Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G183800 Glycine max HOM05D007457 ORTHO05D009435 8.6e-78 293.5 141 100.0
Glyma.16G190101 Glycine max HOM05D007457 ORTHO05D009435 4.4e-66 254.6 122 100.0
Glyma.16G192666 Glycine max HOM05D007457 ORTHO05D009435 5.3e-43 177.9 122 73.0
Glyma.16G194000 Glycine max HOM05D007457 ORTHO05D009435 4.3e-37 158.3 76 94.7
Lj2g0021879 Lotus japonicus HOM05D007457 ORTHO05D009435 5.5e-32 141.4 101 65.3
TPR.G10758 Trifolium pratense HOM05D007457 ORTHO05D009435 1.3e-30 136.7 76 78.9
Phvul.004G117400 Phaseolus vulgaris HOM05D007457 ORTHO05D009435 1.8e-30 136.3 99 66.7
arahy.Tifrunner.gnm1.ann1.990F6U Arachis hypogaea HOM05D007457 ORTHO05D009435 3.9e-30 135.2 76 78.9
arahy.Tifrunner.gnm1.ann1.CU1ASG Arachis hypogaea HOM05D007457 ORTHO05D009435 3.9e-30 135.2 76 78.9
VMungo0464G0383 Vigna mungo HOM05D007457 ORTHO05D009435 8.7e-30 134.0 87 72.4
Lalb_Chr01g0009291 Lupinus albus HOM05D007457 ORTHO05D009435 1.5e-29 133.3 99 63.6
Ca_27692_v3 Cicer arietinum L. HOM05D007457 ORTHO05D009435 2.5e-29 132.5 76 77.6
CiPaw.04G070400 Carya illinoinensis HOM05D007457 ORTHO05D009435 1.3e-28 130.2 76 76.3
QL09p014483 Quercus lobata HOM05D007457 ORTHO05D009435 3.7e-28 128.6 99 61.6
Medtr6g055360 Medicago truncatula HOM05D007457 ORTHO05D009435 6.3e-28 127.9 99 61.6
Cfa008310 Carpinus fangiana HOM05D007457 ORTHO05D009435 5.3e-27 124.8 76 72.4
Psat0s4093g0040 Pisum sativum HOM05D007457 ORTHO05D009435 5.3e-27 124.8 76 73.7
AT3G48900 Arabidopsis thaliana HOM05D007457 ORTHO05D009435 3.4e-26 122.1 101 60.4
Hma1.2p1_2482F.1_g323000 Hydrangea macrophylla HOM05D007457 ORTHO05D009435 5.9e-26 121.3 99 60.6
Migut.F00351 Erythranthe guttata HOM05D007457 ORTHO05D009435 1.3e-25 120.2 76 68.4
TAR629G0903 Trochodendron aralioides HOM05D007457 ORTHO05D009435 1.3e-25 120.2 104 58.7
TWI23G1174 Tripterygium wilfordii HOM05D007457 ORTHO05D009435 1.7e-25 119.8 74 73.0
A01p25110 Brassica napus HOM05D007457 ORTHO05D009435 2.2e-25 119.4 104 58.7
BraA01t02422Z Brassica rapa HOM05D007457 ORTHO05D009435 2.2e-25 119.4 104 58.7
CSS0002258 Camellia sinensis var. sinensis HOM05D007457 ORTHO05D009435 3.8e-25 118.6 74 70.3
GSVIVG01010540001 Vitis vinifera HOM05D007457 ORTHO05D009435 5.0e-25 118.2 99 56.6
Actinidia34104 Actinidia chinensis HOM05D007457 ORTHO05D009435 6.5e-25 117.9 76 69.7
Lj1A996G52 Lonicera japonica HOM05D007457 ORTHO05D009435 8.5e-25 117.5 99 56.6
Aqoxy7G00371 Aquilegia oxysepala HOM05D007457 ORTHO05D009435 1.4e-24 116.7 142 46.5
SGA_v2.0_scaffold44G16713 Striga asiatica HOM05D007457 ORTHO05D009435 1.4e-24 116.7 76 65.8
Actinidia32867 Actinidia chinensis HOM05D007457 ORTHO05D009435 1.9e-24 116.3 76 67.1
Duzib084G1133 Durio zibethinus HOM05D007457 ORTHO05D009435 2.5e-24 115.9 76 67.1
vmacro06689 Vaccinium macrocarpon HOM05D007457 ORTHO05D009435 2.5e-24 115.9 99 55.6
Aa31LG4G17420 Aethionema arabicum HOM05D007457 ORTHO05D009435 3.2e-24 115.5 101 54.5
COL.COLO4_14297 Corchorus olitorius HOM05D007457 ORTHO05D009435 3.2e-24 115.5 99 55.6
Gohir.A09G041365 Gossypium hirsutum HOM05D007457 ORTHO05D009435 3.2e-24 115.5 76 65.8
BcaC09g49913 Brassica carinata HOM05D007457 ORTHO05D009435 4.2e-24 115.2 101 55.4
Manes.14G026700 Manihot esculenta HOM05D007457 ORTHO05D009435 4.2e-24 115.2 144 47.2
Rhsim03G0179800 Rhododendron simsii HOM05D007457 ORTHO05D009435 4.2e-24 115.2 99 54.5
Thecc.03G175400 Theobroma cacao HOM05D007457 ORTHO05D009435 4.2e-24 115.2 76 65.8
Thhalv10010222m.g Eutrema salsugineum HOM05D007457 ORTHO05D009435 5.5e-24 114.8 104 56.7
BolC1t03073H Brassica oleracea HOM05D007457 ORTHO05D009435 9.4e-24 114.0 76 67.1
Sp5g13150 Schrenkiella parvula HOM05D007457 ORTHO05D009435 9.4e-24 114.0 102 53.9
C01p31350 Brassica napus HOM05D007457 ORTHO05D009435 1.2e-23 113.6 101 55.4
CARHR157710 Cardamine hirsuta HOM05D007457 ORTHO05D009435 1.2e-23 113.6 104 55.8
EL10Ac3g05665 Beta vulgaris HOM05D007457 ORTHO05D009435 1.6e-23 113.2 99 56.6
BcaB05g22976 Brassica carinata HOM05D007457 ORTHO05D009435 1.6e-23 113.2 101 55.4
Eucgr.K00246 Eucalyptus grandis HOM05D007457 ORTHO05D009435 1.6e-23 113.2 76 64.5
Gohir.D09G042000 Gossypium hirsutum HOM05D007457 ORTHO05D009435 1.6e-23 113.2 76 64.5
Gorai.006G048300 Gossypium raimondii HOM05D007457 ORTHO05D009435 1.6e-23 113.2 76 64.5
HanXRQChr15g0482951 Helianthus annuus HOM05D007457 ORTHO05D009435 1.6e-23 113.2 99 55.6
Nn6g33538 Nelumbo nucifera HOM05D007457 ORTHO05D009435 2.7e-23 112.5 143 46.2
Atru.chr1.473 Acer truncatum HOM05D007457 ORTHO05D009435 3.6e-23 112.1 99 53.5
Peaxi162Scf00915g00040 Petunia axillaris HOM05D007457 ORTHO05D009435 3.6e-23 112.1 99 56.6
unitig_747.g21768 Utricularia gibba HOM05D007457 ORTHO05D009435 3.6e-23 112.1 76 60.5
MSTRG.27120 Avicennia marina HOM05D007457 ORTHO05D009435 6.1e-23 111.3 76 64.5
AUR62015996 Chenopodium quinoa HOM05D007457 ORTHO05D009435 6.1e-23 111.3 99 55.6
Nitab4.5_0003365g0030 Nicotiana tabacum HOM05D007457 ORTHO05D009435 6.1e-23 111.3 99 54.5
Sc13g0008580 Simmondsia chinensis HOM05D007457 ORTHO05D009435 6.1e-23 111.3 104 52.9
Sed0003153 Sechium edule HOM05D007457 ORTHO05D009435 7.9e-23 110.9 99 55.6
PGR142G3430 Punica granatum HOM05D007457 ORTHO05D009435 1.0e-22 110.5 97 54.6
AUR62021203 Chenopodium quinoa HOM05D007457 ORTHO05D009435 1.8e-22 109.8 74 66.2
Potri.015G142800 Populus trichocarpa HOM05D007457 ORTHO05D009435 3.0e-22 109.0 144 45.1
QL09p029389 Quercus lobata HOM05D007457 ORTHO05D009435 3.0e-22 109.0 122 48.4
Hund04734 Selenicereus undatus HOM05D007457 ORTHO05D009435 3.0e-22 109.0 76 63.2
Dinv28451 Davidia involucrata HOM05D007457 ORTHO05D009435 5.1e-22 108.2 99 55.6
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 8.8e-22 107.5 76 61.8
MELO3C006899.2 Cucumis melo HOM05D007457 ORTHO05D009435 8.8e-22 107.5 99 52.5
Carub.0005s1507 Capsella rubella HOM05D007457 ORTHO05D009435 1.1e-21 107.1 101 53.5
Cpa.g.sc107.42 Carica papaya HOM05D007457 ORTHO05D009435 1.5e-21 106.7 99 54.5
Ciclev10004614m.g Citrus clementina HOM05D007457 ORTHO05D009435 1.5e-21 106.7 98 52.0
CsaV3_3G017010 Cucumis sativus L. HOM05D007457 ORTHO05D009435 1.5e-21 106.7 76 63.2
Cc02_g03100 Coffea canephora HOM05D007457 ORTHO05D009435 2.0e-21 106.3 99 50.5
Lsat_1_v5_gn_3_64061 Lactuca sativa HOM05D007457 ORTHO05D009435 2.6e-21 105.9 99 52.5
Sabra15G0152800 Salix brachista HOM05D007457 ORTHO05D006729 2.6e-21 105.9 99 53.5
PGSC0003DMG400014289 Solanum tuberosum HOM05D007457 ORTHO05D009435 3.3e-21 105.5 99 52.5
ECA234G0644 Erigeron canadensis HOM05D007457 ORTHO05D009435 5.7e-21 104.8 99 50.5
CAN.G913.2 Capsicum annuum HOM05D007457 ORTHO05D009435 7.4e-21 104.4 99 52.5
QL09p014434 Quercus lobata HOM05D007457 ORTHO05D009435 7.4e-21 104.4 83 61.4
Solyc03g025900.3 Solanum lycopersicum HOM05D007457 ORTHO05D009435 7.4e-21 104.4 99 52.5
Sopen03g004710 Solanum pennellii HOM05D007457 ORTHO05D009435 7.4e-21 104.4 99 52.5
DCAR_009359 Daucus carota HOM05D007457 ORTHO05D009435 1.3e-20 103.6 74 62.2
Haze_13725 Corylus avellana HOM05D007457 ORTHO05D009435 4.8e-20 101.7 122 44.3
THA.LOC104798924 Tarenaya hassleriana HOM05D007457 ORTHO05D009435 4.8e-20 101.7 113 47.8
PSO478G1701 Papaver somniferum HOM05D007457 ORTHO05D009435 6.3e-20 101.3 99 49.5
Nitab4.5_0000716g0160 Nicotiana tabacum HOM05D007457 ORTHO05D009435 5.3e-19 98.2 111 45.9
ClCG05G007970 Citrullus lanatus HOM05D007457 ORTHO05D009435 6.9e-19 97.8 95 49.5
MBI17_g34336_MAGBIO Magnolia biondii HOM05D007457 ORTHO05D009435 6.9e-19 97.8 104 49.0
Eucgr.L01882 Eucalyptus grandis HOM05D007457 ORTHO05D009435 1.2e-18 97.1 76 59.2
PSO782G2212 Papaver somniferum HOM05D007457 ORTHO05D009435 1.2e-18 97.1 99 48.5
AL5G28420 Arabidopsis lyrata HOM05D007457 ORTHO05D009435 2.0e-18 96.3 61 70.5
SHI13794 Sapria himalayana HOM05D007457 ORTHO05D009435 1.3e-17 93.6 76 56.6
Zm00001eb259890 Zea mays HOM05D007457 ORTHO05D009435 1.3e-17 93.6 76 55.3
ATR0680G303 Amborella trichopoda HOM05D007457 ORTHO05D009435 1.2e-15 87.0 99 43.4
Ah.07g207290 Amaranthus hybridus HOM05D007457 ORTHO05D009435 7.9e-15 84.3 52 73.1


User provided reference genes

Program Settings