Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G069000 Glycine max HOM05D001715 ORTHO05D004824 3.1e-148 528.5 270 100.0
Glyma.19G055900 Glycine max HOM05D001715 ORTHO05D004824 6.2e-141 504.2 272 95.6
VMungo1383G3508 Vigna mungo HOM05D001715 ORTHO05D004824 1.1e-134 483.4 271 91.1
Phvul.001G096400 Phaseolus vulgaris HOM05D001715 ORTHO05D004824 9.5e-134 480.3 272 90.1
TPR.G1113 Trifolium pratense HOM05D001715 ORTHO05D004824 2.8e-133 478.8 269 89.2
Medtr7g033200 Medicago truncatula HOM05D001715 ORTHO05D004824 8.1e-133 477.2 269 88.8
Lalb_Chr24g0403561 Lupinus albus HOM05D001715 ORTHO05D004824 5.2e-132 474.6 269 89.2
Psat3g166200 Pisum sativum HOM05D001715 ORTHO05D004824 6.8e-132 474.2 270 88.5
Ca_10003_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 4.4e-131 471.5 271 88.6
Lalb_Chr22g0360701 Lupinus albus HOM05D001715 ORTHO05D004824 1.3e-130 469.9 269 87.7
Lj1g0020864 Lotus japonicus HOM05D001715 ORTHO05D004824 3.2e-129 465.3 269 87.4
Ca_12396_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 1.4e-121 439.9 342 70.2
Potri.001G342700 Populus trichocarpa HOM05D001715 ORTHO05D004824 4.6e-120 434.9 270 80.7
arahy.Tifrunner.gnm1.ann1.VP8W98 Arachis hypogaea HOM05D001715 ORTHO05D004824 6.0e-120 434.5 270 83.7
Manes.17G110800 Manihot esculenta HOM05D001715 ORTHO05D004824 1.1e-118 430.3 270 78.9
arahy.Tifrunner.gnm1.ann1.Q5RJ9B Arachis hypogaea HOM05D001715 ORTHO05D004824 1.9e-118 429.5 272 83.1
FAN19G0324 Fragaria x ananassa HOM05D001715 ORTHO05D004824 1.6e-117 426.4 270 77.0
CANSAT64G1664 Cannabis sativa HOM05D001715 ORTHO05D004824 3.1e-116 422.2 271 77.1
FvH4_1g25240 Fragaria vesca HOM05D001715 ORTHO05D004824 4.0e-116 421.8 270 77.0
FAN28G2154 Fragaria x ananassa HOM05D001715 ORTHO05D004824 6.9e-116 421.0 270 76.3
CiPaw.03G045800 Carya illinoinensis HOM05D001715 ORTHO05D004824 4.4e-115 418.3 270 76.3
MD17G1021800 Malus domestica HOM05D001715 ORTHO05D004824 5.8e-115 417.9 272 77.6
Cc07_g00030 Coffea canephora HOM05D001715 ORTHO05D004824 9.9e-115 417.2 270 77.0
Thecc.04G019800 Theobroma cacao HOM05D001715 ORTHO05D004824 2.9e-114 415.6 270 76.3
TWI12G0217 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 1.4e-113 413.3 272 75.7
Ciclev10016259m.g Citrus clementina HOM05D001715 ORTHO05D004824 2.4e-113 412.5 269 75.8
COL.COLO4_29175 Corchorus olitorius HOM05D001715 ORTHO05D004824 2.4e-113 412.5 270 75.6
Lsat_1_v5_gn_4_184360 Lactuca sativa HOM05D001715 ORTHO05D004824 2.4e-113 412.5 270 75.6
Gohir.D11G070100 Gossypium hirsutum HOM05D001715 ORTHO05D004824 5.4e-113 411.4 270 75.2
Gorai.007G075200 Gossypium raimondii HOM05D001715 ORTHO05D004824 5.4e-113 411.4 270 75.2
MD09G1022400 Malus domestica HOM05D001715 ORTHO05D004824 5.4e-113 411.4 272 78.3
AT5G40550 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 7.1e-113 411.0 271 74.9
Carub.0007s3497 Capsella rubella HOM05D001715 ORTHO05D004824 7.1e-113 411.0 273 74.4
CSS0010910 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 9.3e-113 410.6 271 76.4
Duzib147G1449 Durio zibethinus HOM05D001715 ORTHO05D004824 1.2e-112 410.2 270 75.2
TWI12G0250 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 4.6e-112 408.3 272 74.6
TWI12G0372 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 4.6e-112 408.3 272 74.6
TWI12G0380 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 4.6e-112 408.3 272 74.6
HanXRQChr09g0255491 Helianthus annuus HOM05D001715 ORTHO05D004824 7.8e-112 407.5 271 74.9
CARHR148830 Cardamine hirsuta HOM05D001715 ORTHO05D004824 1.0e-111 407.1 270 74.1
Prupe.3G294200 Prunus persica HOM05D001715 ORTHO05D004824 1.0e-111 407.1 272 74.3
THA.LOC104805361 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 1.0e-111 407.1 272 73.2
CARHR261430 Cardamine hirsuta HOM05D001715 ORTHO05D004824 1.3e-111 406.8 270 74.1
FAN23G2554 Fragaria x ananassa HOM05D001715 ORTHO05D004824 1.7e-111 406.4 280 73.2
RcHm_v2.0_Chr2g0123161 Rosa chinensis HOM05D001715 ORTHO05D004824 1.7e-111 406.4 270 74.4
AL5G16870 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 3.0e-111 405.6 271 73.4
Dinv33423 Davidia involucrata HOM05D001715 ORTHO05D004824 3.0e-111 405.6 270 74.4
Sabra16G0222300 Salix brachista HOM05D001715 ORTHO05D004824 3.0e-111 405.6 298 72.5
THA.LOC104825315 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 5.1e-111 404.8 272 72.8
Actinidia36126 Actinidia chinensis HOM05D001715 ORTHO05D004824 6.6e-111 404.4 271 75.3
Atru.chr6.2434 Acer truncatum HOM05D001715 ORTHO05D004824 8.7e-111 404.1 270 75.9
DCAR_015064 Daucus carota HOM05D001715 ORTHO05D004824 1.9e-110 402.9 269 73.6
Cfa007336 Carpinus fangiana HOM05D001715 ORTHO05D004824 2.5e-110 402.5 273 74.0
BcaC06g33817 Brassica carinata HOM05D001715 ORTHO05D004824 3.3e-110 402.1 269 72.9
AL7G49260 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 4.3e-110 401.7 273 73.3
BcaC06g30988 Brassica carinata HOM05D001715 ORTHO05D004824 4.3e-110 401.7 271 72.7
PGR083G0973 Punica granatum HOM05D001715 ORTHO05D004824 7.3e-110 401.0 270 73.3
Gorai.012G065400 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.6e-109 399.8 270 74.4
Aa31LG2G5160 Aethionema arabicum HOM05D001715 ORTHO05D004824 2.8e-109 399.1 269 72.1
Actinidia05979 Actinidia chinensis HOM05D001715 ORTHO05D004824 3.6e-109 398.7 271 73.4
Carub.0005s0587 Capsella rubella HOM05D001715 ORTHO05D004824 3.6e-109 398.7 271 72.7
Sp2g16670 Schrenkiella parvula HOM05D001715 ORTHO05D004824 3.6e-109 398.7 269 72.9
A06p41160 Brassica napus HOM05D001715 ORTHO05D003849 6.2e-109 397.9 270 72.2
BolC7t44170H Brassica oleracea HOM05D001715 ORTHO05D004824 1.1e-108 397.1 271 72.3
Lju41A43T27 Lonicera japonica HOM05D001715 ORTHO05D004824 1.1e-108 397.1 283 71.0
C07p36500 Brassica napus HOM05D001715 ORTHO05D003849 1.4e-108 396.7 270 72.2
Gohir.D04G058700 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.4e-108 396.7 270 73.7
MD17G1021900 Malus domestica HOM05D001715 ORTHO05D004824 1.8e-108 396.4 272 75.0
Gohir.A05G354400 Gossypium hirsutum HOM05D001715 ORTHO05D004824 9.0e-108 394.0 270 73.3
Duzib187G0323 Durio zibethinus HOM05D001715 ORTHO05D004824 1.2e-107 393.7 270 72.6
Hma1.2p1_1747F.1_g300590 Hydrangea macrophylla HOM05D001715 ORTHO05D004824 2.0e-107 392.9 269 73.2
GSVIVG01032368001 Vitis vinifera HOM05D001715 ORTHO05D004824 2.0e-107 392.9 282 71.3
QL05p032480 Quercus lobata HOM05D001715 ORTHO05D004824 7.6e-107 391.0 305 66.6
QL05p033603 Quercus lobata HOM05D001715 ORTHO05D004824 7.6e-107 391.0 305 66.6
Gohir.A07G224000 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.3e-106 390.2 270 71.1
Haze_14762 Corylus avellana HOM05D001715 ORTHO05D004824 2.9e-106 389.0 329 62.3
Gohir.D07G231300 Gossypium hirsutum HOM05D001715 ORTHO05D004824 4.9e-106 388.3 270 70.7
Gorai.001G266400 Gossypium raimondii HOM05D001715 ORTHO05D004824 4.9e-106 388.3 270 70.7
PGR142G0496 Punica granatum HOM05D001715 ORTHO05D004824 4.9e-106 388.3 270 72.2
Solyc02g093490.3 Solanum lycopersicum HOM05D001715 ORTHO05D004824 4.9e-106 388.3 270 72.2
PSO063G0233 Papaver somniferum HOM05D001715 ORTHO05D004824 1.4e-105 386.7 272 72.1
PSO754G0079 Papaver somniferum HOM05D001715 ORTHO05D004824 1.4e-105 386.7 272 72.1
PGSC0003DMG400012610 Solanum tuberosum HOM05D001715 ORTHO05D004824 1.9e-105 386.3 270 71.9
MSTRG.24047 Avicennia marina HOM05D001715 ORTHO05D004824 3.2e-105 385.6 270 71.1
Thhalv10004728m.g Eutrema salsugineum HOM05D001715 ORTHO05D004824 3.2e-105 385.6 284 68.3
THA.LOC104823958 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 9.3e-105 384.0 271 69.7
Eucgr.J02260 Eucalyptus grandis HOM05D001715 ORTHO05D004824 2.7e-104 382.5 271 69.4
Sopen02g038180 Solanum pennellii HOM05D001715 ORTHO05D004824 4.6e-104 381.7 270 71.9
unitig_748.g6979 Utricularia gibba HOM05D001715 ORTHO05D004824 4.6e-104 381.7 253 74.7
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 6.0e-104 381.3 279 71.0
Migut.H00070 Erythranthe guttata HOM05D001715 ORTHO05D004824 1.3e-103 380.2 272 70.2
TAR622G0120 Trochodendron aralioides HOM05D001715 ORTHO05D004824 2.3e-103 379.4 265 72.1
Peaxi162Scf00420g00131 Petunia axillaris HOM05D001715 ORTHO05D004824 3.0e-103 379.0 295 65.8
TAR374G1502 Trochodendron aralioides HOM05D001715 ORTHO05D004824 8.7e-103 377.5 272 70.6
Ah.02g128230 Amaranthus hybridus HOM05D001715 ORTHO05D004824 1.1e-102 377.1 271 70.1
HanXRQChr15g0486831 Helianthus annuus HOM05D001715 ORTHO05D004824 1.5e-102 376.7 270 70.0
Lj7A601T103 Lonicera japonica HOM05D001715 ORTHO05D004824 2.5e-102 375.9 292 64.4
Dinv25723 Davidia involucrata HOM05D001715 ORTHO05D004510 4.3e-102 375.2 256 73.8
Manes.15G152100 Manihot esculenta HOM05D001715 ORTHO05D004824 1.6e-101 373.2 236 78.4
Aqoxy5G03737 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 3.7e-101 372.1 273 68.5
SHI03767 Sapria himalayana HOM05D001715 ORTHO05D004824 8.1e-101 370.9 270 70.0
MSTRG.3136 Avicennia marina HOM05D001715 ORTHO05D004824 4.0e-100 368.6 270 68.5
Hund15533 Selenicereus undatus HOM05D001715 ORTHO05D004824 5.3e-100 368.2 273 70.3
vmacro07988 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 6.9e-100 367.9 286 67.1
ClCG10G013770 Citrullus lanatus HOM05D001715 ORTHO05D004824 1.3e-98 363.6 272 69.9
Rhsim10G0014300 Rhododendron simsii HOM05D001715 ORTHO05D004824 1.4e-97 360.1 278 68.0
C02p54210 Brassica napus HOM05D001715 ORTHO05D003849 2.5e-97 359.4 269 68.0
CsaV3_3G042890 Cucumis sativus L. HOM05D001715 ORTHO05D004824 1.2e-96 357.1 272 69.1
A02p35490 Brassica napus HOM05D001715 ORTHO05D003849 7.9e-96 354.4 269 66.2
Cpa.g.sc108.80 Carica papaya HOM05D001715 ORTHO05D004824 2.3e-95 352.8 230 74.3
CDE04G1703 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 5.1e-95 351.7 273 67.4
CDE07G0729 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 4.3e-94 348.6 273 67.0
HPP92_019596 Vanilla planifolia HOM05D001715 ORTHO05D004824 7.4e-94 347.8 272 66.2
MELO3C026589.2 Cucumis melo HOM05D001715 ORTHO05D004824 1.6e-93 346.7 272 68.4
arahy.Tifrunner.gnm1.ann1.3H0FM5 Arachis hypogaea HOM05D001715 ORTHO05D004824 2.8e-93 345.9 278 69.4
AT3G27460 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 3.4e-91 339.0 230 71.7
Gohir.A11G065900 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.0e-90 337.4 231 73.2
BolC2t11484H Brassica oleracea HOM05D001715 ORTHO05D004824 1.3e-90 337.0 272 63.6
BraA02t08550Z Brassica rapa HOM05D001715 ORTHO05D003849 1.7e-90 336.7 314 57.0
BcaB07g30155 Brassica carinata HOM05D001715 ORTHO05D004824 1.1e-89 334.0 275 64.0
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 1.2e-88 330.5 272 64.7
BraA06t27038Z Brassica rapa HOM05D001715 ORTHO05D004824 1.6e-88 330.1 232 70.7
AUR62033204 Chenopodium quinoa HOM05D001715 ORTHO05D004824 1.6e-88 330.1 331 55.3
Oeu035801.2 Olea europaea HOM05D001715 ORTHO05D004824 3.5e-88 328.9 234 69.7
CAN.G473.27 Capsicum annuum HOM05D001715 ORTHO05D004824 5.1e-87 325.1 226 72.1
Zm00001eb409000 Zea mays HOM05D001715 ORTHO05D004824 9.7e-86 320.9 267 62.9
ATR0824G003 Amborella trichopoda HOM05D001715 ORTHO05D004824 1.6e-85 320.1 278 64.4
Sc03g0007260 Simmondsia chinensis HOM05D001715 ORTHO05D004824 5.3e-84 315.1 230 68.3
MBI11_g21317_MAGBIO Magnolia biondii HOM05D001715 ORTHO05D004824 1.9e-81 306.6 355 51.8
BcaC03g17465 Brassica carinata HOM05D001715 ORTHO05D003849 2.5e-81 306.2 260 62.3
Sed0015141 Sechium edule HOM05D001715 ORTHO05D004824 7.9e-80 301.2 231 68.4
QL02p073949 Quercus lobata HOM05D001715 ORTHO05D004824 3.9e-79 298.9 337 51.0
Nitab4.5_0006683g0120 Nicotiana tabacum HOM05D001715 ORTHO05D004824 1.1e-78 297.4 270 60.4
FAN26G1929 Fragaria x ananassa HOM05D001715 ORTHO05D004824 1.3e-77 293.9 284 57.0
Os12g0290600 Oryza sativa ssp. japonica HOM05D001715 ORTHO05D004824 1.8e-76 290.0 267 57.3
Nn4g22578 Nelumbo nucifera HOM05D001715 ORTHO05D004824 6.9e-76 288.1 233 65.2
Medtr7g033170 Medicago truncatula HOM05D001715 ORTHO05D004824 1.4e-73 280.4 172 82.6
Peaxi162Scf00700g00435 Petunia axillaris HOM05D001715 ORTHO05D004824 6.1e-72 275.0 229 63.3
CSS0002803 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 3.7e-69 265.8 176 77.3
Duzib187G0149 Durio zibethinus HOM05D001715 ORTHO05D004824 1.8e-68 263.5 173 72.8
SEGI_05213 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 4.5e-67 258.8 258 55.4
SGA_v2.0_scaffold47G17520 Striga asiatica HOM05D001715 ORTHO05D004824 6.5e-66 255.0 228 61.8
Duzib264G0165 Durio zibethinus HOM05D001715 ORTHO05D004824 8.5e-66 254.6 181 72.4
SMO119G0416 Selaginella moellendorffii HOM05D001715 ORTHO05D004824 1.9e-65 253.4 275 50.2
AUR62041236 Chenopodium quinoa HOM05D001715 ORTHO05D004824 2.0e-62 243.4 201 63.7
Mapoly0074s0018 Marchantia polymorpha HOM05D001715 ORTHO05D004824 1.3e-61 240.7 263 53.6
Pp3c18_8800 Physcomitrium patens HOM05D001715 ORTHO05D004824 8.2e-61 238.0 260 50.4
Pp3c21_7830 Physcomitrium patens HOM05D001715 ORTHO05D004824 1.8e-60 236.9 260 49.2
Rhsim08G0048300 Rhododendron simsii HOM05D001715 ORTHO05D004824 3.1e-60 236.1 271 49.4
Gorai.001G266500 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.1e-57 227.6 175 65.1
PSO478G2184 Papaver somniferum HOM05D001715 ORTHO05D004824 2.5e-57 226.5 161 69.6
Nitab4.5_0001562g0140 Nicotiana tabacum HOM05D001715 ORTHO05D004824 2.7e-56 223.0 162 69.1
BolC2t11492H Brassica oleracea HOM05D001715 ORTHO05D004824 1.1e-52 211.1 160 65.6
ECA232G3480 Erigeron canadensis HOM05D001715 ORTHO05D004824 3.8e-50 202.6 131 74.0
EL10As9g23941 Beta vulgaris HOM05D001715 ORTHO05D004824 5.0e-50 202.2 170 64.7
Rhsim10G0017400 Rhododendron simsii HOM05D001715 ORTHO05D004824 6.5e-50 201.8 257 48.6
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 4.2e-49 199.1 212 54.2
C02p54270 Brassica napus HOM05D001715 ORTHO05D004824 7.2e-49 198.4 151 65.6
AagrBONN_evm.TU.Sc2ySwM_344.5345 Anthoceros agrestis HOM05D001715 ORTHO05D004824 5.7e-46 188.7 223 48.4
CBR_g1018 Chara braunii HOM05D001161 ORTHO05D000497 5.9e-43 178.7 151 64.2
Gohir.D07G231366 Gossypium hirsutum HOM05D001715 ORTHO05D004824 8.6e-42 174.9 125 68.0
vmacro18295 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.5e-41 174.1 201 50.7
SGA_v2.0_scaffold135G34914 Striga asiatica HOM05D001715 ORTHO05D004824 1.0e-39 167.9 133 64.7
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 4.0e-39 166.0 232 41.4
SEGI_27231 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 4.1e-36 156.0 139 59.0
SGA_v2.0_scaffold131G34424 Striga asiatica HOM05D001715 ORTHO05D004824 2.1e-32 143.7 271 38.7
vmacro18298 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 2.8e-32 143.3 182 44.5
vmacro18296 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.2e-30 137.9 163 48.5
Aqoxy3G03035 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 2.4e-28 130.2 150 53.3
CiPaw.15G158300 Carya illinoinensis HOM05D001715 ORTHO05D004824 9.2e-28 128.3 91 71.4
Oeu033726.1 Olea europaea HOM05D001715 ORTHO05D004824 1.3e-26 124.4 88 72.7
CiPaw.15G157800 Carya illinoinensis HOM05D001715 ORTHO05D004824 2.6e-22 110.2 71 73.2
Oeu021199.1 Olea europaea HOM05D001715 ORTHO05D004824 9.8e-22 108.2 74 68.9
Mapoly0009s0091 Marchantia polymorpha HOM05D001715 ORTHO05D004824 1.1e-17 94.7 283 31.4
Oeu043035.1 Olea europaea HOM05D001715 ORTHO05D004824 4.3e-17 92.8 74 62.2
vmacro18297 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.2e-16 91.3 68 67.6
CSS0027227 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 1.9e-09 67.4 138 37.0
CSS0016932 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 2.8e-08 63.5 42 71.4
HPP92_019650 Vanilla planifolia HOM05D001715 ORTHO05D004824 3.6e-08 63.2 126 36.5
SEGI_06119 Sequoiadendron giganteum HOM05D001715 ORTHO05D000497 1.8e-07 60.8 44 65.9
Medtr3g063430 Medicago truncatula HOM05D001715 ORTHO05D259122 5.2e-07 59.3 38 73.7
CSS0014250 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 1.5e-06 57.8 34 85.3


User provided reference genes

Program Settings