Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 0.0e+00 1650.2 810 100.0
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 0.0e+00 1525.0 819 92.7
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 0.0e+00 1265.0 828 76.3
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 0.0e+00 1256.1 832 75.4
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 0.0e+00 1204.5 819 72.6
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 0.0e+00 1193.7 821 72.1
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 0.0e+00 1171.4 819 71.6
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 0.0e+00 1167.1 813 71.7
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 0.0e+00 1150.6 819 70.8
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 0.0e+00 1115.5 832 65.9
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 0.0e+00 1089.7 830 65.2
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 0.0e+00 1088.9 870 62.8
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 0.0e+00 1083.2 832 63.9
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 0.0e+00 1082.0 834 64.1
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 0.0e+00 1082.0 834 64.1
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 2.7e-309 1065.1 833 63.4
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 1.8e-308 1062.4 831 64.5
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 8.2e-306 1053.5 833 63.6
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 4.1e-305 1051.2 827 64.3
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 5.3e-305 1050.8 833 63.1
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 1.5e-304 1049.3 828 63.6
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 3.4e-304 1048.1 829 64.3
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 1.1e-302 1043.1 833 62.2
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 7.2e-302 1040.4 842 62.7
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 3.9e-300 1034.6 826 61.9
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 1.1e-299 1033.1 829 62.4
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 1.3e-298 1029.6 835 62.9
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 1.7e-298 1029.2 835 62.8
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 4.8e-298 1027.7 836 62.7
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 1.8e-297 1025.8 835 62.3
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 9.1e-297 1023.5 844 62.0
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 5.9e-296 1020.8 837 60.7
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 5.9e-296 1020.8 846 61.7
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 6.5e-295 1017.3 831 60.6
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 1.9e-294 1015.8 836 61.6
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 8.8e-292 1006.9 825 60.2
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.5e-291 1006.1 829 60.4
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 2.6e-291 1005.4 830 60.4
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 7.4e-291 1003.8 837 60.3
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 1.7e-290 1002.7 841 59.8
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 4.8e-290 1001.1 814 62.2
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 1.3e-287 993.0 817 62.7
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 2.2e-287 992.3 823 59.3
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 6.5e-287 990.7 835 60.1
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 7.2e-286 987.3 833 59.7
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 2.1e-285 985.7 839 59.5
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 3.6e-285 984.9 832 59.6
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 6.1e-285 984.2 836 60.6
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 3.9e-284 981.5 829 61.8
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 1.5e-283 979.5 837 58.9
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 7.4e-283 977.2 834 59.6
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 2.2e-282 975.7 813 59.9
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 2.2e-282 975.7 835 59.5
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 2.6e-280 968.8 834 59.2
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 5.9e-280 967.6 832 58.9
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 1.3e-279 966.5 832 62.3
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 2.9e-279 965.3 808 62.7
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 2.9e-279 965.3 834 59.8
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 3.8e-279 964.9 831 58.6
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 5.0e-279 964.5 816 60.8
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 5.5e-278 961.1 841 59.5
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.2e-277 959.9 840 58.7
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.2e-277 959.9 867 56.9
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 1.2e-277 959.9 837 60.3
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 2.1e-277 959.1 813 58.8
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.7e-277 958.7 840 59.2
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 6.1e-277 957.6 840 58.6
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 8.0e-277 957.2 834 58.9
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 2.3e-276 955.7 831 58.7
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 2.3e-276 955.7 823 59.8
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.6e-275 952.2 842 58.6
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 5.7e-275 951.0 843 59.2
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 1.3e-274 949.9 830 59.0
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 2.2e-274 949.1 837 57.9
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 1.4e-273 946.4 834 58.2
Oeu014279.1 Olea europaea HOM05D003723 ORTHO05D004306 1.4e-273 946.4 772 61.9
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 2.4e-273 945.7 843 59.1
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 3.1e-273 945.3 889 55.7
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 4.1e-273 944.9 837 59.5
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 1.6e-272 943.0 839 57.4
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 1.0e-271 940.3 835 58.1
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 8.5e-271 937.2 833 57.3
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 8.5e-271 937.2 827 58.8
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.9e-270 936.0 704 66.1
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 3.2e-270 935.3 804 59.1
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 5.5e-270 934.5 834 57.6
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 5.5e-270 934.5 834 57.6
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 9.4e-270 933.7 837 57.5
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 1.6e-269 932.9 822 58.6
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 2.1e-269 932.6 827 58.2
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 2.1e-269 932.6 827 58.0
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 3.6e-269 931.8 830 57.6
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 3.6e-269 931.8 831 58.4
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 4.7e-269 931.4 830 57.6
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 1.0e-268 930.2 765 61.2
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 3.0e-268 928.7 840 57.4
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 1.5e-267 926.4 830 59.2
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 1.7e-266 922.9 832 57.1
SalBow2G1921 Salvia bowleyana HOM05D003723 ORTHO05D004306 1.7e-266 922.9 789 59.7
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 1.1e-265 920.2 828 56.4
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 1.4e-265 919.8 828 56.6
Hund05292 Selenicereus undatus HOM05D003723 ORTHO05D004306 1.4e-265 919.8 744 61.7
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 1.8e-265 919.5 726 63.8
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 2.4e-265 919.1 826 56.7
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 3.1e-265 918.7 827 56.8
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 2.3e-263 912.5 830 55.9
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 1.1e-262 910.2 818 55.9
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 4.2e-262 908.3 818 56.8
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 4.2e-262 908.3 821 56.9
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 5.6e-262 907.9 821 56.6
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 9.5e-262 907.1 823 56.6
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 9.5e-262 907.1 831 57.5
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 1.6e-261 906.4 831 55.0
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 8.0e-261 904.0 826 56.3
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 1.0e-260 903.7 859 56.0
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 6.8e-260 901.0 833 54.7
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 1.2e-259 900.2 845 55.4
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 1.3e-258 896.7 731 62.4
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 1.7e-258 896.3 824 56.3
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 4.9e-258 894.8 820 55.0
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 5.4e-257 891.3 833 54.9
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 2.7e-256 889.0 814 55.3
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 1.0e-255 887.1 830 57.0
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 1.3e-255 886.7 863 54.3
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 2.9e-255 885.6 823 55.9
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 1.9e-254 882.9 826 57.3
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 6.2e-253 877.9 811 55.2
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 3.4e-251 872.1 812 54.4
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 7.5e-251 870.9 830 55.7
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 9.8e-251 870.5 806 55.0
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 5.4e-249 864.8 817 55.3
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 9.2e-249 864.0 841 55.4
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 2.7e-248 862.4 826 55.9
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 7.3e-246 854.4 772 56.6
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 1.4e-244 850.1 638 66.3
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 8.9e-244 847.4 820 53.8
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 8.6e-239 830.9 748 55.9
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 1.6e-237 826.6 846 51.5
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 4.4e-235 818.5 830 51.7
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 3.5e-232 808.9 829 52.5
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 3.9e-231 805.4 828 52.3
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 1.3e-215 753.8 702 55.0
Ca_23258_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 1.2e-211 740.7 718 56.4
Lsat_1_v5_gn_1_1120 Lactuca sativa HOM05D003723 ORTHO05D004306 6.3e-173 612.1 591 55.5
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 1.2e-168 597.8 903 38.2
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 8.8e-159 565.1 921 36.8
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 7.0e-156 555.4 838 39.0
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 2.2e-154 550.4 434 63.8
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.4e-148 531.2 929 35.8
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 4.0e-135 486.5 902 35.1
CDE04G2329 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 1.7e-125 454.5 410 55.6
DCAR_032227 Daucus carota HOM05D003723 ORTHO05D004306 2.5e-121 440.7 449 52.3
AagrBONN_evm.TU.Sc2ySwM_344.864 Anthoceros agrestis HOM05D003723 ORTHO05D004306 2.5e-113 414.1 642 38.8
Oeu036976.1 Olea europaea HOM05D003723 ORTHO05D004306 1.2e-110 405.2 322 63.0
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 2.3e-106 391.0 495 44.6
Actinidia19301 Actinidia chinensis HOM05D003723 ORTHO05D004306 4.5e-94 350.1 298 60.4
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 3.7e-88 330.5 254 63.4
SEGI_10786 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 2.0e-78 298.1 314 49.4
Pp3c18_6690 Physcomitrium patens HOM05D003723 ORTHO05D004306 2.6e-78 297.7 695 32.4
Lsat_1_v5_gn_1_440 Lactuca sativa HOM05D003723 ORTHO05D004306 2.5e-76 291.2 264 58.0
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 3.1e-71 274.2 251 55.0
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 6.9e-71 273.1 220 59.1
Dinv39213 Davidia involucrata HOM05D003723 ORTHO05D004306 1.0e-61 242.7 157 73.2
MCO10G249 Micromonas commoda HOM05D003723 ORTHO05D004306 1.4e-60 238.8 929 25.2
Oeu053086.3 Olea europaea HOM05D003723 ORTHO05D004306 4.5e-54 217.2 261 49.0
TAR376G0468 Trochodendron aralioides HOM05D003723 ORTHO05D004306 4.7e-43 180.6 122 73.8
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 1.2e-41 176.0 193 46.1
HanXRQChr14g0443971 Helianthus annuus HOM05D003723 ORTHO05D004306 4.8e-40 170.6 170 54.7
Cre13.g606850 Chlamydomonas reinhardtii HOM05D003723 ORTHO05D004306 2.3e-37 161.8 886 22.8
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 1.5e-36 159.1 197 44.7
TAR376G0760 Trochodendron aralioides HOM05D003723 ORTHO05D004306 3.2e-36 157.9 111 65.8
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 8.0e-35 153.3 195 42.1
TAR376G0365 Trochodendron aralioides HOM05D003723 ORTHO05D004306 5.7e-33 147.1 109 64.2
PRCOL_00004412 Prasinoderma coloniale HOM05D003723 ORTHO05D004306 1.7e-32 145.6 461 28.0
Migut.N02791 Erythranthe guttata HOM05D003723 ORTHO05D004306 1.8e-31 142.1 103 65.0
Cfa027112 Carpinus fangiana HOM05D003723 ORTHO05D004306 1.5e-28 132.5 657 24.7
Psat7g031120 Pisum sativum HOM05D003723 ORTHO05D004306 7.0e-23 113.6 93 67.7
HanXRQChr15g0495401 Helianthus annuus HOM05D003723 ORTHO05D004306 1.3e-21 109.4 110 51.8
CSS0021932 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 7.3e-20 103.6 104 48.1
CSS0044410 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 7.3e-20 103.6 104 48.1
CSS0002287 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 9.5e-20 103.2 104 49.0
CSS0047227 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 4.0e-18 97.8 104 48.1
CSS0041779 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 9.2e-15 86.7 95 46.3
CSS0003704 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.1e-07 63.2 104 38.5


User provided reference genes

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