Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 5.3e-290 1000.3 518 100.0
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 2.9e-224 781.9 524 80.7
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 1.4e-221 773.1 519 80.5
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 3.8e-216 755.0 527 77.4
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 7.0e-210 734.2 520 75.6
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 1.9e-199 699.5 519 73.0
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 2.8e-198 695.7 517 72.9
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 1.1e-197 693.7 524 72.5
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 6.9e-181 637.9 555 66.1
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 9.9e-180 634.0 564 65.4
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 3.3e-175 619.0 520 67.3
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 4.3e-167 592.0 518 64.5
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 2.9e-163 579.3 489 65.4
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 3.5e-161 572.4 514 63.6
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 1.3e-160 570.5 484 66.3
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 3.9e-160 568.9 529 61.2
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 7.4e-159 564.7 520 58.7
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 2.0e-156 556.6 515 61.0
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 4.5e-156 555.4 519 60.1
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 1.9e-154 550.1 521 59.5
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 6.7e-152 541.6 538 58.6
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 2.8e-150 536.2 522 58.4
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 4.1e-149 532.3 520 58.3
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 1.4e-146 523.9 523 58.3
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 3.2e-146 522.7 514 59.7
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 4.2e-146 522.3 425 70.8
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 1.3e-142 510.8 523 57.2
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 1.3e-142 510.8 523 56.4
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 4.8e-142 508.8 544 55.9
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 4.5e-140 502.3 458 60.0
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 5.9e-140 501.9 508 58.7
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 5.0e-139 498.8 525 58.5
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 7.9e-137 491.5 404 67.3
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 1.1e-135 487.6 507 58.0
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 1.1e-135 487.6 529 54.1
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 5.7e-135 485.3 519 57.6
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 7.4e-135 485.0 519 56.8
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.7e-134 483.8 458 59.0
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 1.7e-134 483.8 530 53.8
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 3.7e-134 482.6 527 52.6
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 1.2e-132 477.6 526 55.3
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 4.5e-132 475.7 536 53.4
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 3.8e-131 472.6 520 54.4
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 6.5e-131 471.9 565 50.6
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 1.9e-130 470.3 552 52.2
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 2.1e-129 466.8 339 74.9
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 4.7e-129 465.7 529 53.1
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 7.9e-129 464.9 494 55.7
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 7.9e-129 464.9 514 54.7
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 1.4e-128 464.2 513 53.0
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 1.4e-128 464.2 514 53.5
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 8.8e-128 461.5 514 53.9
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 1.5e-127 460.7 508 53.3
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 1.7e-126 457.2 576 49.8
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 3.7e-126 456.1 513 52.2
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 3.7e-126 456.1 522 52.1
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 1.4e-125 454.1 549 49.5
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 1.8e-125 453.8 515 52.0
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.3e-123 447.6 484 55.8
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 1.3e-123 447.6 520 52.3
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 5.0e-123 445.7 550 51.1
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 8.5e-123 444.9 521 52.2
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 7.2e-122 441.8 366 65.3
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 6.1e-121 438.7 569 48.5
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 1.0e-120 438.0 387 61.5
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 1.2e-119 434.5 507 50.9
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.2e-119 434.5 478 52.1
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 2.0e-119 433.7 399 57.1
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 2.0e-119 433.7 540 50.6
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 5.7e-119 432.2 542 48.2
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 6.3e-118 428.7 459 53.6
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 8.2e-118 428.3 539 48.1
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 2.2e-115 420.2 389 57.8
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 3.8e-115 419.5 499 51.7
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 1.1e-114 417.9 471 53.3
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 2.5e-114 416.8 360 63.1
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 1.8e-109 400.6 506 47.8
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 3.1e-109 399.8 504 48.4
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 7.0e-109 398.7 502 48.2
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 9.1e-109 398.3 345 62.6
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 7.7e-108 395.2 483 51.1
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 1.0e-107 394.8 382 55.8
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 2.9e-107 393.3 525 48.2
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 2.9e-107 393.3 440 51.1
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 1.5e-106 391.0 377 59.4
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 3.2e-106 389.8 367 59.7
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 5.4e-101 372.5 418 53.6
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 7.3e-98 362.1 443 50.8
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 2.8e-97 360.1 543 43.8
FAN05G1388 Fragaria x ananassa HOM05D001353 ORTHO05D005187 5.6e-90 335.9 392 55.1
FAN14G4842 Fragaria x ananassa HOM05D001353 ORTHO05D005187 2.0e-87 327.4 385 55.6
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 1.3e-86 324.7 425 47.8
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 4.9e-86 322.8 325 58.2
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 5.4e-85 319.3 219 75.3
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 1.4e-80 304.7 325 58.5
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 2.3e-80 303.9 188 78.7
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 2.0e-79 300.8 487 41.9
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 6.4e-78 295.8 305 54.4
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 7.1e-77 292.4 330 52.7
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 7.8e-76 288.9 446 39.7
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 3.9e-75 286.6 196 81.1
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.1e-74 285.0 314 52.5
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 1.1e-72 278.5 363 45.5
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.1e-66 258.5 295 51.5
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 1.6e-65 254.6 444 38.5
Sc10g0007280 Simmondsia chinensis HOM05D001353 ORTHO05D005187 1.1e-64 251.9 232 60.8
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 4.4e-63 246.5 285 49.5
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 2.9e-62 243.8 284 47.5
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 1.9e-61 241.1 185 66.5
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 1.6e-60 238.0 199 61.8
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 1.0e-59 235.3 285 46.0
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 1.9e-58 231.1 156 77.6
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 6.2e-57 226.1 276 49.6
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 1.1e-56 225.3 285 44.6
COL.COLO4_30465 Corchorus olitorius HOM05D000453 ORTHO05D000387 1.8e-56 224.6 302 46.7
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 3.1e-56 223.8 285 46.7
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 3.4e-55 220.3 146 74.7
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 1.4e-53 214.9 296 43.9
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 6.7e-51 206.1 169 62.1
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 1.9e-50 204.5 170 62.4
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 2.5e-50 204.1 296 41.9
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 4.3e-50 203.4 310 41.6
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 9.6e-50 202.2 296 41.9
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 1.3e-49 201.8 296 41.6
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 4.8e-49 199.9 169 61.5
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 2.9e-46 190.7 167 61.1
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 3.8e-46 190.3 287 39.7
unitig_22.g6212 Utricularia gibba HOM05D001353 ORTHO05D005187 8.4e-46 189.1 121 75.2
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 1.9e-42 177.9 183 53.0
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 1.8e-40 171.4 182 49.5
Gohir.A02G119400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.4e-37 161.8 186 46.8
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 3.9e-35 153.7 183 46.4
Pp3c16_10470 Physcomitrium patens HOM05D001353 ORTHO05D005187 6.3e-33 146.4 291 33.3
Atru.chr1.3457 Acer truncatum HOM05D001353 ORTHO05D005187 4.1e-32 143.7 98 76.5
CANSAT56G3175 Cannabis sativa HOM05D001353 ORTHO05D005187 2.0e-31 141.4 144 55.6
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 1.1e-29 135.6 196 40.8
Nitab4.5_0000568g0120 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.6e-28 131.7 117 63.2
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 1.0e-27 129.0 377 26.3
Nitab4.5_0000568g0100 Nicotiana tabacum HOM05D001353 ORTHO05D005187 6.9e-24 116.3 228 36.4
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 2.1e-20 104.8 94 54.3
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 6.1e-20 103.2 95 53.7
Medtr8g033020 Medicago truncatula HOM05D001353 ORTHO05D005187 6.1e-20 103.2 51 86.3
Medtr1g036590 Medicago truncatula HOM05D000351 ORTHO05D005187 7.9e-20 102.8 89 66.3
BcaC09g48593 Brassica carinata HOM05D001353 ORTHO05D005187 2.6e-18 97.8 90 52.2
BolC3t17095H Brassica oleracea HOM05D001353 ORTHO05D000017 3.3e-18 97.4 309 32.4
ATR0315G092 Amborella trichopoda HOM05D001353 ORTHO05D005187 2.8e-17 94.4 65 66.2
SEGI_15304 Sequoiadendron giganteum HOM05D001353 ORTHO05D005187 6.3e-17 93.2 66 60.6
QL05p021244 Quercus lobata HOM05D001353 ORTHO05D029171 1.1e-16 92.4 128 46.1
MCO06G129 Micromonas commoda HOM05D001353 ORTHO05D005187 3.1e-16 90.9 182 30.8
unitig_22.g6211 Utricularia gibba HOM05D001353 ORTHO05D005187 2.7e-12 77.8 189 33.3
FvH4_4g23310 Fragaria vesca HOM05D001353 ORTHO05D005187 3.3e-10 70.9 138 38.4
Cpa.g.c32037 Carica papaya HOM05D001353 ORTHO05D005187 1.3e-09 68.9 93 49.5
FAN12G2992 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.7e-09 68.6 137 38.0
FAN02G1855 Fragaria x ananassa HOM05D001353 ORTHO05D005187 4.5e-07 60.5 36 77.8
Psat1g156000 Pisum sativum HOM05D001353 ORTHO05D005187 1.0e-06 59.3 41 70.7
SHI11059 Sapria himalayana HOM05D001353 ORTHO05D005187 6.5e-06 56.6 34 73.5


User provided reference genes

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