Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 0.0e+00 1811.2 942 100.0
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 0.0e+00 1673.3 942 93.5
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 0.0e+00 1629.0 930 91.0
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 0.0e+00 1604.0 942 89.6
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 0.0e+00 1314.3 939 74.3
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 0.0e+00 1284.6 942 73.0
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 0.0e+00 1260.7 951 70.5
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 0.0e+00 1249.2 961 71.4
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 0.0e+00 1237.2 945 71.9
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 0.0e+00 1211.4 967 70.5
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 0.0e+00 1200.3 951 70.6
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 0.0e+00 1186.4 942 70.0
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 0.0e+00 1135.2 944 66.9
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 0.0e+00 1126.3 959 64.7
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 0.0e+00 1102.4 952 64.7
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 6.4e-312 1073.9 967 61.8
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 2.7e-308 1062.0 989 61.1
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 6.0e-308 1060.8 981 60.3
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 1.4e-304 1049.7 958 61.8
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 4.4e-303 1044.6 975 60.4
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 1.3e-302 1043.1 966 60.2
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 5.1e-299 1031.2 954 61.2
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 5.2e-296 1021.1 987 59.8
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 1.9e-293 1012.7 963 59.7
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 4.1e-293 1011.5 961 60.2
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 1.6e-292 1009.6 865 64.5
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 6.0e-292 1007.7 958 59.5
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 1.1e-290 1003.4 968 58.8
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 9.6e-290 1000.3 966 58.2
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 1.2e-289 1000.0 961 59.0
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 2.1e-289 999.2 962 57.9
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 1.2e-287 993.4 962 59.1
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 1.6e-284 983.0 969 58.0
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 4.3e-282 974.9 958 58.5
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 1.6e-281 973.0 962 57.8
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 1.8e-280 969.5 962 57.6
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 1.8e-280 969.5 1038 55.7
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 4.0e-280 968.4 963 57.3
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 2.6e-279 965.7 1014 56.3
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 3.8e-278 961.8 1014 56.5
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 2.4e-277 959.1 1013 56.4
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 6.0e-276 954.5 1014 55.9
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 3.0e-275 952.2 962 56.0
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 5.6e-274 948.0 1037 55.1
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 9.6e-274 947.2 948 57.9
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 5.1e-267 924.9 964 56.2
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 2.5e-266 922.5 953 56.7
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 5.6e-266 921.4 965 55.1
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 1.0e-262 910.6 859 60.3
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 9.3e-261 904.0 921 56.4
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 4.6e-260 901.7 774 62.8
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 6.5e-254 881.3 983 53.1
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 3.2e-253 879.0 1001 51.9
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 2.3e-251 872.8 856 58.2
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 4.8e-249 865.1 969 53.4
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 1.1e-248 864.0 859 58.3
arahy.Tifrunner.gnm1.ann1.L6Y1E3 Arachis hypogaea HOM05D003625 ORTHO05D004382 1.2e-244 850.5 592 75.3
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 8.8e-243 844.3 904 55.1
arahy.Tifrunner.gnm1.ann1.TJRY6P Arachis hypogaea HOM05D003625 ORTHO05D004382 1.2e-239 833.9 623 71.3
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 7.9e-236 821.2 589 73.9
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 2.0e-234 816.6 1091 49.1
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.7e-233 813.5 972 52.1
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 4.1e-224 782.3 1014 48.2
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 1.0e-222 777.7 983 48.8
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 3.8e-222 775.8 969 49.0
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 5.2e-219 765.4 837 53.8
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 1.3e-217 760.8 962 48.3
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 1.7e-217 760.4 999 47.7
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 5.4e-216 755.4 966 48.3
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 2.0e-215 753.4 967 47.9
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 5.9e-215 751.9 968 48.0
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 2.2e-214 750.0 945 50.1
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 3.2e-213 746.1 772 56.6
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 9.8e-210 734.6 934 48.6
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 1.3e-209 734.2 806 55.0
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 8.3e-209 731.5 967 47.7
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 7.0e-208 728.4 952 47.5
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 1.7e-206 723.8 975 45.3
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 1.2e-202 711.1 1033 46.2
Psat5g051000 Pisum sativum HOM05D003625 ORTHO05D004382 1.7e-198 697.2 487 75.4
Haze_24021 Corylus avellana HOM05D003625 ORTHO05D004382 4.7e-196 689.1 563 68.2
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 8.0e-196 688.3 1048 42.7
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 2.3e-195 686.8 1004 43.7
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 4.4e-194 682.6 1009 43.4
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 3.5e-191 672.9 943 45.9
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 1.3e-190 671.0 976 43.8
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 8.9e-187 658.3 1001 43.1
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 5.8e-186 655.6 919 45.7
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 1.1e-184 651.4 963 44.5
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 2.3e-182 643.7 991 42.2
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 5.6e-181 639.0 950 43.9
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 1.4e-176 624.4 967 43.2
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 2.4e-176 623.6 947 43.5
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 7.8e-175 618.6 936 43.7
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 1.3e-174 617.8 940 43.1
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 5.6e-173 612.5 931 42.4
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 9.6e-173 611.7 947 42.7
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 6.2e-172 609.0 943 43.7
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 6.2e-172 609.0 939 42.9
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 3.1e-171 606.7 939 42.8
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 3.1e-171 606.7 947 42.3
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 3.1e-171 606.7 939 42.8
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 5.2e-171 605.9 942 42.3
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 6.9e-171 605.5 970 42.1
ClCG03G001700 Citrullus lanatus HOM05D003625 ORTHO05D004382 9.9e-170 601.7 591 57.9
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 2.2e-169 600.5 956 43.0
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 8.4e-169 598.6 950 42.5
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 4.2e-168 596.3 949 43.1
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 5.4e-168 595.9 947 42.7
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 6.0e-167 592.4 978 41.4
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 4.8e-156 556.2 842 44.1
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 4.5e-146 523.1 935 38.1
AUR62034599 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.6e-143 514.6 700 46.6
Atru.chr5.1298 Acer truncatum HOM05D003625 ORTHO05D004382 1.1e-136 491.9 522 53.1
TPR.G34306 Trifolium pratense HOM05D003625 ORTHO05D004382 5.7e-133 479.6 334 76.3
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 3.7e-132 476.9 1027 35.2
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 1.6e-127 461.5 383 65.5
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 2.3e-126 457.6 960 36.2
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 3.7e-124 450.3 781 39.2
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 4.5e-122 443.4 774 40.1
TPR.G40473 Trifolium pratense HOM05D003625 ORTHO05D004382 2.2e-121 441.0 261 85.4
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 3.9e-118 430.3 777 39.6
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 5.2e-118 429.9 784 37.9
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 6.7e-118 429.5 808 37.4
CARHR251520 Cardamine hirsuta HOM05D003625 ORTHO05D004382 2.8e-116 424.1 552 46.6
HPP92_011331 Vanilla planifolia HOM05D003625 ORTHO05D004382 5.3e-115 419.9 523 47.0
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 2.9e-113 414.1 441 56.5
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 8.8e-110 402.5 806 36.2
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 1.8e-107 394.8 985 32.7
arahy.Tifrunner.gnm1.ann1.AN8C0D Arachis hypogaea HOM05D003625 ORTHO05D004382 5.3e-107 393.3 366 61.7
arahy.Tifrunner.gnm1.ann1.DI3WFZ Arachis hypogaea HOM05D003625 ORTHO05D004382 9.1e-107 392.5 364 61.8
TPR.G34304 Trifolium pratense HOM05D003625 ORTHO05D004382 9.1e-107 392.5 407 56.5
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 1.7e-105 388.3 1007 32.1
BolC2t10009H Brassica oleracea HOM05D003625 ORTHO05D004382 4.4e-101 373.6 550 42.0
BcaB05g23686 Brassica carinata HOM05D003625 ORTHO05D004382 1.1e-96 359.0 735 36.6
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 5.4e-91 340.1 624 40.7
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.0e-91 339.7 1052 28.3
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 1.7e-89 335.1 1026 31.5
Prupe.8G267900 Prunus persica HOM05D003625 ORTHO05D004382 1.7e-84 318.5 344 54.4
Haze_24022 Corylus avellana HOM05D003625 ORTHO05D004382 3.9e-81 307.4 480 42.3
Sc17g0003670 Simmondsia chinensis HOM05D003625 ORTHO05D004382 3.3e-80 304.3 286 58.4
CSS0019256 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 6.6e-73 280.0 268 58.2
SEGI_20946 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 2.3e-70 271.6 681 33.2
Ca_31206_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 6.8e-70 270.0 213 71.8
Sc17g0003660 Simmondsia chinensis HOM05D003625 ORTHO05D004382 6.0e-66 256.9 236 57.6
HanXRQChr12g0370811 Helianthus annuus HOM05D003625 ORTHO05D004382 6.0e-50 203.8 377 38.2
Sc17g0003680 Simmondsia chinensis HOM05D003625 ORTHO05D004382 6.0e-50 203.8 341 40.8
CSS0041154 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 3.9e-49 201.1 269 50.9
AUR62034492 Chenopodium quinoa HOM05D003625 ORTHO05D004382 4.3e-48 197.6 186 57.5
CARHR251510 Cardamine hirsuta HOM05D003625 ORTHO05D004382 7.1e-43 180.3 332 41.3
Hma1.2p1_0358F.1_g134790 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.6e-42 179.1 229 48.9
QL12p023546 Quercus lobata HOM05D003625 ORTHO05D004382 3.0e-41 174.9 568 30.5
Lalb_Chr24g0394281 Lupinus albus HOM05D003625 ORTHO05D004382 2.6e-37 161.8 168 54.8
SEGI_15323 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 3.4e-37 161.4 184 50.5
CSS0039297 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.4e-35 156.0 210 45.2
MELO3C022916.2 Cucumis melo HOM05D003625 ORTHO05D004382 1.9e-35 155.6 176 48.9
Hma1.2p1_0111F.1_g053430 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.7e-34 151.8 147 53.1
QL12p023490 Quercus lobata HOM05D003625 ORTHO05D004382 3.9e-33 147.9 218 46.3
QL01p033556 Quercus lobata HOM05D003625 ORTHO05D004382 1.9e-32 145.6 114 71.1
TPR.G8723 Trifolium pratense HOM05D000036 ORTHO05D012241 1.1e-30 139.8 81 87.7
QL05p076995 Quercus lobata HOM05D003625 ORTHO05D004382 4.5e-29 134.4 101 72.3
HanXRQChr12g0370771 Helianthus annuus HOM05D003625 ORTHO05D004382 1.7e-28 132.5 190 43.2
TPR.G163 Trifolium pratense HOM05D003625 ORTHO05D004382 8.4e-28 130.2 145 54.5
AUR62036671 Chenopodium quinoa HOM05D003625 ORTHO05D004382 3.0e-25 121.7 328 34.8
QL05p076992 Quercus lobata HOM05D003625 ORTHO05D004382 6.3e-23 114.0 92 68.5
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 1.5e-21 109.4 126 50.0
Hma1.2p1_0358F.1_g134800 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.0e-21 109.0 145 42.1
CDE11G0573 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 5.5e-19 100.9 191 35.1
CBR_g32446 Chara braunii HOM05D000019 ORTHO05D000353 4.6e-18 97.8 138 40.6
HPP92_011330 Vanilla planifolia HOM05D003625 ORTHO05D004382 3.3e-16 91.7 218 35.8
SEGI_02434 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 1.3e-15 89.7 72 61.1
CBR_g32447 Chara braunii HOM05D003625 ORTHO05D004382 2.8e-15 88.6 154 37.0
Hma1.2p1_3245F.1_g334350 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 3.7e-15 88.2 117 48.7
Os05g0188600 Oryza sativa ssp. japonica HOM05D003625 ORTHO05D004382 6.9e-14 84.0 95 44.2
BolC9t54863H Brassica oleracea HOM05D000096 ORTHO05D000045 1.2e-10 73.2 97 40.2
Zm00001eb115510 Zea mays HOM05D003625 ORTHO05D004382 1.6e-10 72.8 177 35.0
Zm00001eb115530 Zea mays HOM05D003625 ORTHO05D037860 4.7e-10 71.2 127 38.6
Zm00001eb115560 Zea mays HOM05D003625 ORTHO05D037860 1.8e-09 69.3 126 38.1
HanXRQChr01g0002901 Helianthus annuus HOM05D003625 ORTHO05D004382 8.8e-09 67.0 101 41.6
arahy.Tifrunner.gnm1.ann1.385P84 Arachis hypogaea HOM05D000055 ORTHO05D001675 3.7e-07 61.6 44 75.0
arahy.Tifrunner.gnm1.ann1.0NG2AS Arachis hypogaea HOM05D003117 ORTHO05D001675 4.1e-06 58.2 49 63.3
HanXRQChr02g0048981 Helianthus annuus HOM05D003625 ORTHO05D004382 5.3e-06 57.8 103 36.9


User provided reference genes

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