Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G018300 Glycine max HOM05D003995 ORTHO05D004800 3.9e-131 471.5 239 100.0
Glyma.13G355800 Glycine max HOM05D003995 ORTHO05D004800 1.9e-117 426.0 240 90.8
VMungo1080G0563 Vigna mungo HOM05D003995 ORTHO05D004800 7.5e-90 334.3 236 75.8
Glyma.07G017700 Glycine max HOM05D003995 ORTHO05D004800 1.7e-81 306.6 252 66.7
Phvul.005G170500 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 4.5e-79 298.5 244 68.0
Lj3g0012728 Lotus japonicus HOM05D003995 ORTHO05D004800 7.8e-79 297.7 255 64.3
Ca_11524_v3 Cicer arietinum L. HOM05D003995 ORTHO05D004800 5.6e-77 291.6 256 65.2
Psat4g198440 Pisum sativum HOM05D003995 ORTHO05D004800 5.2e-75 285.0 254 64.6
VMungo0331G0049 Vigna mungo HOM05D003995 ORTHO05D004800 3.7e-73 278.9 254 62.6
Lalb_Chr01g0013091 Lupinus albus HOM05D003995 ORTHO05D004800 2.4e-72 276.2 242 65.3
Phvul.010G147000 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 2.4e-72 276.2 253 61.3
Medtr8g013720 Medicago truncatula HOM05D003995 ORTHO05D004800 9.2e-72 274.2 256 61.7
TPR.G14825 Trifolium pratense HOM05D003995 ORTHO05D004800 3.5e-71 272.3 257 63.8
Lalb_Chr25g0280081 Lupinus albus HOM05D003995 ORTHO05D004800 1.7e-70 270.0 253 62.1
arahy.Tifrunner.gnm1.ann1.QE1TJP Arachis hypogaea HOM05D003995 ORTHO05D004800 1.9e-69 266.5 256 58.2
arahy.Tifrunner.gnm1.ann1.8U94IH Arachis hypogaea HOM05D003995 ORTHO05D004800 6.2e-68 261.5 255 58.4
QL05p021104 Quercus lobata HOM05D003995 ORTHO05D004800 9.5e-53 211.1 262 49.2
Thecc.06G096000 Theobroma cacao HOM05D003995 ORTHO05D004800 4.7e-52 208.8 264 47.0
Glyma.08G202900 Glycine max HOM05D003995 ORTHO05D004800 1.1e-51 207.6 252 50.4
Duzib235G0154 Durio zibethinus HOM05D003995 ORTHO05D004800 3.1e-51 206.1 261 44.8
FAN02G0974 Fragaria x ananassa HOM05D003995 ORTHO05D004800 4.0e-51 205.7 260 47.7
Sabra01G0153300 Salix brachista HOM05D003995 ORTHO05D004800 5.2e-51 205.3 262 46.2
FAN05G2434 Fragaria x ananassa HOM05D003995 ORTHO05D004800 8.9e-51 204.5 258 47.7
FAN14G0476 Fragaria x ananassa HOM05D003995 ORTHO05D004800 4.4e-50 202.2 260 47.7
Manes.04G131700 Manihot esculenta HOM05D003995 ORTHO05D004800 7.6e-50 201.4 260 44.2
Potri.001G187000 Populus trichocarpa HOM05D003995 ORTHO05D004800 1.3e-49 200.7 263 46.4
Gohir.A02G119100 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.7e-49 200.3 261 45.6
RcHm_v2.0_Chr2g0139601 Rosa chinensis HOM05D003995 ORTHO05D004800 2.2e-49 199.9 259 47.5
FvH4_6g32000 Fragaria vesca HOM05D003995 ORTHO05D004800 6.4e-49 198.4 260 47.3
FAN09G2208 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.9e-48 196.8 260 47.3
Gorai.009G136200 Gossypium raimondii HOM05D003995 ORTHO05D004800 2.4e-48 196.4 263 45.6
Gohir.A05G128000 Gossypium hirsutum HOM05D003995 ORTHO05D004800 3.2e-48 196.1 263 46.0
Actinidia21699 Actinidia chinensis HOM05D003995 ORTHO05D004800 4.1e-48 195.7 259 45.6
COL.COLO4_30474 Corchorus olitorius HOM05D003995 ORTHO05D004800 4.1e-48 195.7 261 45.6
Gohir.D03G059900 Gossypium hirsutum HOM05D003995 ORTHO05D004800 7.1e-48 194.9 261 45.6
Gohir.D05G132500 Gossypium hirsutum HOM05D003995 ORTHO05D004800 7.1e-48 194.9 263 45.6
Prupe.3G063200 Prunus persica HOM05D003995 ORTHO05D004800 1.6e-47 193.7 259 45.2
MD17G1187800 Malus domestica HOM05D003995 ORTHO05D004800 6.0e-47 191.8 259 46.3
CiPaw.02G147500 Carya illinoinensis HOM05D003995 ORTHO05D004800 1.0e-46 191.0 258 45.7
Manes.11G036200 Manihot esculenta HOM05D003995 ORTHO05D004800 1.0e-46 191.0 279 41.9
QL04p048641 Quercus lobata HOM05D003995 ORTHO05D004800 1.3e-46 190.7 247 47.8
CSS0042187 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 6.6e-46 188.3 262 45.8
CSS0043166 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 6.6e-46 188.3 263 45.6
Gorai.010G229800 Gossypium raimondii HOM05D003995 ORTHO05D004800 6.6e-46 188.3 259 43.6
Gohir.D06G197450 Gossypium hirsutum HOM05D003995 ORTHO05D004800 8.7e-46 188.0 259 43.6
Cfa002115 Carpinus fangiana HOM05D003995 ORTHO05D004800 3.3e-45 186.0 258 43.8
Cpa.g.sc109.33 Carica papaya HOM05D003995 ORTHO05D004800 1.2e-44 184.1 255 46.3
CiPaw.01G233700 Carya illinoinensis HOM05D003995 ORTHO05D004800 1.6e-44 183.7 249 45.4
Atru.chr1.3467 Acer truncatum HOM05D003995 ORTHO05D004800 4.7e-44 182.2 255 45.1
Aa31LG8G3420 Aethionema arabicum HOM05D003995 ORTHO05D004800 4.7e-44 182.2 259 45.6
Gorai.003G063800 Gossypium raimondii HOM05D003995 ORTHO05D004800 8.1e-44 181.4 253 43.9
MD09G1207100 Malus domestica HOM05D003995 ORTHO05D004800 3.1e-43 179.5 258 43.4
Ciclev10027380m.g Citrus clementina HOM05D003995 ORTHO05D004800 4.0e-43 179.1 260 43.5
Haze_16334 Corylus avellana HOM05D003995 ORTHO05D004800 4.0e-43 179.1 260 43.5
Hma1.2p1_1689F.1_g297670 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 4.0e-43 179.1 268 44.4
Hma1.2p1_0659F.1_g197350 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 2.0e-42 176.8 256 45.7
GSVIVG01017039001 Vitis vinifera HOM05D003995 ORTHO05D004800 5.8e-42 175.3 257 43.2
DCAR_019957 Daucus carota HOM05D003995 ORTHO05D004800 6.4e-41 171.8 256 43.0
Sc12g0009570 Simmondsia chinensis HOM05D003995 ORTHO05D004800 8.4e-41 171.4 261 42.5
TWI12G0239 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 1.1e-40 171.0 260 43.5
Carub.0003s1602 Capsella rubella HOM05D003995 ORTHO05D004800 1.4e-40 170.6 255 42.7
THA.LOC104817968 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 4.2e-40 169.1 254 42.5
TWI75G1811 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 5.4e-40 168.7 254 44.5
AT3G16270 Arabidopsis thaliana HOM05D003995 ORTHO05D004800 7.1e-40 168.3 259 42.1
AL3G29010 Arabidopsis lyrata HOM05D003995 ORTHO05D004800 2.1e-39 166.8 252 42.1
A05p33250 Brassica napus HOM05D003995 ORTHO05D004800 2.7e-39 166.4 255 41.2
CARHR091480 Cardamine hirsuta HOM05D003995 ORTHO05D004800 3.5e-39 166.0 256 41.8
Thhalv10020187m.g Eutrema salsugineum HOM05D003995 ORTHO05D004800 4.6e-39 165.6 253 39.9
EL10Ac9g22110 Beta vulgaris HOM05D003995 ORTHO05D004800 6.0e-39 165.2 258 43.0
THA.LOC104810534 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 7.8e-39 164.9 252 41.7
PGSC0003DMG400008535 Solanum tuberosum HOM05D003995 ORTHO05D004800 1.3e-38 164.1 261 41.8
Sp3g14640 Schrenkiella parvula HOM05D003995 ORTHO05D004800 1.7e-38 163.7 254 40.9
BcaC05g28900 Brassica carinata HOM05D003995 ORTHO05D004800 3.9e-38 162.5 255 41.2
BolC5t33775H Brassica oleracea HOM05D003995 ORTHO05D004800 3.9e-38 162.5 255 41.2
C05p50240 Brassica napus HOM05D003995 ORTHO05D004800 5.1e-38 162.2 254 42.1
Cc00_g10390 Coffea canephora HOM05D003995 ORTHO05D004800 5.1e-38 162.2 256 43.4
Hund06648 Selenicereus undatus HOM05D003995 ORTHO05D004800 5.1e-38 162.2 256 43.0
TWI18G0079 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 5.1e-38 162.2 259 42.5
BraA05t22150Z Brassica rapa HOM05D003995 ORTHO05D004800 6.6e-38 161.8 255 40.8
BcaB06g25717 Brassica carinata HOM05D003995 ORTHO05D004800 1.1e-37 161.0 254 41.7
Solyc04g047770.3 Solanum lycopersicum HOM05D003995 ORTHO05D004800 1.1e-37 161.0 261 41.4
Sopen04g017970 Solanum pennellii HOM05D003995 ORTHO05D004800 4.3e-37 159.1 261 41.0
PGR102G1422 Punica granatum HOM05D003995 ORTHO05D004800 1.6e-36 157.1 262 41.6
Eucgr.J02949 Eucalyptus grandis HOM05D003995 ORTHO05D004800 2.8e-36 156.4 261 40.2
Oeu017626.1 Olea europaea HOM05D003995 ORTHO05D004800 2.8e-36 156.4 250 42.0
Lj4A820G41 Lonicera japonica HOM05D003995 ORTHO05D004800 1.8e-35 153.7 248 42.3
Nitab4.5_0004354g0010 Nicotiana tabacum HOM05D003995 ORTHO05D004800 5.3e-35 152.1 265 40.8
CAN.G60.5 Capsicum annuum HOM05D003995 ORTHO05D004800 9.0e-35 151.4 260 40.8
Eucgr.F03056 Eucalyptus grandis HOM05D003995 ORTHO05D004800 1.2e-34 151.0 261 39.5
MSTRG.23509 Avicennia marina HOM05D003995 ORTHO05D004800 1.5e-34 150.6 253 37.5
PGR102G1287 Punica granatum HOM05D003995 ORTHO05D004800 2.6e-34 149.8 253 40.7
CANSAT56G4226 Cannabis sativa HOM05D003995 ORTHO05D004800 3.4e-34 149.4 259 39.0
Oeu050081.1 Olea europaea HOM05D003995 ORTHO05D004800 7.6e-34 148.3 251 41.4
Peaxi162Scf00090g00073 Petunia axillaris HOM05D003995 ORTHO05D004800 1.7e-33 147.1 264 39.8
MELO3C012986.2 Cucumis melo HOM05D003995 ORTHO05D004800 4.9e-33 145.6 264 37.5
TAR102G0002 Trochodendron aralioides HOM05D003995 ORTHO05D004800 8.4e-33 144.8 267 36.0
Nitab4.5_0002549g0020 Nicotiana tabacum HOM05D003995 ORTHO05D004800 1.9e-32 143.7 265 40.0
TAR624G1104 Trochodendron aralioides HOM05D003995 ORTHO05D004800 3.2e-32 142.9 267 40.4
PSO210G6397 Papaver somniferum HOM05D003995 ORTHO05D004800 4.2e-32 142.5 268 38.8
HanXRQChr14g0434431 Helianthus annuus HOM05D003995 ORTHO05D004800 7.1e-32 141.7 264 41.7
ClCG07G013220 Citrullus lanatus HOM05D003995 ORTHO05D004800 9.3e-32 141.4 263 38.0
CsaV3_3G023750 Cucumis sativus L. HOM05D003995 ORTHO05D004800 1.6e-31 140.6 265 37.0
Migut.H00960 Erythranthe guttata HOM05D003995 ORTHO05D004800 2.1e-31 140.2 236 37.3
PSO210G6330 Papaver somniferum HOM05D003995 ORTHO05D004800 2.7e-31 139.8 269 38.3
Aqoxy7G01498 Aquilegia oxysepala HOM05D003995 ORTHO05D004800 6.0e-31 138.7 251 37.8
Dinv30461 Davidia involucrata HOM05D003995 ORTHO05D004800 7.9e-31 138.3 259 39.8
Sed0003559 Sechium edule HOM05D003995 ORTHO05D004800 7.9e-31 138.3 251 38.6
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 1.8e-30 137.1 270 37.8
AUR62031875 Chenopodium quinoa HOM05D003995 ORTHO05D004800 3.9e-30 136.0 252 38.5
Actinidia32709 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.5e-29 133.3 233 39.9
Ah.01g005620 Amaranthus hybridus HOM05D003995 ORTHO05D004800 5.6e-29 132.1 267 36.7
vmacro18870 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 1.3e-28 131.0 260 37.7
Sed0011470 Sechium edule HOM05D003995 ORTHO05D004800 2.8e-28 129.8 265 37.0
HanXRQChr01g0017801 Helianthus annuus HOM05D003995 ORTHO05D004800 6.2e-28 128.6 246 39.0
Rhsim08G0225700 Rhododendron simsii HOM05D003995 ORTHO05D004800 1.4e-27 127.5 260 36.5
SGA_v2.0_scaffold44G16540 Striga asiatica HOM05D003995 ORTHO05D004800 9.0e-27 124.8 255 36.1
ECA248G2833 Erigeron canadensis HOM05D003995 ORTHO05D004800 1.3e-25 120.9 233 38.2
Nn2g11632 Nelumbo nucifera HOM05D003995 ORTHO05D004800 1.7e-25 120.6 252 32.9
CSS0032416 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 2.2e-25 120.2 258 36.0
SalBow1G2060 Salvia bowleyana HOM05D003995 ORTHO05D004800 5.5e-24 115.5 234 34.6
Dinv38000 Davidia involucrata HOM05D003995 ORTHO05D004800 2.7e-23 113.2 251 36.7
HPP92_008092 Vanilla planifolia HOM05D003995 ORTHO05D004800 7.9e-23 111.7 241 36.9
ATR0705G117 Amborella trichopoda HOM05D003995 ORTHO05D004800 2.3e-22 110.2 251 36.7
SHI11063 Sapria himalayana HOM05D003995 ORTHO05D004800 8.7e-22 108.2 222 34.7
AUR62022169 Chenopodium quinoa HOM05D003995 ORTHO05D004800 1.5e-21 107.5 250 34.0
Lsat_1_v5_gn_2_39201 Lactuca sativa HOM05D003995 ORTHO05D004800 1.9e-21 107.1 265 35.1
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 2.5e-21 106.7 250 37.6
Hund00665 Selenicereus undatus HOM05D003995 ORTHO05D004800 4.3e-21 105.9 254 33.1
MBI01_g24453_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 5.6e-21 105.5 216 34.3
Zm00001eb339300 Zea mays HOM05D003995 ORTHO05D004800 4.8e-20 102.4 257 33.9
CDE02G3541 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 6.2e-20 102.1 246 38.6
MBI01_g39826_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 2.2e-17 93.6 135 42.2
Os01g0232400 Oryza sativa ssp. japonica HOM05D003995 ORTHO05D004800 1.4e-16 90.9 251 37.5
CDE08G1118 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 1.9e-16 90.5 244 35.2
Zm00001eb119170 Zea mays HOM05D003995 ORTHO05D004800 1.2e-15 87.8 255 31.4
Actinidia39149 Actinidia chinensis HOM05D003995 ORTHO05D004800 8.7e-14 81.6 157 34.4
SEGI_23305 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 1.4e-11 74.3 263 28.1


User provided reference genes

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