Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 4.0e-84 314.7 155 100.0
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 1.8e-81 305.8 155 96.1
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 8.6e-71 270.4 155 85.2
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 8.6e-71 270.4 155 85.2
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 9.5e-70 266.9 155 84.5
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.2e-69 266.5 155 83.9
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 1.8e-68 262.7 155 81.9
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 5.2e-68 261.2 155 81.3
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 5.2e-68 261.2 147 87.1
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 1.5e-67 259.6 155 80.6
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 2.6e-67 258.8 155 81.3
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 2.9e-66 255.4 155 74.8
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 3.2e-65 251.9 155 74.2
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 4.1e-65 251.5 155 76.1
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 5.4e-65 251.1 152 77.6
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 5.4e-65 251.1 155 74.8
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 9.2e-65 250.4 155 76.1
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 1.6e-64 249.6 155 76.1
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 4.6e-64 248.1 154 76.0
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 6.0e-64 247.7 155 76.8
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 6.0e-64 247.7 152 77.0
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 1.0e-63 246.9 155 76.1
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 1.7e-63 246.1 155 73.5
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 3.9e-63 245.0 155 72.9
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 3.3e-62 241.9 155 72.9
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 4.3e-62 241.5 155 73.5
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 4.3e-62 241.5 155 71.0
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 7.3e-62 240.7 155 74.2
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 7.3e-62 240.7 155 74.2
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 1.6e-61 239.6 155 72.3
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 2.1e-61 239.2 155 72.3
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 2.8e-61 238.8 155 70.3
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 3.6e-61 238.4 155 74.8
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 3.6e-61 238.4 155 71.6
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 3.6e-61 238.4 155 70.3
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 3.6e-61 238.4 155 71.6
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 4.7e-61 238.0 155 72.3
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 4.7e-61 238.0 155 72.3
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 4.7e-61 238.0 155 74.8
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 8.1e-61 237.3 155 74.8
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 1.1e-60 236.9 155 71.6
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 1.1e-60 236.9 155 72.9
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 4.0e-60 235.0 155 69.0
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 6.8e-60 234.2 155 70.3
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 6.8e-60 234.2 155 73.5
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 1.2e-59 233.4 155 70.3
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 2.0e-59 232.6 155 71.0
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 2.0e-59 232.6 155 69.7
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 2.6e-59 232.3 155 71.6
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 2.6e-59 232.3 152 73.7
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 3.4e-59 231.9 155 70.3
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 3.4e-59 231.9 155 68.4
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 4.4e-59 231.5 155 68.4
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 5.8e-59 231.1 155 72.9
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 5.8e-59 231.1 155 69.7
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 9.9e-59 230.3 155 68.4
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 9.9e-59 230.3 155 72.3
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 2.2e-58 229.2 155 71.6
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 2.9e-58 228.8 155 71.0
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 2.9e-58 228.8 155 71.0
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 3.7e-58 228.4 155 69.0
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 6.4e-58 227.6 155 71.0
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 6.4e-58 227.6 155 69.7
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 8.3e-58 227.3 155 68.4
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 1.4e-57 226.5 155 70.3
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 1.4e-57 226.5 174 66.1
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 2.4e-57 225.7 155 70.3
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 3.2e-57 225.3 155 71.6
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 3.2e-57 225.3 155 69.7
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 5.4e-57 224.6 155 70.3
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 7.1e-57 224.2 156 69.9
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 7.1e-57 224.2 156 69.9
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 1.2e-56 223.4 145 71.0
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 1.6e-56 223.0 155 67.1
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 2.1e-56 222.6 155 66.5
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 6.0e-56 221.1 155 69.7
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 1.3e-55 219.9 155 67.7
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 2.3e-55 219.2 153 68.0
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 6.6e-55 217.6 155 66.5
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 1.1e-54 216.9 155 69.0
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 1.5e-54 216.5 155 68.4
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 1.9e-54 216.1 147 72.1
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 2.5e-54 215.7 155 67.1
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 5.6e-54 214.5 154 64.3
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 7.3e-54 214.2 155 62.6
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 9.5e-54 213.8 152 65.1
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 1.2e-53 213.4 145 69.0
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 1.6e-53 213.0 135 71.9
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 3.6e-53 211.8 155 67.1
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 6.2e-53 211.1 155 65.2
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 1.1e-52 210.3 156 63.5
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 1.8e-52 209.5 151 67.5
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 1.8e-52 209.5 155 67.7
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 2.4e-52 209.1 133 73.7
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 4.0e-52 208.4 156 63.5
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 4.0e-52 208.4 156 63.5
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 4.0e-52 208.4 156 63.5
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 3.4e-51 205.3 155 65.2
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 5.8e-51 204.5 214 50.9
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 7.6e-51 204.1 156 62.2
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 9.9e-51 203.8 150 68.0
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 1.3e-50 203.4 127 74.8
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 2.2e-50 202.6 133 72.9
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 2.9e-50 202.2 146 67.8
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 1.4e-49 199.9 155 65.2
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.9e-49 199.5 150 67.3
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 4.2e-49 198.4 155 58.7
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 9.2e-49 197.2 146 65.1
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 4.6e-48 194.9 156 60.3
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 6.0e-48 194.5 153 59.5
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 4.3e-46 188.3 188 51.1
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 1.3e-45 186.8 154 55.8
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 1.3e-45 186.8 152 56.6
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 1.6e-45 186.4 154 55.2
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 1.6e-45 186.4 154 55.8
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 2.1e-45 186.0 154 55.8
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 1.1e-44 183.7 162 58.6
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 1.1e-44 183.7 148 60.8
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 9.0e-44 180.6 153 55.6
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 3.8e-42 175.3 128 60.2
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 1.2e-40 170.2 114 71.9
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 2.3e-39 166.0 106 70.8
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 5.1e-39 164.9 106 69.8
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 6.6e-39 164.5 153 54.9
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 6.2e-37 157.9 99 76.8
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 2.6e-35 152.5 144 50.0
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 1.7e-34 149.8 103 67.0
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 2.9e-34 149.1 89 78.7
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.4e-33 146.7 104 69.2
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 9.3e-33 144.1 152 52.6
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 6.7e-31 137.9 137 51.8
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 1.3e-29 133.7 152 46.1
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 1.3e-29 133.7 128 53.1
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 3.7e-29 132.1 109 61.5
QL09p006057 Quercus lobata HOM05D000605 ORTHO05D001937 8.1e-29 131.0 83 73.5
Phvul.L004350 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 6.7e-23 111.3 68 80.9
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.5e-22 110.2 61 86.9
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.5e-22 110.2 61 86.9
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 9.0e-20 100.9 153 36.6
Mapoly0096s0024 Marchantia polymorpha HOM05D005446 ORTHO05D006597 1.2e-19 100.5 130 40.8
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 1.1e-17 94.0 50 86.0
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 7.9e-16 87.8 129 35.7
MELO3C018158.2 Cucumis melo HOM05D005446 ORTHO05D006597 1.2e-11 73.9 68 54.4
MCO15G566 Micromonas commoda HOM05D005446 ORTHO05D006597 8.5e-10 67.8 117 29.9


User provided reference genes

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