Gene: AT3G48900

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G48900
  • Transcript Identifier AT3G48900.1
  • Gene Type Coding gene
  • Location Chr3 : 18132449-18136239 : positive

Gene Family Information

  • ID HOM05D007457
  • #Genes/#Species 103/83
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G48900.1
  • Alias AtSEND1,SEND1
  • uniprot Q9M2Z3

Descriptions

  • Description single-stranded DNA endonuclease family protein
  • Computational description single-stranded DNA endonuclease family protein; FUNCTIONS IN: chromatin binding, DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair, chromatin assembly or disassembly; LOCATED IN: chromatin, endomembrane system, nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), Chromo domain-like (InterPro:IPR016197), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), Chromo domain (InterPro:IPR000953), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: 5'-3' exonuclease family protein (TAIR:AT3G28030.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0090305
IDA
Gene Ontologynucleic acid phosphodiester bond hydrolysis1
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006281
IMP
Gene OntologyDNA repair2
GO:0009650
IGI
Gene OntologyUV protection2
GO:0000723
IMP
Gene Ontologytelomere maintenance2
GO:0006259
IDA
Gene OntologyDNA metabolic process1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004518
IEA
GOA Databasenuclease activity
GO:0004518
IEA
InterPronuclease activity
GO:0004519
IEA
GOA Databaseendonuclease activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0017108
IDA
IBA
Gene Ontology5'-flap endonuclease activity1 3
GO:0008821
IDA
Gene Ontologycrossover junction endodeoxyribonuclease activity1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR016197 Chromo-like domain superfamily
IPR029060 PIN-like domain superfamily
IPR006086 XPG-I domain
IPR006084 XPG/Rad2 endonuclease
IPR036279 5'-3' exonuclease, C-terminal domain superfamily
Mapman id Description
13.3.5.5.2.4 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class II interference-insensitive crossover pathway.Holliday junction resolvase (SEND1)