Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G168300 Glycine max HOM05D006010 ORTHO05D007381 8.9e-175 617.1 367 100.0
Glyma.02G082600 Glycine max HOM05D006010 ORTHO05D007381 1.8e-135 486.5 327 87.8
Phvul.004G098200 Phaseolus vulgaris HOM05D006010 ORTHO05D007381 1.9e-124 449.9 327 76.1
VMungo0464G0699 Vigna mungo HOM05D006010 ORTHO05D007381 2.9e-109 399.4 297 72.7
Ca_05962_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 5.5e-108 395.2 328 69.8
Medtr5g077800 Medicago truncatula HOM05D006010 ORTHO05D007381 1.8e-106 390.2 332 70.8
Lalb_Chr10g0104261 Lupinus albus HOM05D006010 ORTHO05D007381 3.7e-104 382.5 330 66.4
Psat2g045640 Pisum sativum HOM05D006010 ORTHO05D007381 6.1e-99 365.2 333 66.7
Lj4g0009716 Lotus japonicus HOM05D006010 ORTHO05D007381 3.9e-98 362.5 328 65.2
arahy.Tifrunner.gnm1.ann1.14A9Q3 Arachis hypogaea HOM05D006010 ORTHO05D007381 4.4e-97 359.0 329 66.9
arahy.Tifrunner.gnm1.ann1.RW4QB8 Arachis hypogaea HOM05D006010 ORTHO05D007381 2.8e-96 356.3 333 66.1
arahy.Tifrunner.gnm1.ann1.ZG5C6W Arachis hypogaea HOM05D006010 ORTHO05D007381 2.6e-94 349.7 329 66.3
TPR.G23647 Trifolium pratense HOM05D006010 ORTHO05D007381 7.2e-92 341.7 298 65.4
CiPaw.03G074500 Carya illinoinensis HOM05D006010 ORTHO05D007381 8.2e-80 301.6 331 53.8
Prupe.2G048000 Prunus persica HOM05D006010 ORTHO05D007381 2.7e-75 286.6 327 51.7
Cpa.g.sc116.81 Carica papaya HOM05D006010 ORTHO05D007381 3.6e-75 286.2 371 48.5
Haze_14288 Corylus avellana HOM05D006010 ORTHO05D007381 4.0e-74 282.7 329 55.9
TWI53G0527 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 3.4e-73 279.6 327 53.2
MD02G1273300 Malus domestica HOM05D006010 ORTHO05D007381 7.5e-73 278.5 327 50.8
Actinidia35721 Actinidia chinensis HOM05D006010 ORTHO05D007381 4.8e-72 275.8 346 50.3
Cfa007784 Carpinus fangiana HOM05D006010 ORTHO05D007381 6.3e-72 275.4 329 53.5
RcHm_v2.0_Chr3g0492111 Rosa chinensis HOM05D006010 ORTHO05D007381 3.1e-71 273.1 327 50.2
QL12p000853 Quercus lobata HOM05D006010 ORTHO05D007381 4.1e-71 272.7 381 45.9
Sed0022983 Sechium edule HOM05D006010 ORTHO05D007381 2.7e-70 270.0 326 51.2
FAN28G0351 Fragaria x ananassa HOM05D006010 ORTHO05D007381 5.9e-70 268.9 341 48.7
Atru.chr11.39 Acer truncatum HOM05D006010 ORTHO05D007381 7.7e-70 268.5 329 55.9
Potri.017G135500 Populus trichocarpa HOM05D006010 ORTHO05D007381 1.3e-69 267.7 339 52.8
Rhsim10G0180400 Rhododendron simsii HOM05D006010 ORTHO05D007381 2.9e-69 266.5 330 47.9
Ciclev10026000m.g Citrus clementina HOM05D006010 ORTHO05D007381 3.8e-69 266.2 352 49.4
FAN28G1345 Fragaria x ananassa HOM05D006010 ORTHO05D007381 8.6e-69 265.0 328 52.7
Cc02_g11480 Coffea canephora HOM05D006010 ORTHO05D007381 9.5e-68 261.5 328 49.4
Hma1.2p1_0249F.1_g102390 Hydrangea macrophylla HOM05D006010 ORTHO05D007381 9.5e-68 261.5 328 51.5
FAN19G0427 Fragaria x ananassa HOM05D006010 ORTHO05D007381 6.1e-67 258.8 328 49.1
Sed0003139 Sechium edule HOM05D006010 ORTHO05D007381 1.0e-66 258.1 328 51.2
Sabra17G0114300 Salix brachista HOM05D006010 ORTHO05D007381 1.4e-66 257.7 348 50.0
Sabra17G0111300 Salix brachista HOM05D006010 ORTHO05D007381 1.8e-66 257.3 348 50.3
GSVIVG01015997001 Vitis vinifera HOM05D006010 ORTHO05D007381 4.0e-66 256.1 406 45.1
FvH4_1g30030 Fragaria vesca HOM05D006010 ORTHO05D007381 5.2e-66 255.8 328 48.8
FAN23G2851 Fragaria x ananassa HOM05D006010 ORTHO05D007381 8.9e-66 255.0 343 50.4
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 8.9e-66 255.0 229 65.5
Peaxi162Scf00464g00430 Petunia axillaris HOM05D006010 ORTHO05D007381 5.7e-65 252.3 335 49.0
MELO3C020924.2 Cucumis melo HOM05D006010 ORTHO05D007381 9.8e-65 251.5 330 50.6
CsaV3_2G017210 Cucumis sativus L. HOM05D006010 ORTHO05D007381 9.8e-65 251.5 330 48.2
PGSC0003DMG400013242 Solanum tuberosum HOM05D006010 ORTHO05D007381 9.8e-65 251.5 330 49.4
Eucgr.F02881 Eucalyptus grandis HOM05D006010 ORTHO05D007381 4.9e-64 249.2 332 51.2
Lsat_1_v5_gn_3_65880 Lactuca sativa HOM05D006010 ORTHO05D007381 4.9e-64 249.2 334 47.3
PGR004G1862 Punica granatum HOM05D006010 ORTHO05D007381 4.9e-64 249.2 329 48.3
SalBow1G7757 Salvia bowleyana HOM05D006010 ORTHO05D007381 1.1e-63 248.1 342 48.8
Sopen11g006280 Solanum pennellii HOM05D006010 ORTHO05D007381 4.1e-63 246.1 335 48.7
MSTRG.15654 Avicennia marina HOM05D006010 ORTHO05D007381 2.0e-62 243.8 339 47.8
Duzib235G0102 Durio zibethinus HOM05D006010 ORTHO05D007381 5.9e-62 242.3 340 48.8
ClCG05G010670 Citrullus lanatus HOM05D006010 ORTHO05D007381 1.1e-60 238.0 328 45.7
CAN.G222.64 Capsicum annuum HOM05D006010 ORTHO05D007381 1.5e-60 237.7 339 47.5
Migut.K00936 Erythranthe guttata HOM05D006010 ORTHO05D007381 1.2e-59 234.6 330 48.5
HanXRQChr15g0482991 Helianthus annuus HOM05D006010 ORTHO05D007381 1.6e-59 234.2 338 49.7
CANSAT01G2297 Cannabis sativa HOM05D006010 ORTHO05D007381 3.6e-59 233.0 361 43.8
ECA236G4224 Erigeron canadensis HOM05D006010 ORTHO05D007381 1.4e-58 231.1 333 45.6
Oeu048940.2 Olea europaea HOM05D006010 ORTHO05D007381 4.0e-58 229.6 358 45.8
TAR623G0083 Trochodendron aralioides HOM05D006010 ORTHO05D007381 1.5e-57 227.6 364 49.7
EL10Ac3g05516 Beta vulgaris HOM05D006010 ORTHO05D007381 7.5e-57 225.3 324 44.1
Nn3g17023 Nelumbo nucifera HOM05D006010 ORTHO05D007381 9.8e-57 224.9 353 43.3
vmacro20589 Vaccinium macrocarpon HOM05D006010 ORTHO05D007381 2.2e-56 223.8 278 49.3
Thecc.06G019600 Theobroma cacao HOM05D006010 ORTHO05D007381 2.9e-56 223.4 371 43.9
MD07G1042200 Malus domestica HOM05D006010 ORTHO05D007381 1.1e-55 221.5 327 45.6
Actinidia28796 Actinidia chinensis HOM05D006010 ORTHO05D007381 3.9e-53 213.0 300 43.7
Solyc11g011490.2 Solanum lycopersicum HOM05D006010 ORTHO05D007381 4.3e-52 209.5 253 51.4
unitig_0.g1692 Utricularia gibba HOM05D006010 ORTHO05D007381 1.2e-51 208.0 346 41.3
AUR62016215 Chenopodium quinoa HOM05D006010 ORTHO05D007381 1.6e-51 207.6 328 46.0
SGA_v2.0_scaffold115G32097 Striga asiatica HOM05D006010 ORTHO05D007381 2.1e-51 207.2 322 47.2
THA.LOC104827184 Tarenaya hassleriana HOM05D006010 ORTHO05D007381 8.0e-51 205.3 334 46.7
Lj2A517G41 Lonicera japonica HOM05D006010 ORTHO05D007381 1.2e-49 201.4 231 51.9
Hund11982 Selenicereus undatus HOM05D006010 ORTHO05D007381 1.2e-49 201.4 326 44.5
Ca_05837_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 3.4e-49 199.9 189 67.2
CDE09G0547 Ceratophyllum demersum HOM05D006010 ORTHO05D007381 4.4e-49 199.5 365 38.6
Sp3g01890 Schrenkiella parvula HOM05D006010 ORTHO05D007381 4.4e-49 199.5 336 48.5
Ca_05839_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 9.8e-49 198.4 134 79.1
COL.COLO4_31121 Corchorus olitorius HOM05D006010 ORTHO05D007381 3.7e-48 196.4 418 39.7
Thhalv10021193m.g Eutrema salsugineum HOM05D006010 ORTHO05D007381 2.4e-47 193.7 247 49.8
Sed0026765 Sechium edule HOM05D006010 ORTHO05D007381 4.1e-47 193.0 325 42.5
Sc22g0001300 Simmondsia chinensis HOM05D006010 ORTHO05D007381 1.6e-46 191.0 260 49.2
GSVIVG01015998001 Vitis vinifera HOM05D006010 ORTHO05D007381 1.6e-46 191.0 272 47.4
AL3G12280 Arabidopsis lyrata HOM05D006010 ORTHO05D007381 1.0e-45 188.3 249 49.0
AUR62039273 Chenopodium quinoa HOM05D006010 ORTHO05D007381 5.0e-45 186.0 288 45.8
DCAR_014157 Daucus carota HOM05D006010 ORTHO05D007381 5.0e-45 186.0 328 42.7
AT3G02860 Arabidopsis thaliana HOM05D006010 ORTHO05D007381 1.5e-44 184.5 249 48.2
A05p44250 Brassica napus HOM05D006010 ORTHO05D007381 1.9e-44 184.1 248 49.6
BraA06t23281Z Brassica rapa HOM05D000919 ORTHO05D004442 1.9e-44 184.1 248 49.6
Carub.0003s0196 Capsella rubella HOM05D006010 ORTHO05D007381 2.5e-44 183.7 286 42.7
BcaC05g30500 Brassica carinata HOM05D000919 ORTHO05D004442 1.8e-42 177.6 338 45.3
C09p75990 Brassica napus HOM05D006010 ORTHO05D007381 3.1e-42 176.8 248 49.6
BolC5t35058H Brassica oleracea HOM05D006010 ORTHO05D007381 3.1e-42 176.8 248 49.6
FAN26G2228 Fragaria x ananassa HOM05D006010 ORTHO05D007381 3.1e-42 176.8 283 42.0
GSVIVG01016007001 Vitis vinifera HOM05D006010 ORTHO05D007381 2.6e-41 173.7 282 48.6
Aa31LG5G13330 Aethionema arabicum HOM05D006010 ORTHO05D007381 3.7e-40 169.9 375 39.7
Gohir.A10G157800 Gossypium hirsutum HOM05D006010 ORTHO05D007381 5.4e-39 166.0 417 36.5
CSS0039891 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 7.1e-39 165.6 129 70.5
Os05g0495100 Oryza sativa ssp. japonica HOM05D006010 ORTHO05D007381 1.2e-38 164.9 371 37.5
Ah.05g176710 Amaranthus hybridus HOM05D006010 ORTHO05D007381 1.0e-37 161.8 388 34.3
Gohir.D10G083400 Gossypium hirsutum HOM05D006010 ORTHO05D007381 1.7e-37 161.0 421 35.9
Gorai.011G090700 Gossypium raimondii HOM05D006010 ORTHO05D007381 3.0e-37 160.2 419 35.8
Zm00001eb291600 Zea mays HOM05D006010 ORTHO05D007381 8.6e-37 158.7 350 38.0
CARHR076870 Cardamine hirsuta HOM05D006010 ORTHO05D007381 1.5e-36 157.9 246 43.9
Manes.07G077600 Manihot esculenta HOM05D006010 ORTHO05D007381 4.7e-35 152.9 284 39.8
TWI74G0222 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 1.3e-32 144.8 261 41.0
PSO478G0898 Papaver somniferum HOM05D006010 ORTHO05D007381 8.4e-32 142.1 261 41.0
SEGI_17538 Sequoiadendron giganteum HOM05D006010 ORTHO05D007381 7.1e-31 139.0 236 41.9
PSO017G1892 Papaver somniferum HOM05D006010 ORTHO05D007381 1.2e-30 138.3 282 39.7
GSVIVG01016005001 Vitis vinifera HOM05D006010 ORTHO05D007381 2.3e-29 134.0 195 46.7
FAN25G0538 Fragaria x ananassa HOM05D006010 ORTHO05D007381 8.7e-29 132.1 148 52.7
AagrBONN_evm.TU.Sc2ySwM_369.381 Anthoceros agrestis HOM05D006010 ORTHO05D007381 1.9e-28 131.0 246 38.2
Mapoly0044s0136 Marchantia polymorpha HOM05D006010 ORTHO05D007381 2.5e-28 130.6 330 42.4
ATR0320G006 Amborella trichopoda HOM05D006010 ORTHO05D007381 8.4e-24 115.5 176 46.6
Sed0023512 Sechium edule HOM05D006010 ORTHO05D007381 5.4e-23 112.8 68 77.9
Sed0018686 Sechium edule HOM05D006010 ORTHO05D007381 7.1e-23 112.5 65 80.0
GSVIVG01016036001 Vitis vinifera HOM05D006010 ORTHO05D007381 3.0e-21 107.1 67 80.6
Glyma.14G212900 Glycine max HOM05D026408 ORTHO05D029776 5.1e-21 106.3 136 50.7
TPR.G36575 Trifolium pratense HOM05D006010 ORTHO05D007381 1.5e-20 104.8 86 66.3
Aqoxy3G00232 Aquilegia oxysepala HOM05D006010 ORTHO05D007381 3.3e-20 103.6 124 64.5
ATR0320G008 Amborella trichopoda HOM05D006010 ORTHO05D007381 4.3e-20 103.2 140 45.0
SHI30126 Sapria himalayana HOM05D006010 ORTHO05D007381 4.3e-20 103.2 139 50.4
FAN21G0982 Fragaria x ananassa HOM05D006010 ORTHO05D007381 9.9e-17 92.0 137 43.1
VMungo0647G0061 Vigna mungo HOM05D026408 ORTHO05D029776 5.4e-15 86.3 204 34.3
Phvul.008G238000 Phaseolus vulgaris HOM05D026408 ORTHO05D029776 1.6e-14 84.7 170 38.2
SHI30124 Sapria himalayana HOM05D006010 ORTHO05D007381 3.0e-13 80.5 116 41.4
CSS0001849 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 6.7e-13 79.3 110 44.5
CSS0044569 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 6.7e-13 79.3 110 44.5
Lj2A517G40 Lonicera japonica HOM05D006010 ORTHO05D007381 8.1e-11 72.4 103 42.7
Nitab4.5_0011135g0050 Nicotiana tabacum HOM05D006010 ORTHO05D007381 1.3e-08 65.1 140 32.9
Pp3c12_7630 Physcomitrium patens HOM05D006010 ORTHO05D007381 1.3e-08 65.1 139 33.8
CSS0015748 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 2.7e-06 57.4 90 42.2
CSS0044039 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 2.7e-06 57.4 90 42.2


User provided reference genes

Program Settings