Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 6.7e-236 820.5 463 100.0
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 7.2e-206 720.7 471 84.9
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 1.0e-196 690.3 474 80.6
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 4.1e-185 651.7 473 77.2
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 3.0e-172 609.0 484 71.3
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 1.2e-171 607.1 483 71.4
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 5.9e-168 594.7 473 70.6
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 2.5e-158 562.8 468 68.4
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 9.2e-153 544.3 457 65.9
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 3.1e-148 529.3 452 67.7
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 1.5e-147 526.9 477 65.2
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 1.4e-145 520.4 448 67.9
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 1.9e-145 520.0 496 59.9
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 2.4e-145 519.6 497 63.0
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 3.2e-145 519.2 496 59.9
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 5.4e-145 518.5 465 64.7
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 7.1e-145 518.1 451 63.4
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 9.2e-145 517.7 512 61.3
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 1.1e-142 510.8 457 63.0
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 2.5e-142 509.6 501 59.1
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 5.6e-142 508.4 479 61.8
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.2e-141 507.3 482 60.4
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 1.2e-141 507.3 488 61.5
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 2.1e-141 506.5 479 59.3
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 2.8e-141 506.1 480 59.4
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 4.7e-141 505.4 495 61.6
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 6.2e-141 505.0 484 60.3
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.1e-140 504.2 477 61.8
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 2.4e-140 503.1 480 59.2
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 2.4e-140 503.1 477 60.8
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 4.0e-140 502.3 481 60.5
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 4.0e-140 502.3 457 62.8
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 5.2e-140 501.9 473 60.5
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 5.2e-140 501.9 467 60.8
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 6.8e-140 501.5 477 61.6
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 6.8e-140 501.5 403 65.0
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 1.2e-139 500.7 478 61.1
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 1.5e-139 500.4 459 62.7
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 2.6e-139 499.6 499 58.1
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 5.8e-139 498.4 492 58.7
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 1.3e-138 497.3 473 64.9
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 1.3e-138 497.3 486 62.1
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 2.9e-138 496.1 490 57.6
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 3.8e-138 495.7 480 57.3
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 6.4e-138 495.0 405 69.4
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 1.4e-137 493.8 461 59.4
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 1.4e-137 493.8 457 60.8
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 3.2e-137 492.7 399 69.7
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 4.2e-137 492.3 477 59.1
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 5.4e-137 491.9 460 58.7
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 1.2e-136 490.7 455 61.5
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 7.8e-136 488.0 490 58.4
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 1.0e-135 487.6 476 59.7
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 1.3e-135 487.3 463 60.0
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 1.3e-135 487.3 488 57.6
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 1.7e-135 486.9 471 60.3
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 2.3e-135 486.5 484 58.7
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 3.9e-135 485.7 469 62.3
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 1.1e-134 484.2 486 59.3
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 1.5e-134 483.8 480 61.0
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 5.6e-134 481.9 453 59.4
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 7.3e-134 481.5 466 59.4
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 7.3e-134 481.5 450 60.9
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 8.1e-133 478.0 490 56.1
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 1.1e-132 477.6 487 58.5
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.4e-132 477.2 490 57.6
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 1.4e-132 477.2 495 56.0
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 4.0e-132 475.7 418 63.4
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 5.3e-132 475.3 437 59.5
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 3.4e-131 472.6 485 59.6
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 3.4e-131 472.6 485 55.9
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 3.8e-130 469.2 426 63.6
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 4.9e-130 468.8 486 56.6
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 4.9e-130 468.8 481 56.5
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 6.4e-130 468.4 479 58.7
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 1.1e-129 467.6 487 56.3
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 3.2e-129 466.1 482 57.5
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 7.1e-129 464.9 495 56.0
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 7.1e-129 464.9 496 58.7
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 1.2e-128 464.2 495 55.4
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.6e-128 463.8 477 56.6
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 4.6e-128 462.2 497 54.9
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 2.3e-127 459.9 482 57.9
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 3.9e-127 459.1 492 55.5
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 8.7e-127 458.0 399 63.9
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 1.9e-126 456.8 490 55.9
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 1.9e-126 456.8 487 57.9
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 3.3e-126 456.1 471 56.3
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 7.4e-126 454.9 485 57.9
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 9.6e-126 454.5 428 58.2
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 9.6e-126 454.5 483 55.1
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 1.3e-125 454.1 495 54.7
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 3.6e-125 452.6 492 54.5
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 4.8e-125 452.2 490 55.7
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 1.4e-124 450.7 473 55.2
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 1.8e-124 450.3 474 55.7
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 2.4e-124 449.9 495 54.3
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 3.1e-124 449.5 473 55.0
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 4.0e-124 449.1 462 56.3
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.2e-123 447.6 392 62.8
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 2.0e-123 446.8 489 57.3
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 2.0e-123 446.8 463 54.9
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 2.0e-123 446.8 485 56.7
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 2.6e-123 446.4 447 57.7
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 5.8e-123 445.3 480 54.0
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 9.9e-123 444.5 442 57.7
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 9.9e-123 444.5 467 55.7
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 1.7e-122 443.7 483 54.0
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 3.8e-122 442.6 486 53.3
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 3.8e-122 442.6 485 53.6
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 6.4e-122 441.8 489 54.0
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 1.1e-121 441.0 488 54.1
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 1.4e-121 440.7 485 54.0
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 2.4e-121 439.9 454 56.2
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 2.4e-121 439.9 480 54.4
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 4.2e-121 439.1 475 57.9
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 5.5e-121 438.7 486 53.1
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 4.6e-120 435.6 477 53.5
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 1.3e-119 434.1 479 55.9
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 6.7e-119 431.8 442 56.1
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 1.1e-118 431.0 453 54.3
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 1.9e-118 430.3 395 58.2
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 2.5e-118 429.9 457 53.4
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 5.6e-118 428.7 457 53.2
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 5.6e-118 428.7 457 54.0
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.6e-117 427.2 324 69.8
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.4e-116 424.1 416 55.8
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 9.0e-116 421.4 455 52.7
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 1.2e-115 421.0 461 54.2
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 2.6e-115 419.9 474 56.3
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 2.6e-115 419.9 456 52.9
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 3.4e-115 419.5 446 54.9
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 3.8e-114 416.0 475 55.8
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 1.1e-113 414.5 463 52.3
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 4.2e-113 412.5 454 53.3
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 4.2e-113 412.5 474 55.7
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 1.3e-111 407.5 487 50.5
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 6.7e-111 405.2 447 53.9
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 8.7e-111 404.8 387 58.1
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 1.1e-110 404.4 473 50.7
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 3.1e-108 396.4 470 49.8
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 5.5e-105 385.6 470 50.2
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 4.3e-102 375.9 294 63.9
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 2.4e-100 370.2 393 56.2
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 1.0e-98 364.8 439 48.5
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 3.9e-95 352.8 410 49.3
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 1.1e-94 351.3 380 50.3
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 2.9e-90 336.7 471 48.4
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 2.8e-85 320.1 391 45.3
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 2.0e-83 313.9 446 46.9
SEGI_11230 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 3.8e-74 283.1 285 53.7
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 1.0e-63 248.4 199 70.4
AagrBONN_evm.TU.Sc2ySwM_362.431 Anthoceros agrestis HOM05D003925 ORTHO05D004832 6.1e-56 222.6 332 42.2
CBR_g4722 Chara braunii HOM05D003925 ORTHO05D004832 1.1e-52 211.8 366 37.4
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 1.1e-49 201.8 199 60.8
SHI34757 Sapria himalayana HOM05D003925 ORTHO05D004832 5.8e-46 189.5 211 48.3
SEGI_10393 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 3.9e-42 176.8 144 66.7
BcaC01g04842 Brassica carinata HOM05D003925 ORTHO05D004832 1.4e-39 168.3 302 38.1
CSS0013131 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 2.0e-38 164.5 135 70.4
CSS0019842 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 4.1e-36 156.8 129 70.5
CAN.G697.8 Capsicum annuum HOM05D003925 ORTHO05D004832 1.6e-35 154.8 123 58.5
Lj6g0024462 Lotus japonicus HOM05D003925 ORTHO05D004832 6.0e-35 152.9 329 38.9
Haze_10058 Corylus avellana HOM05D003925 ORTHO05D004832 1.0e-34 152.1 142 64.8
Lalb_Chr20g0123671 Lupinus albus HOM05D003925 ORTHO05D004832 8.6e-34 149.1 107 72.9
Cre02.g106300 Chlamydomonas reinhardtii HOM05D003925 ORTHO05D004832 2.5e-33 147.5 340 34.7
Migut.B00784 Erythranthe guttata HOM05D003925 ORTHO05D004832 1.6e-32 144.8 126 65.9
CARHR216310 Cardamine hirsuta HOM05D003925 ORTHO05D004832 3.8e-21 107.1 107 53.3
MCO13G620 Micromonas commoda HOM05D003925 ORTHO05D004832 3.5e-19 100.5 341 28.4
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 3.6e-16 90.5 151 41.1
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 3.6e-16 90.5 151 41.1
CAN.G386.33 Capsicum annuum HOM05D003925 ORTHO05D004832 3.8e-13 80.5 78 44.9
AL3G33580 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 1.3e-08 65.5 305 26.9
BolC8t48574H Brassica oleracea HOM05D003925 ORTHO05D004832 2.1e-08 64.7 107 46.7
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 1.1e-07 62.4 55 54.5


User provided reference genes

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