Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G080700 Glycine max HOM05D006268 ORTHO05D008118 5.0e-185 651.0 332 100.0
Glyma.03G093200 Glycine max HOM05D006268 ORTHO05D008118 3.3e-168 595.1 332 90.7
VMungo0331G0592 Vigna mungo HOM05D006268 ORTHO05D008118 6.0e-162 574.3 333 87.7
Phvul.010G033866 Phaseolus vulgaris HOM05D006268 ORTHO05D008118 1.7e-161 572.8 333 87.1
Lj3g0019214 Lotus japonicus HOM05D006268 ORTHO05D008118 3.2e-155 552.0 335 84.5
Lalb_Chr07g0194551 Lupinus albus HOM05D006268 ORTHO05D008118 1.1e-152 543.5 334 81.1
Ca_23170_v3 Cicer arietinum L. HOM05D006268 ORTHO05D008118 8.4e-148 527.3 335 80.9
Psat4g207400 Pisum sativum HOM05D006268 ORTHO05D008118 4.7e-143 511.5 330 78.2
Cfa010996 Carpinus fangiana HOM05D006268 ORTHO05D008118 1.9e-136 489.6 336 74.4
FvH4_7g08020 Fragaria vesca HOM05D006268 ORTHO05D008118 5.6e-136 488.0 332 75.0
CANSAT54G1338 Cannabis sativa HOM05D006268 ORTHO05D008118 6.2e-135 484.6 335 73.4
FAN06G0712 Fragaria x ananassa HOM05D006268 ORTHO05D008118 6.2e-135 484.6 333 75.1
FAN03G0807 Fragaria x ananassa HOM05D006268 ORTHO05D008118 2.4e-134 482.6 333 74.8
Medtr8g010550 Medicago truncatula HOM05D006268 ORTHO05D008118 6.9e-134 481.1 334 74.0
Haze_02942 Corylus avellana HOM05D006268 ORTHO05D008118 1.5e-133 479.9 336 73.2
RcHm_v2.0_Chr1g0341291 Rosa chinensis HOM05D006268 ORTHO05D008118 3.4e-133 478.8 333 73.9
MD00G1098400 Malus domestica HOM05D006268 ORTHO05D008118 4.5e-133 478.4 330 73.6
TAR375G0229 Trochodendron aralioides HOM05D006268 ORTHO05D008118 5.8e-133 478.0 335 71.6
CiPaw.13G019100 Carya illinoinensis HOM05D006268 ORTHO05D008118 7.6e-133 477.6 338 73.4
Potri.002G238300 Populus trichocarpa HOM05D006268 ORTHO05D008118 3.8e-132 475.3 330 72.1
Prupe.2G109200 Prunus persica HOM05D006268 ORTHO05D008118 1.6e-130 469.9 334 70.7
CSS0005578 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 4.6e-130 468.4 328 71.0
Sed0013667 Sechium edule HOM05D006268 ORTHO05D008118 6.0e-130 468.0 334 69.2
Eucgr.D01130 Eucalyptus grandis HOM05D006268 ORTHO05D008118 3.0e-129 465.7 336 69.6
Sabra02G0181600 Salix brachista HOM05D006268 ORTHO05D008118 3.0e-129 465.7 327 71.6
TWI59G0917 Tripterygium wilfordii HOM05D006268 ORTHO05D008118 5.1e-129 464.9 331 71.0
FAN01G0355 Fragaria x ananassa HOM05D006268 ORTHO05D008118 4.3e-128 461.8 377 66.0
MELO3C006233.2 Cucumis melo HOM05D006268 ORTHO05D008118 7.4e-128 461.1 334 69.5
QL04p024264 Quercus lobata HOM05D006268 ORTHO05D008118 9.6e-128 460.7 360 67.8
GSVIVG01016051001 Vitis vinifera HOM05D006268 ORTHO05D008118 2.1e-127 459.5 330 69.7
CsaV3_3G010120 Cucumis sativus L. HOM05D006268 ORTHO05D008118 2.4e-126 456.1 334 68.9
Actinidia33290 Actinidia chinensis HOM05D006268 ORTHO05D008118 4.0e-126 455.3 335 69.3
Nitab4.5_0001209g0060 Nicotiana tabacum HOM05D006268 ORTHO05D008118 1.2e-125 453.8 332 68.4
arahy.Tifrunner.gnm1.ann1.EHLP6C Arachis hypogaea HOM05D006268 ORTHO05D008118 2.6e-125 452.6 332 73.8
Ciclev10021110m.g Citrus clementina HOM05D006268 ORTHO05D008118 4.5e-125 451.8 329 69.0
arahy.Tifrunner.gnm1.ann1.V3PJPX Arachis hypogaea HOM05D006268 ORTHO05D008118 1.3e-124 450.3 332 73.5
CAN.G1551.1 Capsicum annuum HOM05D006268 ORTHO05D008118 2.2e-124 449.5 332 67.8
DCAR_029548 Daucus carota HOM05D006268 ORTHO05D008118 1.1e-123 447.2 336 67.3
Nitab4.5_0001476g0040 Nicotiana tabacum HOM05D006268 ORTHO05D008118 1.4e-123 446.8 332 68.1
PGR083G0810 Punica granatum HOM05D006268 ORTHO05D008118 2.4e-123 446.0 336 67.6
PGSC0003DMG400001820 Solanum tuberosum HOM05D006268 ORTHO05D008118 2.4e-123 446.0 332 67.8
Sopen01g032530 Solanum pennellii HOM05D006268 ORTHO05D008118 4.2e-123 445.3 331 68.9
Solyc01g080940.3 Solanum lycopersicum HOM05D006268 ORTHO05D008118 7.1e-123 444.5 332 68.4
Nn1g00551 Nelumbo nucifera HOM05D006268 ORTHO05D008118 1.6e-122 443.4 336 66.4
MSTRG.4977 Avicennia marina HOM05D006268 ORTHO05D008118 6.0e-122 441.4 332 67.5
PSO063G1446 Papaver somniferum HOM05D006268 ORTHO05D008118 7.9e-122 441.0 335 66.0
vmacro21105 Vaccinium macrocarpon HOM05D006268 ORTHO05D008118 1.8e-121 439.9 332 66.6
PSO782G1498 Papaver somniferum HOM05D006268 ORTHO05D008118 2.3e-121 439.5 335 65.7
Thecc.03G001300 Theobroma cacao HOM05D006268 ORTHO05D008118 6.7e-121 438.0 333 68.5
Gorai.N008000 Gossypium raimondii HOM05D006268 ORTHO05D008118 2.5e-120 436.0 331 68.6
Rhsim01G0145800 Rhododendron simsii HOM05D006268 ORTHO05D008118 3.3e-120 435.6 332 65.1
Gohir.A06G169600 Gossypium hirsutum HOM05D006268 ORTHO05D008118 4.3e-120 435.3 334 68.0
Cc02_g26120 Coffea canephora HOM05D006268 ORTHO05D008118 2.1e-119 433.0 334 66.8
Aqoxy3G02409 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 8.2e-119 431.0 336 64.9
Aqoxy3G02437 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 8.2e-119 431.0 336 64.9
Sc26g0001930 Simmondsia chinensis HOM05D006268 ORTHO05D008118 2.4e-118 429.5 333 65.2
CSS0033423 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 6.9e-118 427.9 328 66.5
ClCG05G002670 Citrullus lanatus HOM05D006268 ORTHO05D008118 1.2e-117 427.2 334 66.2
HanXRQChr04g0123661 Helianthus annuus HOM05D006268 ORTHO05D008118 2.0e-117 426.4 334 65.9
COL.COLO4_19510 Corchorus olitorius HOM05D006268 ORTHO05D006513 2.2e-116 422.9 331 66.5
Migut.N01815 Erythranthe guttata HOM05D006268 ORTHO05D008118 2.2e-116 422.9 330 63.6
TPR.G9770 Trifolium pratense HOM05D006268 ORTHO05D008118 3.8e-116 422.2 329 66.0
Duzib128G0100 Durio zibethinus HOM05D006268 ORTHO05D008118 4.9e-116 421.8 347 64.3
Lsat_1_v5_gn_7_10860 Lactuca sativa HOM05D006268 ORTHO05D008118 5.5e-115 418.3 326 66.3
SalBow4G0743 Salvia bowleyana HOM05D006268 ORTHO05D008118 7.9e-114 414.5 331 64.0
Hund26937 Selenicereus undatus HOM05D006268 ORTHO05D008118 1.0e-113 414.1 330 64.2
EL10Ac1g00692 Beta vulgaris HOM05D006268 ORTHO05D008118 1.8e-113 413.3 329 62.6
Atru.BG.53.p Acer truncatum HOM05D006268 ORTHO05D008118 4.3e-112 408.7 320 68.8
Ah.06g189690 Amaranthus hybridus HOM05D006268 ORTHO05D008118 4.3e-112 408.7 345 61.4
AUR62023342 Chenopodium quinoa HOM05D006268 ORTHO05D008118 5.7e-112 408.3 330 62.7
unitig_22.g5778 Utricularia gibba HOM05D006268 ORTHO05D008118 2.7e-106 389.4 327 61.5
ATR0049G059 Amborella trichopoda HOM05D006268 ORTHO05D008118 3.6e-106 389.0 341 59.5
Manes.08G055700 Manihot esculenta HOM05D006268 ORTHO05D008118 4.6e-106 388.7 290 67.6
C02p13500 Brassica napus HOM05D006268 ORTHO05D008118 2.5e-104 382.9 332 59.6
BolC2t07462H Brassica oleracea HOM05D006268 ORTHO05D008118 2.5e-104 382.9 332 59.6
BcaB05g22409 Brassica carinata HOM05D006268 ORTHO05D008118 4.3e-104 382.1 332 59.6
BcaC03g14111 Brassica carinata HOM05D006268 ORTHO05D008118 7.4e-104 381.3 326 60.1
BraA02t05859Z Brassica rapa HOM05D006268 ORTHO05D008118 1.4e-102 377.1 326 59.8
Aa31LG11G10 Aethionema arabicum HOM05D006268 ORTHO05D008118 4.1e-102 375.6 329 59.3
A02p07860 Brassica napus HOM05D006268 ORTHO05D008118 6.9e-102 374.8 326 59.5
AL8G34320 Arabidopsis lyrata HOM05D006268 ORTHO05D008118 5.9e-101 371.7 334 57.8
HPP92_028001 Vanilla planifolia HOM05D006268 ORTHO05D008118 1.0e-100 370.9 332 56.9
Thhalv10014126m.g Eutrema salsugineum HOM05D006268 ORTHO05D008118 3.8e-100 369.0 332 57.8
Os03g0390700 Oryza sativa ssp. japonica HOM05D006268 ORTHO05D008118 1.4e-99 367.1 324 60.2
THA.LOC104799599 Tarenaya hassleriana HOM05D006268 ORTHO05D008118 5.5e-99 365.2 335 56.7
SEGI_16160 Sequoiadendron giganteum HOM05D006268 ORTHO05D008118 2.1e-98 363.2 354 55.4
FAN10G2079 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.8e-97 360.1 300 66.3
AUR62013813 Chenopodium quinoa HOM05D006268 ORTHO05D008118 3.9e-97 359.0 327 58.1
CARHR272020 Cardamine hirsuta HOM05D006268 ORTHO05D008118 2.6e-96 356.3 334 56.0
AT5G58220 Arabidopsis thaliana HOM05D006268 ORTHO05D008118 3.7e-95 352.4 332 56.3
Zm00001eb392560 Zea mays HOM05D006268 ORTHO05D008118 8.2e-95 351.3 324 56.8
ECA236G2174 Erigeron canadensis HOM05D006268 ORTHO05D008118 1.1e-94 350.9 307 59.9
Sp6g19880 Schrenkiella parvula HOM05D006268 ORTHO05D008118 3.1e-94 349.4 324 56.5
Carub.0008s1876 Capsella rubella HOM05D006268 ORTHO05D008118 3.4e-93 345.9 332 56.0
Dinv43994 Davidia involucrata HOM05D006268 ORTHO05D008118 7.4e-88 328.2 243 69.1
SGA_v2.0_scaffold95G28736 Striga asiatica HOM05D006268 ORTHO05D008118 1.1e-78 297.7 246 64.6
CDE04G2879 Ceratophyllum demersum HOM05D006268 ORTHO05D008118 1.0e-76 291.2 274 56.9
SMO367G0371 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 1.5e-75 287.3 364 44.5
Pp3c4_10360 Physcomitrium patens HOM05D006268 ORTHO05D008118 2.0e-72 276.9 331 48.3
Mapoly0090s0043 Marchantia polymorpha HOM05D006268 ORTHO05D008118 5.9e-69 265.4 335 46.9
Lj7C555G14 Lonicera japonica HOM05D006268 ORTHO05D008118 3.5e-61 239.6 180 68.3
CBR_g30589 Chara braunii HOM05D006268 ORTHO05D008118 2.9e-60 236.5 464 35.8
PRCOL_00004243 Prasinoderma coloniale HOM05D006268 ORTHO05D008118 1.7e-55 220.7 332 40.7
AagrBONN_evm.TU.Sc2ySwM_228.2734 Anthoceros agrestis HOM05D006268 ORTHO05D008118 1.9e-54 217.2 314 41.4
BcaB05g22411 Brassica carinata HOM05D006268 ORTHO05D008118 1.9e-54 217.2 187 60.4
Cre17.g735950 Chlamydomonas reinhardtii HOM05D006268 ORTHO05D008118 1.9e-51 207.2 333 38.7
Lj7C555T10 Lonicera japonica HOM05D006268 ORTHO05D008118 7.3e-51 205.3 150 68.7
DCAR_025012 Daucus carota HOM05D006268 ORTHO05D008118 4.9e-47 192.6 171 60.8
Cpa.g.sc74.89 Carica papaya HOM05D006268 ORTHO05D008118 2.4e-38 163.7 183 53.6
SMO197G0011 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 2.7e-37 160.2 147 52.4
SMO367G0431 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 1.7e-36 157.5 169 48.5
SHI28983 Sapria himalayana HOM05D006268 ORTHO05D008118 3.3e-35 153.3 160 51.2
Sc26g0001910 Simmondsia chinensis HOM05D006268 ORTHO05D008118 7.6e-32 142.1 102 66.7
MCO07G440 Micromonas commoda HOM05D006268 ORTHO05D008118 4.9e-31 139.4 150 48.7
BolC9t57859H Brassica oleracea HOM05D006268 ORTHO05D008118 5.3e-25 119.4 81 66.7
MCO05G065 Micromonas commoda HOM05D006268 ORTHO05D008118 3.0e-20 103.6 132 43.2
Hma1.2p1_0076F.1_g039600 Hydrangea macrophylla HOM05D006268 ORTHO05D008118 4.3e-19 99.8 63 66.7
MD02G1236900 Malus domestica HOM05D006268 ORTHO05D008118 7.3e-19 99.0 133 48.1
Oeu050272.1 Olea europaea HOM05D006268 ORTHO05D008118 5.8e-16 89.4 71 54.9
Sabra14G0137200 Salix brachista HOM05D008143 ORTHO05D010256 1.9e-11 74.3 76 51.3
BcaC04g19902 Brassica carinata HOM05D006268 ORTHO05D008118 4.3e-11 73.2 57 56.1
Dinv43550 Davidia involucrata HOM05D006268 ORTHO05D008118 3.7e-10 70.1 43 83.7
Cfa010995 Carpinus fangiana HOM05D006268 ORTHO05D008118 3.1e-09 67.0 58 62.1


User provided reference genes

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