Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G016700 Glycine max HOM05D003521 ORTHO05D000476 0.0e+00 1593.2 989 100.0
Glyma.13G356900 Glycine max HOM05D003521 ORTHO05D000476 0.0e+00 1476.1 990 94.1
Phvul.005G169100 Phaseolus vulgaris HOM05D003521 ORTHO05D000476 0.0e+00 1363.6 991 83.1
VMungo1080G0951 Vigna mungo HOM05D003521 ORTHO05D000476 0.0e+00 1320.8 991 79.2
Lj3g0009081 Lotus japonicus HOM05D003521 ORTHO05D000476 0.0e+00 1250.3 999 76.5
Lalb_Chr24g0395951 Lupinus albus HOM05D003521 ORTHO05D000476 0.0e+00 1250.0 988 74.9
Lalb_Chr14g0373191 Lupinus albus HOM05D003521 ORTHO05D000476 0.0e+00 1223.0 988 74.4
Psat5g297520 Pisum sativum HOM05D003521 ORTHO05D000476 0.0e+00 1191.0 1020 76.3
Medtr2g101700 Medicago truncatula HOM05D003521 ORTHO05D000476 0.0e+00 1188.3 993 74.6
Ca_01135_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 0.0e+00 1186.8 1008 73.9
arahy.Tifrunner.gnm1.ann1.ZR40ID Arachis hypogaea HOM05D003521 ORTHO05D000476 0.0e+00 1166.8 990 73.1
arahy.Tifrunner.gnm1.ann1.M6JGC2 Arachis hypogaea HOM05D003521 ORTHO05D000476 0.0e+00 1102.0 990 72.1
arahy.Tifrunner.gnm1.ann1.A5WQDM Arachis hypogaea HOM05D003521 ORTHO05D000476 6.1e-311 1070.8 1128 63.7
arahy.Tifrunner.gnm1.ann1.60NISA Arachis hypogaea HOM05D003521 ORTHO05D000476 5.0e-305 1051.2 1146 62.5
Lalb_Chr04g0262811 Lupinus albus HOM05D003521 ORTHO05D000476 1.5e-301 1039.6 1011 66.3
Atru.chr1.3345 Acer truncatum HOM05D003521 ORTHO05D000476 2.0e-298 1029.2 999 67.0
Duzib235G1126 Durio zibethinus HOM05D003521 ORTHO05D000476 7.7e-298 1027.3 995 66.8
CiPaw.01G235400 Carya illinoinensis HOM05D003521 ORTHO05D000476 1.3e-297 1026.5 990 66.7
RcHm_v2.0_Chr2g0139071 Rosa chinensis HOM05D003521 ORTHO05D000476 5.0e-297 1024.6 1041 65.6
Dinv30477 Davidia involucrata HOM05D003521 ORTHO05D000476 2.1e-295 1019.2 999 66.1
CSS0047293 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 5.1e-294 1014.6 986 64.0
FvH4_6g31822 Fragaria vesca HOM05D003521 ORTHO05D000476 2.6e-293 1012.3 1047 67.3
Duzib160G0549 Durio zibethinus HOM05D003521 ORTHO05D000476 1.1e-291 1006.9 994 64.3
QL05p021582 Quercus lobata HOM05D003521 ORTHO05D000476 1.2e-290 1003.4 995 67.1
CiPaw.02G148500 Carya illinoinensis HOM05D003521 ORTHO05D000476 1.3e-289 1000.0 1018 62.9
FAN14G2596 Fragaria x ananassa HOM05D003521 ORTHO05D000476 1.3e-289 1000.0 1029 66.5
Hma1.2p1_1195F.1_g265855 Hydrangea macrophylla HOM05D003521 ORTHO05D000476 1.3e-289 1000.0 990 63.8
FAN02G3342 Fragaria x ananassa HOM05D003521 ORTHO05D000476 2.9e-289 998.8 1043 65.9
CSS0015824 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 9.4e-288 993.8 990 65.1
Actinidia21685 Actinidia chinensis HOM05D003521 ORTHO05D000476 1.6e-287 993.0 1003 64.6
Ciclev10024803m.g Citrus clementina HOM05D003521 ORTHO05D000476 3.6e-287 991.9 995 64.6
Thecc.06G092900 Theobroma cacao HOM05D003521 ORTHO05D000476 2.3e-286 989.2 995 65.2
MD09G1208900 Malus domestica HOM05D003521 ORTHO05D000476 3.0e-286 988.8 994 65.9
Potri.003G052100 Populus trichocarpa HOM05D003521 ORTHO05D000476 3.0e-286 988.8 1018 62.4
FAN05G3380 Fragaria x ananassa HOM05D003521 ORTHO05D000476 5.2e-286 988.0 1041 66.2
TWI12G1038 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 7.4e-285 984.2 991 64.6
Gohir.A10G081600 Gossypium hirsutum HOM05D003521 ORTHO05D000476 4.5e-282 974.9 990 67.3
TWI18G0852 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 4.5e-282 974.9 995 65.7
Rhsim08G0223900 Rhododendron simsii HOM05D003521 ORTHO05D000476 2.9e-281 972.2 992 64.2
Prupe.3G066400 Prunus persica HOM05D003521 ORTHO05D000476 8.5e-281 970.7 994 62.5
MD17G1190500 Malus domestica HOM05D003521 ORTHO05D000476 1.9e-280 969.5 992 64.7
Haze_16353 Corylus avellana HOM05D003521 ORTHO05D000476 7.2e-280 967.6 1161 58.7
Eucgr.F03041 Eucalyptus grandis HOM05D003521 ORTHO05D000476 3.6e-279 965.3 1002 61.8
CANSAT56G3073 Cannabis sativa HOM05D003521 ORTHO05D000476 4.0e-278 961.8 1004 64.7
GSVIVG01038690001 Vitis vinifera HOM05D003521 ORTHO05D000476 8.8e-278 960.7 987 62.6
Gohir.D10G069800 Gossypium hirsutum HOM05D003521 ORTHO05D000476 1.7e-276 956.4 985 66.4
Gorai.009G135200 Gossypium raimondii HOM05D003521 ORTHO05D000476 2.8e-276 955.7 992 63.9
Gohir.D05G131500 Gossypium hirsutum HOM05D003521 ORTHO05D000476 3.1e-275 952.2 996 64.0
Gorai.011G074100 Gossypium raimondii HOM05D003521 ORTHO05D000476 9.1e-275 950.7 995 65.4
Sc18g0003130 Simmondsia chinensis HOM05D003521 ORTHO05D000476 7.7e-274 947.6 991 63.1
Potri.001G185050 Populus trichocarpa HOM05D003521 ORTHO05D000476 1.0e-273 947.2 1025 61.6
THA.LOC104812525 Tarenaya hassleriana HOM05D003521 ORTHO05D000476 3.2e-272 942.2 1003 61.2
Manes.11G037600 Manihot esculenta HOM05D003521 ORTHO05D000476 1.0e-270 937.2 997 63.1
vmacro18884 Vaccinium macrocarpon HOM05D003521 ORTHO05D000476 5.2e-270 934.9 1023 61.4
Thhalv10018077m.g Eutrema salsugineum HOM05D003521 ORTHO05D000476 1.2e-269 933.7 993 60.1
Gohir.A05G132400 Gossypium hirsutum HOM05D003521 ORTHO05D000476 1.2e-269 933.7 997 63.2
Carub.0002s2767 Capsella rubella HOM05D003521 ORTHO05D000476 2.6e-269 932.6 999 62.0
TAR626G0208 Trochodendron aralioides HOM05D003521 ORTHO05D000476 2.6e-269 932.6 991 61.0
Sabra03G0027000 Salix brachista HOM05D003521 ORTHO05D000476 1.3e-268 930.2 1068 59.5
Dinv38015 Davidia involucrata HOM05D003521 ORTHO05D000476 7.0e-267 924.5 736 76.1
Peaxi162Scf00207g01030 Petunia axillaris HOM05D003521 ORTHO05D000476 7.0e-267 924.5 1030 60.4
AT1G79830 Arabidopsis thaliana HOM05D003521 ORTHO05D000476 2.7e-266 922.5 987 60.4
AUR62011668 Chenopodium quinoa HOM05D003521 ORTHO05D000476 3.5e-266 922.2 997 59.4
AL2G41720 Arabidopsis lyrata HOM05D003521 ORTHO05D000476 1.0e-265 920.6 990 59.8
Sp5g35930 Schrenkiella parvula HOM05D003521 ORTHO05D000476 2.5e-264 916.0 983 59.8
Nitab4.5_0010600g0010 Nicotiana tabacum HOM05D003521 ORTHO05D000476 9.5e-264 914.1 1040 57.8
TAR383G0706 Trochodendron aralioides HOM05D003521 ORTHO05D000476 4.7e-263 911.8 989 60.5
C06p28740 Brassica napus HOM05D003521 ORTHO05D000476 5.2e-262 908.3 1003 58.9
AUR62016491 Chenopodium quinoa HOM05D003521 ORTHO05D000476 8.9e-262 907.5 993 61.1
Aqoxy7G01582 Aquilegia oxysepala HOM05D003521 ORTHO05D000476 7.5e-261 904.4 994 59.0
BolC6t38043H Brassica oleracea HOM05D003521 ORTHO05D000476 9.8e-261 904.0 1008 58.8
A07p26350 Brassica napus HOM05D003521 ORTHO05D000476 2.8e-260 902.5 993 60.1
BraA07t30279Z Brassica rapa HOM05D003521 ORTHO05D000476 6.3e-260 901.4 991 59.3
CARHR143590 Cardamine hirsuta HOM05D003521 ORTHO05D000476 6.3e-260 901.4 991 58.9
Cc04_g03000 Coffea canephora HOM05D003521 ORTHO05D000476 8.3e-260 901.0 1012 61.4
PGR102G1144 Punica granatum HOM05D003521 ORTHO05D000476 1.8e-259 899.8 999 60.6
Nitab4.5_0000351g0100 Nicotiana tabacum HOM05D003521 ORTHO05D000476 3.1e-259 899.0 1041 56.3
Nn2g11676 Nelumbo nucifera HOM05D003521 ORTHO05D000476 2.0e-258 896.3 1032 58.2
Sed0003107 Sechium edule HOM05D003521 ORTHO05D000476 2.0e-258 896.3 1023 60.5
Aa31LG4G110 Aethionema arabicum HOM05D003521 ORTHO05D000476 2.7e-258 896.0 1027 59.8
COL.COLO4_30440 Corchorus olitorius HOM05D003521 ORTHO05D000476 7.8e-258 894.4 993 61.3
Nn3g18099 Nelumbo nucifera HOM05D003521 ORTHO05D000476 1.0e-257 894.0 990 59.3
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 2.3e-257 892.9 1073 57.7
MELO3C023279.2 Cucumis melo HOM05D003521 ORTHO05D000476 2.9e-257 892.5 1019 58.4
SGA_v2.0_scaffold4G02009 Striga asiatica HOM05D003521 ORTHO05D000476 1.6e-255 886.7 1015 59.3
Migut.D01015 Erythranthe guttata HOM05D003521 ORTHO05D000476 8.3e-252 874.4 996 59.5
Hund00648 Selenicereus undatus HOM05D003521 ORTHO05D000476 4.1e-251 872.1 1025 58.2
ClCG02G000820 Citrullus lanatus HOM05D003521 ORTHO05D000476 2.7e-250 869.4 1023 56.5
Sed0014905 Sechium edule HOM05D003521 ORTHO05D000476 3.9e-249 865.5 1023 56.8
SalBow7G4780 Salvia bowleyana HOM05D003521 ORTHO05D000476 6.2e-247 858.2 1035 55.6
CsaV3_2G017940 Cucumis sativus L. HOM05D003521 ORTHO05D000476 5.2e-246 855.1 1020 56.7
Sabra01G0155200 Salix brachista HOM05D003521 ORTHO05D000476 9.8e-245 850.9 1025 57.1
Migut.I00939 Erythranthe guttata HOM05D003521 ORTHO05D000476 2.2e-244 849.7 1011 56.6
Sopen06g024880 Solanum pennellii HOM05D003521 ORTHO05D000476 1.9e-243 846.7 1026 55.8
HanXRQChr10g0313461 Helianthus annuus HOM05D003521 ORTHO05D000476 1.2e-242 844.0 995 56.7
CAN.G1152.8 Capsicum annuum HOM05D003521 ORTHO05D000476 1.3e-241 840.5 1039 55.0
Lsat_1_v5_gn_1_35300 Lactuca sativa HOM05D003521 ORTHO05D000476 1.3e-241 840.5 1006 58.1
EL10Ac9g22035 Beta vulgaris HOM05D003521 ORTHO05D000476 3.0e-241 839.3 971 57.7
HanXRQChr12g0360801 Helianthus annuus HOM05D003521 ORTHO05D000476 5.0e-241 838.6 995 63.0
PSO386G0042 Papaver somniferum HOM05D003521 ORTHO05D000476 1.6e-239 833.6 1009 57.2
ECA247G0039 Erigeron canadensis HOM05D003521 ORTHO05D000476 8.1e-239 831.2 1030 54.7
ECA234G0658 Erigeron canadensis HOM05D003521 ORTHO05D000476 5.8e-237 825.1 982 57.3
HanXRQChr04g0096181 Helianthus annuus HOM05D003521 ORTHO05D000476 9.9e-237 824.3 1012 55.2
Solyc06g066610.4 Solanum lycopersicum HOM05D003521 ORTHO05D000476 8.3e-236 821.2 1019 54.5
PSO210G6795 Papaver somniferum HOM05D003521 ORTHO05D000476 1.9e-235 820.1 1005 56.7
SGA_v2.0_scaffold68G22978 Striga asiatica HOM05D003521 ORTHO05D000476 1.6e-234 817.0 1024 54.3
MSTRG.22661 Avicennia marina HOM05D003521 ORTHO05D000476 3.9e-233 812.4 1003 57.0
DCAR_016209 Daucus carota HOM05D003521 ORTHO05D000476 3.3e-232 809.3 978 58.3
CDE02G1875 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 4.4e-229 798.9 995 56.0
Lsat_1_v5_gn_5_130960 Lactuca sativa HOM05D003521 ORTHO05D000476 8.4e-228 794.7 994 56.8
Hund06634 Selenicereus undatus HOM05D003521 ORTHO05D000476 1.4e-227 793.9 1033 53.1
Zm00001eb295600 Zea mays HOM05D003521 ORTHO05D000476 1.9e-219 766.9 1037 53.8
Actinidia24741 Actinidia chinensis HOM05D003521 ORTHO05D000476 2.7e-218 763.1 986 54.1
unitig_62.g23765 Utricularia gibba HOM05D003521 ORTHO05D000476 1.7e-217 760.4 996 51.9
ATR0315G089 Amborella trichopoda HOM05D003521 ORTHO05D000476 9.6e-216 754.6 1006 52.2
Lj5C57T13 Lonicera japonica HOM05D003521 ORTHO05D000476 1.1e-211 741.1 1019 53.6
Os05g0559900 Oryza sativa ssp. japonica HOM05D003521 ORTHO05D000476 2.1e-207 726.9 1042 53.3
ECA232G1585 Erigeron canadensis HOM05D003521 ORTHO05D000142 4.9e-196 689.1 997 51.8
SHI10997 Sapria himalayana HOM05D003521 ORTHO05D000476 1.9e-187 660.6 1096 45.5
Cpa.g.sc1513.1 Carica papaya HOM05D003521 ORTHO05D000476 7.7e-181 638.6 481 77.5
Mapoly0013s0180 Marchantia polymorpha HOM05D003521 ORTHO05D000476 1.1e-168 598.2 1020 43.3
HanXRQChr16g0500841 Helianthus annuus HOM05D003521 ORTHO05D000476 2.4e-166 590.5 897 51.2
Pp3c12_5050 Physcomitrium patens HOM05D003521 ORTHO05D000476 1.3e-156 558.1 1000 43.3
CDE08G0748 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 4.2e-155 553.1 787 51.0
AagrBONN_evm.TU.Sc2ySwM_344.1927 Anthoceros agrestis HOM05D003521 ORTHO05D000476 2.0e-149 534.3 616 58.0
HPP92_003835 Vanilla planifolia HOM05D003521 ORTHO05D000476 3.8e-148 530.0 551 60.4
Pp3c4_15860 Physcomitrium patens HOM05D003521 ORTHO05D000476 4.9e-135 486.5 759 47.2
Zm00001eb343520 Zea mays HOM05D003521 ORTHO05D000476 5.6e-115 419.9 392 64.8
CBR_g16051 Chara braunii HOM05D003521 ORTHO05D000476 7.3e-99 366.3 1009 33.9
unitig_46.g18558 Utricularia gibba HOM05D003521 ORTHO05D000476 8.5e-71 273.1 477 44.4
Ca_01143_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 4.8e-66 257.3 315 59.4
Oeu024073.1 Olea europaea HOM05D003521 ORTHO05D000476 1.7e-63 248.8 526 42.8
CAN.G395.28 Capsicum annuum HOM05D003521 ORTHO05D000476 7.0e-57 226.9 337 49.3
TPR.G5155 Trifolium pratense HOM05D003521 ORTHO05D000476 7.0e-57 226.9 137 94.9
Lsat_1_v5_gn_4_102620 Lactuca sativa HOM05D003521 ORTHO05D000476 5.7e-51 207.2 163 73.0
CDE08G0544 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 2.2e-47 195.3 194 59.3
Ca_25389_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 5.2e-44 184.1 233 54.9
Cre03.g187000 Chlamydomonas reinhardtii HOM05D003521 ORTHO05D000476 1.6e-40 172.6 324 40.4
PRCOL_00000677 Prasinoderma coloniale HOM05D003521 ORTHO05D000476 4.5e-40 171.0 624 30.6
SMO298G0028 Selaginella moellendorffii HOM05D003521 ORTHO05D000476 1.8e-36 159.1 359 36.5
Lsat_1_v5_gn_4_178240 Lactuca sativa HOM05D003521 ORTHO05D000476 7.5e-35 153.7 120 75.8
Cpa.g.c29821 Carica papaya HOM05D003521 ORTHO05D000476 1.1e-33 149.8 133 69.2
Medtr2g043010 Medicago truncatula HOM05D003521 ORTHO05D000476 7.7e-32 143.7 161 60.2
CAN.G135.35 Capsicum annuum HOM05D003521 ORTHO05D000476 3.8e-31 141.4 199 52.8
MELO3C034685.2 Cucumis melo HOM05D003521 ORTHO05D000476 2.1e-29 135.6 88 80.7
HanXRQChr16g0500831 Helianthus annuus HOM05D003521 ORTHO05D000476 1.5e-27 129.4 83 79.5
Zm00001eb343530 Zea mays HOM05D003521 ORTHO05D000476 3.4e-27 128.3 489 31.9
Cpa.g.c33209.1 Carica papaya HOM05D003521 ORTHO05D000476 7.5e-27 127.1 397 33.8
TPR.G19044 Trifolium pratense HOM05D003521 ORTHO05D000476 9.8e-27 126.7 79 88.6
SEGI_27505 Sequoiadendron giganteum HOM05D003521 ORTHO05D000476 1.8e-25 122.5 463 31.3
Lsat_1_v5_gn_4_102580 Lactuca sativa HOM05D003521 ORTHO05D000476 5.4e-25 120.9 453 31.6
Actinidia32725 Actinidia chinensis HOM05D003521 ORTHO05D000476 1.2e-24 119.8 107 65.4
arahy.Tifrunner.gnm1.ann1.J2PPD0 Arachis hypogaea HOM05D003521 ORTHO05D000476 2.7e-24 118.6 101 68.3
MCO14G500 Micromonas commoda HOM05D003521 ORTHO05D000476 3.5e-24 118.2 583 29.3
Dinv38016 Davidia involucrata HOM05D003521 ORTHO05D000476 1.3e-23 116.3 86 66.3
AagrBONN_evm.TU.Sc2ySwM_344.1934 Anthoceros agrestis HOM05D003521 ORTHO05D000476 1.7e-23 115.9 358 31.3
Ca_01133_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 3.9e-23 114.8 218 44.5
arahy.Tifrunner.gnm1.ann1.SA7FDN Arachis hypogaea HOM05D003521 ORTHO05D000476 8.6e-23 113.6 63 96.8
CBR_g37651 Chara braunii HOM05D003521 ORTHO05D000476 8.6e-23 113.6 654 25.7
CARHR143550 Cardamine hirsuta HOM05D003521 ORTHO05D000476 2.5e-22 112.1 259 40.2
Ca_31247_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 3.3e-22 111.7 76 82.9
HanXRQChr11g0325911 Helianthus annuus HOM05D003521 ORTHO05D000476 5.6e-22 110.9 84 73.8
Mapoly0111s0038 Marchantia polymorpha HOM05D003521 ORTHO05D000476 1.6e-21 109.4 645 25.0
Ca_16259_v3 Cicer arietinum L. HOM05D001034 ORTHO05D000476 6.2e-21 107.5 80 77.5
Oeu024072.1 Olea europaea HOM05D003521 ORTHO05D000476 9.8e-19 100.1 405 29.9
CARHR212390 Cardamine hirsuta HOM05D003521 ORTHO05D000476 1.3e-18 99.8 97 66.0
Ca_25015_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 1.9e-17 95.9 60 93.3
TPR.G7293 Trifolium pratense HOM05D003521 ORTHO05D000476 9.2e-17 93.6 175 45.1
Lsat_1_v5_gn_2_62580 Lactuca sativa HOM05D003521 ORTHO05D000476 2.3e-15 89.0 60 83.3
Lsat_1_v5_gn_4_102600 Lactuca sativa HOM05D003521 ORTHO05D000476 8.6e-15 87.0 74 71.6
PSO596G0006 Papaver somniferum HOM05D003521 ORTHO05D000476 4.7e-13 81.3 65 69.2
PSO596G0043 Papaver somniferum HOM05D003521 ORTHO05D000476 4.7e-13 81.3 65 69.2
unitig_52.g17085 Utricularia gibba HOM05D003521 ORTHO05D000476 4.0e-12 78.2 158 41.1
BolC1t05061H Brassica oleracea HOM05D003521 ORTHO05D000476 5.2e-12 77.8 89 58.4
HanXRQChr07g0187491 Helianthus annuus HOM05D003521 ORTHO05D000476 4.4e-11 74.7 79 59.5
AagrBONN_evm.TU.Sc2ySwM_344.1936 Anthoceros agrestis HOM05D003521 ORTHO05D000476 2.2e-10 72.4 160 38.1
HanXRQChr01g0011031 Helianthus annuus HOM05D003521 ORTHO05D000476 3.2e-09 68.6 45 82.2
C09p10740 Brassica napus HOM05D003521 ORTHO05D000476 4.6e-08 64.7 89 52.8
Thecc.08G046800 Theobroma cacao HOM05D003521 ORTHO05D000476 4.6e-08 64.7 73 60.3
Cfa026401 Carpinus fangiana HOM05D003521 ORTHO05D000476 3.9e-07 61.6 672 23.8
EL10Ac6g13433 Beta vulgaris HOM05D000200 ORTHO05D000262 9.5e-06 57.0 46 65.2


User provided reference genes

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