Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G212900 Glycine max HOM05D026408 ORTHO05D029776 2.3e-284 981.9 603 100.0
Phvul.008G238000 Phaseolus vulgaris HOM05D026408 ORTHO05D029776 7.7e-200 701.0 628 64.0
VMungo0647G0061 Vigna mungo HOM05D026408 ORTHO05D029776 1.5e-195 686.8 637 62.8
Glyma.02G243800 Glycine max HOM05D026408 ORTHO05D029776 3.8e-183 645.6 461 81.8
Medtr5g077800 Medicago truncatula HOM05D006010 ORTHO05D007381 8.9e-23 112.8 145 47.6
Ca_05839_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 2.2e-21 108.2 129 50.4
Phvul.004G098200 Phaseolus vulgaris HOM05D006010 ORTHO05D007381 2.2e-21 108.2 191 41.4
Glyma.16G168300 Glycine max HOM05D006010 ORTHO05D007381 3.7e-21 107.5 136 50.7
Lj4g0009716 Lotus japonicus HOM05D006010 ORTHO05D007381 1.1e-20 105.9 279 34.1
arahy.Tifrunner.gnm1.ann1.RW4QB8 Arachis hypogaea HOM05D006010 ORTHO05D007381 3.2e-20 104.4 280 35.7
Ca_05962_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 5.4e-20 103.6 294 33.7
Glyma.02G082600 Glycine max HOM05D006010 ORTHO05D007381 1.6e-19 102.1 136 50.0
arahy.Tifrunner.gnm1.ann1.14A9Q3 Arachis hypogaea HOM05D006010 ORTHO05D007381 2.1e-19 101.7 246 35.4
arahy.Tifrunner.gnm1.ann1.ZG5C6W Arachis hypogaea HOM05D006010 ORTHO05D007381 1.1e-17 95.9 285 34.0
Psat2g045640 Pisum sativum HOM05D006010 ORTHO05D007381 2.1e-16 91.7 145 42.1
Lalb_Chr10g0104261 Lupinus albus HOM05D006010 ORTHO05D007381 6.2e-16 90.1 262 31.3
VMungo0464G0699 Vigna mungo HOM05D006010 ORTHO05D007381 1.2e-14 85.9 155 41.3
vmacro20589 Vaccinium macrocarpon HOM05D006010 ORTHO05D007381 2.0e-14 85.1 178 36.5
Cpa.g.sc116.81 Carica papaya HOM05D006010 ORTHO05D007381 4.4e-14 84.0 137 38.7
Cc02_g11480 Coffea canephora HOM05D006010 ORTHO05D007381 9.9e-14 82.8 146 41.1
HanXRQChr15g0482991 Helianthus annuus HOM05D006010 ORTHO05D007381 9.9e-14 82.8 162 37.0
Prupe.2G048000 Prunus persica HOM05D006010 ORTHO05D007381 1.3e-13 82.4 174 37.4
Actinidia35721 Actinidia chinensis HOM05D006010 ORTHO05D007381 3.8e-13 80.9 146 39.7
CsaV3_2G017210 Cucumis sativus L. HOM05D006010 ORTHO05D007381 3.8e-13 80.9 134 40.3
Rhsim10G0180400 Rhododendron simsii HOM05D006010 ORTHO05D007381 3.8e-13 80.9 203 32.5
MELO3C020924.2 Cucumis melo HOM05D006010 ORTHO05D007381 4.9e-13 80.5 135 38.5
Migut.K00936 Erythranthe guttata HOM05D006010 ORTHO05D007381 8.4e-13 79.7 160 39.4
CSS0039891 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 1.4e-12 79.0 129 43.4
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 4.2e-12 77.4 174 36.8
MD02G1273300 Malus domestica HOM05D006010 ORTHO05D007381 1.2e-11 75.9 162 34.6
Sed0022983 Sechium edule HOM05D006010 ORTHO05D007381 1.6e-11 75.5 177 33.9
CiPaw.03G074500 Carya illinoinensis HOM05D006010 ORTHO05D007381 2.7e-11 74.7 146 36.3
QL12p000853 Quercus lobata HOM05D006010 ORTHO05D007381 2.7e-11 74.7 143 37.8
TWI53G0527 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 2.7e-11 74.7 282 28.4
Sed0003139 Sechium edule HOM05D006010 ORTHO05D007381 4.6e-11 73.9 169 34.9
Haze_14288 Corylus avellana HOM05D006010 ORTHO05D007381 7.8e-11 73.2 156 32.7
Lj2A517G41 Lonicera japonica HOM05D006010 ORTHO05D007381 7.8e-11 73.2 128 42.2
PGR004G1862 Punica granatum HOM05D006010 ORTHO05D007381 3.0e-10 71.2 137 38.7
SalBow1G7757 Salvia bowleyana HOM05D006010 ORTHO05D007381 3.0e-10 71.2 137 38.7
TPR.G23647 Trifolium pratense HOM05D006010 ORTHO05D007381 3.9e-10 70.9 268 29.1
GSVIVG01015997001 Vitis vinifera HOM05D006010 ORTHO05D007381 5.1e-10 70.5 237 31.6
Potri.017G135500 Populus trichocarpa HOM05D006010 ORTHO05D007381 6.6e-10 70.1 168 33.3
Cfa007784 Carpinus fangiana HOM05D006010 ORTHO05D007381 8.7e-10 69.7 156 31.4
ClCG05G010670 Citrullus lanatus HOM05D006010 ORTHO05D007381 1.9e-09 68.6 95 44.2
Actinidia28796 Actinidia chinensis HOM05D006010 ORTHO05D007381 2.5e-09 68.2 112 38.4
Hma1.2p1_0249F.1_g102390 Hydrangea macrophylla HOM05D006010 ORTHO05D007381 2.5e-09 68.2 179 34.6
Aa31LG5G13330 Aethionema arabicum HOM05D006010 ORTHO05D007381 4.3e-09 67.4 82 47.6
Eucgr.F02881 Eucalyptus grandis HOM05D006010 ORTHO05D007381 5.6e-09 67.0 168 34.5
C09p75990 Brassica napus HOM05D006010 ORTHO05D007381 1.3e-08 65.9 142 35.9
BolC5t35058H Brassica oleracea HOM05D006010 ORTHO05D007381 1.3e-08 65.9 142 35.9
Ciclev10026000m.g Citrus clementina HOM05D006010 ORTHO05D007381 3.6e-08 64.3 199 29.6
Sopen11g006280 Solanum pennellii HOM05D006010 ORTHO05D007381 3.6e-08 64.3 203 31.5
BcaC05g30500 Brassica carinata HOM05D000919 ORTHO05D004442 4.8e-08 63.9 86 45.3
CDE09G0547 Ceratophyllum demersum HOM05D006010 ORTHO05D007381 8.1e-08 63.2 84 41.7
COL.COLO4_31121 Corchorus olitorius HOM05D006010 ORTHO05D007381 8.1e-08 63.2 152 33.6
ECA236G4224 Erigeron canadensis HOM05D006010 ORTHO05D007381 8.1e-08 63.2 152 33.6
Carub.0003s0196 Capsella rubella HOM05D006010 ORTHO05D007381 1.1e-07 62.8 111 36.9
Lsat_1_v5_gn_3_65880 Lactuca sativa HOM05D006010 ORTHO05D007381 1.1e-07 62.8 281 26.7
PGSC0003DMG400013242 Solanum tuberosum HOM05D006010 ORTHO05D007381 1.1e-07 62.8 202 30.2
Solyc11g011490.2 Solanum lycopersicum HOM05D006010 ORTHO05D007381 1.4e-07 62.4 203 31.5
THA.LOC104827184 Tarenaya hassleriana HOM05D006010 ORTHO05D007381 1.4e-07 62.4 149 32.9
AL3G12280 Arabidopsis lyrata HOM05D006010 ORTHO05D007381 1.8e-07 62.0 123 36.6
AT3G02860 Arabidopsis thaliana HOM05D006010 ORTHO05D007381 2.4e-07 61.6 111 37.8
Gohir.D10G083400 Gossypium hirsutum HOM05D006010 ORTHO05D007381 2.4e-07 61.6 145 35.2
Gorai.011G090700 Gossypium raimondii HOM05D006010 ORTHO05D007381 2.4e-07 61.6 145 35.2
Hund11982 Selenicereus undatus HOM05D006010 ORTHO05D007381 2.4e-07 61.6 179 32.4
Sp3g01890 Schrenkiella parvula HOM05D006010 ORTHO05D007381 3.1e-07 61.2 111 36.9
A05p44250 Brassica napus HOM05D006010 ORTHO05D007381 4.0e-07 60.8 197 29.9
BraA06t23281Z Brassica rapa HOM05D000919 ORTHO05D004442 4.0e-07 60.8 197 29.9
CANSAT01G2297 Cannabis sativa HOM05D006010 ORTHO05D007381 4.0e-07 60.8 129 36.4
Medtr3g031750 Medicago truncatula HOM05D000092 ORTHO05D013095 4.0e-07 60.8 229 27.9
Sed0018686 Sechium edule HOM05D006010 ORTHO05D007381 5.3e-07 60.5 65 47.7
Thecc.06G019600 Theobroma cacao HOM05D006010 ORTHO05D007381 5.3e-07 60.5 188 28.7
Sed0023512 Sechium edule HOM05D006010 ORTHO05D007381 6.9e-07 60.1 68 45.6
AagrBONN_evm.TU.Sc2ySwM_369.381 Anthoceros agrestis HOM05D006010 ORTHO05D007381 9.0e-07 59.7 131 35.9
EL10Ac3g05516 Beta vulgaris HOM05D006010 ORTHO05D007381 9.0e-07 59.7 258 26.4
Sabra17G0114300 Salix brachista HOM05D006010 ORTHO05D007381 9.0e-07 59.7 204 31.4
Thhalv10021193m.g Eutrema salsugineum HOM05D006010 ORTHO05D007381 2.0e-06 58.5 177 29.4
Nn3g17023 Nelumbo nucifera HOM05D006010 ORTHO05D007381 2.6e-06 58.2 138 37.7
SGA_v2.0_scaffold115G32097 Striga asiatica HOM05D006010 ORTHO05D007381 2.6e-06 58.2 130 36.9
TPR.G27790 Trifolium pratense HOM05D008660 ORTHO05D013095 2.6e-06 58.2 159 30.2
CAN.G222.64 Capsicum annuum HOM05D006010 ORTHO05D007381 3.4e-06 57.8 202 31.2
CARHR076870 Cardamine hirsuta HOM05D006010 ORTHO05D007381 3.4e-06 57.8 122 38.5
FAN28G1345 Fragaria x ananassa HOM05D006010 ORTHO05D007381 4.5e-06 57.4 195 31.3
MD07G1042200 Malus domestica HOM05D006010 ORTHO05D007381 5.8e-06 57.0 253 26.5
Sabra17G0111300 Salix brachista HOM05D006010 ORTHO05D007381 5.8e-06 57.0 249 29.7
Peaxi162Scf00464g00430 Petunia axillaris HOM05D006010 ORTHO05D007381 9.9e-06 56.2 261 27.6
TAR623G0083 Trochodendron aralioides HOM05D006010 ORTHO05D007381 9.9e-06 56.2 247 28.3


User provided reference genes

Program Settings