040 74.7
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 0.0e+00 1567.4 1039 75.6
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 0.0e+00 1555.8 1037 74.1
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 0.0e+00 1553.5 1039 74.9
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1552.0 1043 73.7
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1551.6 1038 74.1
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 0.0e+00 1551.2 1041 74.0
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 0.0e+00 1550.0 1039 75.3
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1546.6 1040 75.2
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 0.0e+00 1545.8 1039 75.0
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1531.9 1039 74.5
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 0.0e+00 1528.8 1037 73.2
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 0.0e+00 1523.5 1104 69.6
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 0.0e+00 1520.8 1040 72.9
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 0.0e+00 1516.5 1037 73.4
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 0.0e+00 1511.1 1037 73.0
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 0.0e+00 1508.4 1129 68.2
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 0.0e+00 1508.0 1040 72.2
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 0.0e+00 1503.8 1042 72.2
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 0.0e+00 1503.8 1042 72.1
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1502.3 1056 72.2
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1502.3 1042 72.4
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1501.9 1126 69.5
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 0.0e+00 1500.7 1044 71.6
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1500.0 1056 72.1
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 0.0e+00 1492.6 1039 71.1
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 0.0e+00 1492.2 1039 71.7
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 0.0e+00 1485.3 1039 71.6
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 0.0e+00 1484.5 1044 71.7
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1476.1 1040 70.9
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 0.0e+00 1475.7 1046 71.1
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 0.0e+00 1474.5 1040 70.7
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 0.0e+00 1474.1 960 76.9
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1473.0 1039 69.4
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 0.0e+00 1472.2 1040 70.7
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 0.0e+00 1469.1 1039 70.9
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 0.0e+00 1469.1 1040 71.4
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1466.4 1039 69.5
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1456.4 1041 70.0
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 0.0e+00 1452.6 1039 70.2
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 0.0e+00 1451.8 1039 70.1
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1451.4 1039 71.0
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 0.0e+00 1449.9 1039 70.7
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 0.0e+00 1447.6 1040 69.9
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 0.0e+00 1447.6 1039 70.6
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 0.0e+00 1446.8 1114 66.8
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1443.7 1041 68.9
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 0.0e+00 1443.7 1040 70.3
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1442.2 1036 71.0
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 0.0e+00 1440.2 847 84.1
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 0.0e+00 1438.7 1037 69.6
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 0.0e+00 1432.9 1039 69.8
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 0.0e+00 1431.8 1039 67.9
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 0.0e+00 1428.3 1037 68.9
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 0.0e+00 1427.5 1081 67.6
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1427.5 960 73.8
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 0.0e+00 1416.7 1043 68.6
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 0.0e+00 1414.8 1044 68.6
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 0.0e+00 1413.3 1248 59.5
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 0.0e+00 1398.6 1046 68.0
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 0.0e+00 1395.2 1049 67.5
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 0.0e+00 1395.2 1037 68.6
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1385.9 1038 66.9
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1385.2 1047 68.4
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 0.0e+00 1380.5 1044 66.2
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 0.0e+00 1372.1 932 73.2
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1298.9 854 76.0
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 0.0e+00 1283.1 843 75.8
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 0.0e+00 1282.3 1037 62.9
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 0.0e+00 1248.8 800 78.4
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 0.0e+00 1139.4 790 70.9
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 0.0e+00 1090.5 1068 54.9
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 1.4e-311 1073.2 958 59.7
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 2.4e-310 1068.9 773 69.6
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 1.1e-307 1060.1 1042 53.2
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 1.3e-292 1010.0 1051 51.8
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 7.6e-272 941.0 763 63.8
CAN.G86.12 Capsicum annuum HOM05D004198 ORTHO05D006470 2.9e-263 912.5 633 72.7
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 1.9e-254 883.2 934 53.9
CDE05G0881 Ceratophyllum demersum HOM05D004198 ORTHO05D006470 3.2e-238 829.3 658 62.8
CARHR241180 Cardamine hirsuta HOM05D004198 ORTHO05D006470 1.8e-236 823.5 517 77.4
PGSC0003DMG401015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 1.4e-233 813.9 518 78.2
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 4.1e-209 732.6 681 57.1
C07p59520 Brassica napus HOM05D004198 ORTHO05D006470 3.5e-208 729.6 450 78.4
BolC7t46396H Brassica oleracea HOM05D004198 ORTHO05D006470 1.7e-207 727.2 450 78.0
AL7G18410 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 1.5e-206 724.2 481 74.0
BraA03t15222Z Brassica rapa HOM05D004198 ORTHO05D006470 4.2e-206 722.6 453 77.7
EL10Ac8g18951 Beta vulgaris HOM05D004198 ORTHO05D006470 1.5e-203 714.1 468 73.7
A03p61830 Brassica napus HOM05D004198 ORTHO05D006470 3.4e-203 713.0 447 75.6
Carub.0007s0731 Capsella rubella HOM05D004198 ORTHO05D006470 3.4e-203 713.0 496 71.6
BolC7t46395H Brassica oleracea HOM05D004198 ORTHO05D006470 1.2e-200 704.5 454 74.4
Duzib168G0961 Durio zibethinus HOM05D004198 ORTHO05D006470 5.2e-196 689.1 450 74.9
TWI63G0157 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 1.6e-189 667.5 452 71.5
BraA03t15221Z Brassica rapa HOM05D004198 ORTHO05D006470 5.8e-187 659.1 474 69.0
Atru.chr7.1795 Acer truncatum HOM05D004198 ORTHO05D006470 2.0e-184 650.6 448 71.4
PSO135G0878 Papaver somniferum HOM05D004198 ORTHO05D000955 1.9e-169 600.9 448 67.4
C07p59510 Brassica napus HOM05D004198 ORTHO05D006470 1.2e-168 598.2 458 65.7
DCAR_011904 Daucus carota HOM05D004198 ORTHO05D006470 4.7e-165 586.3 416 70.9
BcaNung02155 Brassica carinata HOM05D004198 ORTHO05D006470 1.4e-161 574.7 450 64.2
PGSC0003DMG402015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 8.4e-154 548.9 437 64.5
Lj4C923T7 Lonicera japonica HOM05D004198 ORTHO05D006470 1.6e-152 544.7 384 71.1
Ciclev10008705m.g Citrus clementina HOM05D004198 ORTHO05D006470 1.3e-151 541.6 366 70.8
Thecc.09G068400 Theobroma cacao HOM05D004198 ORTHO05D006470 1.8e-151 541.2 366 71.6
vmacro12815 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 1.2e-144 518.5 597 49.6
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 4.6e-144 516.5 1106 32.4
A03p61840 Brassica napus HOM05D004198 ORTHO05D006470 3.3e-118 430.6 267 79.8
Lj4A923G18 Lonicera japonica HOM05D004198 ORTHO05D006470 1.4e-113 415.2 260 80.4
DCAR_000446 Daucus carota HOM05D004198 ORTHO05D006470 2.3e-111 407.9 286 73.8
PGSC0003DMG400002301 Solanum tuberosum HOM05D004198 ORTHO05D006470 2.2e-109 401.4 271 75.6
CAN.G86.10 Capsicum annuum HOM05D004198 ORTHO05D006470 3.2e-105 387.5 316 63.0
Sopen07g006480 Solanum pennellii HOM05D004198 ORTHO05D006470 3.3e-102 377.5 235 82.1
FAN26G1461 Fragaria x ananassa HOM05D004198 ORTHO05D006470 7.5e-102 376.3 213 87.3
SEGI_06318 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 3.7e-101 374.0 238 78.6
Potri.006G134450 Populus trichocarpa HOM05D004198 ORTHO05D006470 2.5e-97 361.3 266 72.2
PSO724G0241 Papaver somniferum HOM05D004198 ORTHO05D006470 4.0e-71 274.2 156 83.3
Zm00001eb257190 Zea mays HOM05D004198 ORTHO05D030652 6.6e-66 256.9 285 48.4
Cc00_g13780 Coffea canephora HOM05D004198 ORTHO05D015220 5.6e-57 227.3 194 59.8
PGSC0003DMG400002302 Solanum tuberosum HOM05D004198 ORTHO05D015220 4.9e-53 214.2 190 58.9
Lj4A923T26 Lonicera japonica HOM05D004198 ORTHO05D006470 2.1e-48 198.7 182 61.0
SEGI_37264 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 5.4e-44 184.1 156 59.0
ATR0721G130 Amborella trichopoda HOM05D004198 ORTHO05D006470 4.6e-43 181.0 120 70.8
RcHm_v2.0_Chr2g0169881 Rosa chinensis HOM05D004198 ORTHO05D006470 4.8e-40 171.0 157 59.2
RcHm_v2.0_Chr2g0121231 Rosa chinensis HOM05D004198 ORTHO05D006470 5.4e-36 157.5 179 51.4
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 1.6e-32 146.0 85 75.3
Zm00001eb048050 Zea mays HOM05D004198 ORTHO05D030652 9.0e-31 140.2 137 54.0
Zm00001eb129620 Zea mays HOM05D004198 ORTHO05D030652 5.8e-30 137.5 137 53.3
SEGI_05824 Sequoiadendron giganteum HOM05D004198 ORTHO05D043385 3.8e-29 134.8 83 73.5
Prupe.6G271300 Prunus persica HOM05D004198 ORTHO05D015220 5.1e-26 124.4 94 66.0
CDE05G0275 Ceratophyllum demersum HOM05D004198 ORTHO05D015220 7.4e-25 120.6 87 71.3
RcHm_v2.0_Chr2g0121241 Rosa chinensis HOM05D004198 ORTHO05D347069 8.2e-24 117.1 96 62.5
RcHm_v2.0_Chr2g0169891 Rosa chinensis HOM05D004198 ORTHO05D340468 2.2e-21 109.0 96 59.4
MD02G1105200 Malus domestica HOM05D004198 ORTHO05D006470 4.9e-21 107.8 55 89.1
Prupe.6G271400 Prunus persica HOM05D004198 ORTHO05D015220 4.2e-20 104.8 81 65.4
Solyc07g017675.1 Solanum lycopersicum HOM05D004198 ORTHO05D015220 5.5e-20 104.4 96 55.2
Sopen07g006500 Solanum pennellii HOM05D004198 ORTHO05D015220 2.3e-18 99.0 91 56.0
CAN.G86.11 Capsicum annuum HOM05D004198 ORTHO05D114955 6.7e-18 97.4 62 79.0
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 1.1e-15 90.1 57 71.9
CANSAT25G3628 Cannabis sativa HOM05D004198 ORTHO05D043385 5.3e-15 87.8 58 65.5
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 9.0e-15 87.0 74 62.2
RcHm_v2.0_Chr5g0070481 Rosa chinensis HOM05D004198 ORTHO05D347121 9.0e-15 87.0 74 59.5
Zm00001eb129630 Zea mays HOM05D004198 ORTHO05D015220 2.6e-14 85.5 53 79.2
EL10Ac4g10158 Beta vulgaris HOM05D001013 ORTHO05D016001 3.4e-14 85.1 56 67.9
TPR.G28245 Trifolium pratense HOM05D001159 ORTHO05D001712 2.1e-11 75.9 41 82.9
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 3.6e-11 75.1 74 55.4
Zm00001eb048040 Zea mays HOM05D004198 ORTHO05D015220 1.5e-09 69.7 44 77.3
Solyc07g017670.3 Solanum lycopersicum HOM05D004198 ORTHO05D030652 2.2e-08 65.9 36 80.6
EL10Ac8g19732 Beta vulgaris HOM05D004198 ORTHO05D006470 1.1e-07 63.5 48 66.7


User provided reference genes

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