Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G193166 Glycine max HOM05D007457 ORTHO05D009435 1.7e-58 229.2 118 100.0
Glyma.16G192500 Glycine max HOM05D007457 ORTHO05D009435 6.8e-52 207.2 108 99.1
Glyma.16G194000 Glycine max HOM05D007457 ORTHO05D009435 2.0e-51 205.7 107 99.1
Phvul.004G117300 Phaseolus vulgaris HOM05D007457 ORTHO05D009435 5.0e-47 191.0 108 92.6
Phvul.004G117400 Phaseolus vulgaris HOM05D007457 ORTHO05D009435 1.1e-46 189.9 108 91.7
Medtr6g055360 Medicago truncatula HOM05D007457 ORTHO05D009435 1.1e-41 173.3 107 82.2
Lj2g0021879 Lotus japonicus HOM05D007457 ORTHO05D009435 1.9e-41 172.6 107 81.3
arahy.Tifrunner.gnm1.ann1.CU1ASG Arachis hypogaea HOM05D007457 ORTHO05D009435 9.2e-41 170.2 103 85.4
arahy.Tifrunner.gnm1.ann1.990F6U Arachis hypogaea HOM05D007457 ORTHO05D009435 1.2e-40 169.9 103 85.4
Ca_27692_v3 Cicer arietinum L. HOM05D007457 ORTHO05D009435 1.7e-39 166.0 107 81.3
TPR.G10758 Trifolium pratense HOM05D007457 ORTHO05D009435 1.1e-38 163.3 108 79.6
Psat0s4093g0040 Pisum sativum HOM05D007457 ORTHO05D009435 2.5e-38 162.2 107 76.6
Lalb_Chr01g0009291 Lupinus albus HOM05D007457 ORTHO05D009435 8.9e-36 153.7 109 76.1
QL09p014483 Quercus lobata HOM05D007457 ORTHO05D009435 1.4e-33 146.4 107 69.2
QL09p029389 Quercus lobata HOM05D007457 ORTHO05D009435 2.1e-32 142.5 107 68.2
Rhsim03G0179800 Rhododendron simsii HOM05D007457 ORTHO05D009435 3.0e-31 138.7 107 68.2
vmacro06689 Vaccinium macrocarpon HOM05D007457 ORTHO05D009435 1.9e-30 136.0 105 66.7
AUR62015996 Chenopodium quinoa HOM05D007457 ORTHO05D009435 4.3e-30 134.8 99 66.7
CiPaw.04G070400 Carya illinoinensis HOM05D007457 ORTHO05D009435 5.6e-30 134.4 100 64.0
AUR62021203 Chenopodium quinoa HOM05D007457 ORTHO05D009435 8.1e-29 130.6 106 60.4
Eucgr.L01882 Eucalyptus grandis HOM05D007457 ORTHO05D009435 1.1e-28 130.2 101 67.3
PGR142G3430 Punica granatum HOM05D007457 ORTHO05D009435 1.4e-28 129.8 96 68.8
Eucgr.K00246 Eucalyptus grandis HOM05D007457 ORTHO05D009435 1.8e-28 129.4 101 67.3
Sc13g0008580 Simmondsia chinensis HOM05D007457 ORTHO05D009435 3.1e-28 128.6 104 60.6
Dinv28451 Davidia involucrata HOM05D007457 ORTHO05D009435 1.2e-27 126.7 99 65.7
EL10Ac3g05665 Beta vulgaris HOM05D007457 ORTHO05D009435 1.5e-27 126.3 97 64.9
Manes.14G026700 Manihot esculenta HOM05D007457 ORTHO05D009435 4.4e-27 124.8 107 63.6
CSS0002258 Camellia sinensis var. sinensis HOM05D007457 ORTHO05D009435 9.9e-27 123.6 101 63.4
Duzib084G1133 Durio zibethinus HOM05D007457 ORTHO05D009435 1.3e-26 123.2 96 67.7
Sabra15G0152800 Salix brachista HOM05D007457 ORTHO05D006729 1.7e-26 122.9 94 64.9
Cfa008310 Carpinus fangiana HOM05D007457 ORTHO05D009435 3.8e-26 121.7 103 61.2
Potri.015G142800 Populus trichocarpa HOM05D007457 ORTHO05D009435 8.4e-26 120.6 94 66.0
Ah.07g207290 Amaranthus hybridus HOM05D007457 ORTHO05D009435 1.4e-25 119.8 99 61.6
COL.COLO4_14297 Corchorus olitorius HOM05D007457 ORTHO05D009435 1.4e-25 119.8 96 63.5
Solyc03g025900.3 Solanum lycopersicum HOM05D007457 ORTHO05D009435 1.4e-25 119.8 107 55.1
Sopen03g004710 Solanum pennellii HOM05D007457 ORTHO05D009435 1.4e-25 119.8 107 55.1
THA.LOC104798924 Tarenaya hassleriana HOM05D007457 ORTHO05D009435 1.4e-25 119.8 99 63.6
ClCG05G007970 Citrullus lanatus HOM05D007457 ORTHO05D009435 1.9e-25 119.4 105 56.2
Hund04734 Selenicereus undatus HOM05D007457 ORTHO05D009435 1.9e-25 119.4 100 59.0
Cc02_g03100 Coffea canephora HOM05D007457 ORTHO05D009435 2.4e-25 119.0 105 58.1
Peaxi162Scf00915g00040 Petunia axillaris HOM05D007457 ORTHO05D009435 3.2e-25 118.6 105 54.3
DCAR_009359 Daucus carota HOM05D007457 ORTHO05D009435 4.2e-25 118.2 94 62.8
PGSC0003DMG400014289 Solanum tuberosum HOM05D007457 ORTHO05D009435 4.2e-25 118.2 107 56.1
Hma1.2p1_2482F.1_g323000 Hydrangea macrophylla HOM05D007457 ORTHO05D009435 5.4e-25 117.9 107 59.8
Thecc.03G175400 Theobroma cacao HOM05D007457 ORTHO05D009435 5.4e-25 117.9 96 63.5
QL09p014434 Quercus lobata HOM05D007457 ORTHO05D009435 7.1e-25 117.5 161 45.3
Haze_13725 Corylus avellana HOM05D007457 ORTHO05D009435 9.3e-25 117.1 96 64.6
Ciclev10004614m.g Citrus clementina HOM05D007457 ORTHO05D009435 1.2e-24 116.7 107 57.0
HanXRQChr15g0482951 Helianthus annuus HOM05D007457 ORTHO05D009435 1.2e-24 116.7 94 63.8
Lj1A996G52 Lonicera japonica HOM05D007457 ORTHO05D009435 7.8e-24 114.0 108 56.5
CAN.G913.2 Capsicum annuum HOM05D007457 ORTHO05D009435 1.3e-23 113.2 94 56.4
ECA234G0644 Erigeron canadensis HOM05D007457 ORTHO05D009435 1.3e-23 113.2 94 58.5
Cpa.g.sc107.42 Carica papaya HOM05D007457 ORTHO05D009435 1.7e-23 112.8 109 58.7
Sed0003153 Sechium edule HOM05D007457 ORTHO05D009435 1.7e-23 112.8 107 53.3
Gorai.006G048300 Gossypium raimondii HOM05D007457 ORTHO05D009435 3.0e-23 112.1 105 54.3
SGA_v2.0_scaffold44G16713 Striga asiatica HOM05D007457 ORTHO05D009435 3.9e-23 111.7 103 57.3
GSVIVG01010540001 Vitis vinifera HOM05D007457 ORTHO05D009435 3.9e-23 111.7 107 56.1
Atru.chr1.473 Acer truncatum HOM05D007457 ORTHO05D009435 5.1e-23 111.3 107 55.1
MSTRG.27120 Avicennia marina HOM05D007457 ORTHO05D009435 8.7e-23 110.5 106 53.8
Actinidia34104 Actinidia chinensis HOM05D007457 ORTHO05D009435 1.1e-22 110.2 105 58.1
Gohir.D09G042000 Gossypium hirsutum HOM05D007457 ORTHO05D009435 1.1e-22 110.2 105 54.3
Nitab4.5_0000716g0160 Nicotiana tabacum HOM05D007457 ORTHO05D009435 1.1e-22 110.2 100 53.0
Nitab4.5_0003365g0030 Nicotiana tabacum HOM05D007457 ORTHO05D009435 1.1e-22 110.2 95 54.7
TAR629G0903 Trochodendron aralioides HOM05D007457 ORTHO05D009435 1.5e-22 109.8 101 58.4
Gohir.A09G041365 Gossypium hirsutum HOM05D007457 ORTHO05D009435 1.9e-22 109.4 105 54.3
TWI23G1174 Tripterygium wilfordii HOM05D007457 ORTHO05D009435 1.9e-22 109.4 94 61.7
PSO478G1701 Papaver somniferum HOM05D007457 ORTHO05D009435 3.3e-22 108.6 96 59.4
PSO782G2212 Papaver somniferum HOM05D007457 ORTHO05D009435 3.3e-22 108.6 96 59.4
Lsat_1_v5_gn_3_64061 Lactuca sativa HOM05D007457 ORTHO05D009435 5.6e-22 107.8 94 59.6
MELO3C006899.2 Cucumis melo HOM05D007457 ORTHO05D009435 9.6e-22 107.1 105 55.2
Nn6g33538 Nelumbo nucifera HOM05D007457 ORTHO05D009435 1.6e-21 106.3 93 60.2
Aqoxy7G00371 Aquilegia oxysepala HOM05D007457 ORTHO05D009435 2.1e-21 105.9 100 57.0
Migut.F00351 Erythranthe guttata HOM05D007457 ORTHO05D009435 2.4e-20 102.4 100 54.0
MBI17_g34336_MAGBIO Magnolia biondii HOM05D007457 ORTHO05D009435 2.4e-20 102.4 79 64.6
Actinidia32867 Actinidia chinensis HOM05D007457 ORTHO05D009435 2.0e-19 99.4 105 54.3
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 2.6e-19 99.0 97 53.6
AL5G28420 Arabidopsis lyrata HOM05D007457 ORTHO05D009435 3.4e-19 98.6 96 56.2
CsaV3_3G017010 Cucumis sativus L. HOM05D007457 ORTHO05D009435 7.6e-19 97.4 105 50.5
A01p25110 Brassica napus HOM05D007457 ORTHO05D009435 1.3e-18 96.7 62 69.4
BraA01t02422Z Brassica rapa HOM05D007457 ORTHO05D009435 1.3e-18 96.7 62 69.4
Thhalv10010222m.g Eutrema salsugineum HOM05D007457 ORTHO05D009435 1.7e-18 96.3 108 50.9
Carub.0005s1507 Capsella rubella HOM05D007457 ORTHO05D009435 2.2e-18 95.9 96 54.2
AT3G48900 Arabidopsis thaliana HOM05D007457 ORTHO05D009435 2.9e-18 95.5 96 54.2
BcaC09g49913 Brassica carinata HOM05D007457 ORTHO05D009435 4.9e-18 94.7 62 67.7
C01p31350 Brassica napus HOM05D007457 ORTHO05D009435 4.9e-18 94.7 62 67.7
BolC1t03073H Brassica oleracea HOM05D007457 ORTHO05D009435 4.9e-18 94.7 62 67.7
Sp5g13150 Schrenkiella parvula HOM05D007457 ORTHO05D009435 1.4e-17 93.2 62 69.4
BcaB05g22976 Brassica carinata HOM05D007457 ORTHO05D009435 1.9e-17 92.8 62 67.7
Zm00001eb259890 Zea mays HOM05D007457 ORTHO05D009435 5.4e-17 91.3 94 52.1
Aa31LG4G17420 Aethionema arabicum HOM05D007457 ORTHO05D009435 4.6e-16 88.2 97 51.5
CARHR157710 Cardamine hirsuta HOM05D007457 ORTHO05D009435 6.0e-16 87.8 64 67.2
unitig_747.g21768 Utricularia gibba HOM05D007457 ORTHO05D009435 5.1e-15 84.7 94 48.9
SalBow4G0576 Salvia bowleyana HOM05D007457 ORTHO05D009435 9.6e-14 80.5 114 43.9
ATR0680G303 Amborella trichopoda HOM05D007457 ORTHO05D009435 7.4e-06 54.3 37 54.1


User provided reference genes

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