Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 1.4e-170 602.8 299 100.0
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 9.2e-146 520.4 325 81.2
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 9.3e-114 414.1 323 67.5
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 4.6e-113 411.8 334 67.1
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 5.6e-111 404.8 332 65.7
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 2.8e-110 402.5 330 65.5
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 4.5e-108 395.2 294 69.7
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 5.8e-108 394.8 283 69.6
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 4.9e-107 391.7 333 62.8
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 2.0e-100 369.8 250 74.0
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 3.8e-99 365.5 250 75.2
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 1.3e-96 357.1 320 57.5
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 4.3e-95 352.1 319 56.7
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 2.8e-94 349.4 314 56.7
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 8.2e-94 347.8 304 57.6
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 3.1e-93 345.9 326 54.6
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 2.0e-92 343.2 282 61.0
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 1.7e-91 340.1 319 56.4
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 2.2e-91 339.7 313 56.2
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 1.1e-90 337.4 292 58.6
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 1.1e-90 337.4 326 54.9
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 3.2e-90 335.9 296 58.1
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 3.2e-90 335.9 320 55.0
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 5.5e-90 335.1 318 55.0
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 7.2e-90 334.7 296 57.4
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 9.4e-90 334.3 322 54.7
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 2.7e-89 332.8 282 59.6
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 4.6e-89 332.0 324 55.2
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 7.9e-89 331.3 318 53.8
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 1.4e-88 330.5 281 58.4
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 3.9e-88 328.9 281 58.4
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 8.8e-88 327.8 322 54.7
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 2.5e-87 326.2 282 58.5
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 2.5e-87 326.2 286 57.7
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 3.3e-87 325.9 295 55.6
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 3.3e-87 325.9 286 58.0
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 2.2e-86 323.2 291 57.4
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 3.7e-86 322.4 332 53.0
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 6.3e-86 321.6 334 50.9
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 2.4e-85 319.7 303 55.4
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 3.1e-85 319.3 298 56.0
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 1.5e-84 317.0 283 57.6
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 2.6e-84 316.2 283 55.8
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 3.4e-84 315.8 281 56.6
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 7.7e-84 314.7 281 56.2
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 6.5e-83 311.6 319 52.4
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 2.5e-82 309.7 235 70.2
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 4.2e-82 308.9 295 53.2
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 1.2e-81 307.4 301 52.8
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 1.6e-81 307.0 316 54.1
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 2.7e-81 306.2 320 50.9
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.7e-81 306.2 321 50.5
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 1.0e-80 304.3 283 54.1
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 2.3e-80 303.1 292 54.1
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 3.0e-80 302.8 321 50.2
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 5.1e-80 302.0 321 52.6
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 6.7e-80 301.6 301 52.2
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 6.7e-80 301.6 336 48.5
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 4.4e-79 298.9 282 53.5
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 5.7e-79 298.5 286 53.5
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 2.2e-78 296.6 293 53.9
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 8.2e-78 294.7 319 48.9
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 2.4e-77 293.1 324 47.8
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 3.1e-77 292.7 324 47.2
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 4.1e-77 292.4 282 52.5
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 4.1e-77 292.4 296 52.4
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 5.3e-77 292.0 324 47.8
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 5.3e-77 292.0 291 52.2
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 7.0e-77 291.6 324 47.8
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 7.0e-77 291.6 245 59.2
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 9.1e-77 291.2 326 48.5
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 9.1e-77 291.2 322 47.8
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 9.1e-77 291.2 324 47.8
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 1.5e-76 290.4 250 58.4
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 2.6e-76 289.7 282 51.4
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 3.5e-76 289.3 282 51.8
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 5.9e-76 288.5 323 48.0
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 1.0e-75 287.7 295 47.5
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 1.3e-75 287.3 282 51.4
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 3.8e-75 285.8 325 48.0
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 3.8e-75 285.8 250 64.8
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 1.1e-74 284.3 248 58.1
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 1.8e-72 276.9 251 54.6
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 2.0e-71 273.5 257 54.1
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 5.3e-69 265.4 298 49.0
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 1.6e-68 263.8 256 52.7
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 2.6e-68 263.1 281 49.1
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 5.9e-68 261.9 300 47.3
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 7.7e-68 261.5 307 46.3
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 1.0e-67 261.2 287 47.7
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 2.2e-67 260.0 261 50.2
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 2.9e-67 259.6 257 50.6
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 5.0e-67 258.8 218 57.8
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 1.1e-66 257.7 148 78.4
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 1.0e-64 251.1 257 51.4
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 3.3e-63 246.1 305 45.9
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 2.9e-59 233.0 281 46.6
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 1.6e-57 227.3 149 67.8
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 3.6e-57 226.1 150 66.7
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 6.1e-57 225.3 148 65.5
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 5.2e-56 222.2 250 51.2
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 1.2e-55 221.1 150 64.0
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 2.0e-55 220.3 149 65.8
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 7.5e-55 218.4 150 65.3
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 1.1e-53 214.5 279 39.8
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 4.2e-50 202.6 148 60.8
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 9.5e-50 201.4 300 37.0
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 1.2e-49 201.1 278 37.8
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 2.6e-47 193.4 166 57.8
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 7.5e-47 191.8 278 38.8
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 4.1e-45 186.0 169 53.8
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 1.1e-37 161.4 227 44.5
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 1.4e-37 161.0 227 44.1
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 1.0e-35 154.8 114 61.4
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.2e-33 147.9 205 45.9
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 1.1e-32 144.8 96 72.9
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 1.5e-31 141.0 96 70.8
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 1.3e-30 137.9 94 79.8
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 2.4e-29 133.7 213 31.9
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 2.7e-28 130.2 144 50.7
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 6.6e-27 125.6 106 57.5
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.1e-26 124.8 112 58.0
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 1.9e-26 124.0 247 33.2
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 1.1e-24 118.2 74 67.6
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.8e-24 117.5 189 40.2
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 2.3e-24 117.1 92 55.4
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 4.4e-23 112.8 157 43.3
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 3.9e-19 99.8 75 57.3
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 4.3e-18 96.3 96 54.2
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.4e-13 80.5 79 51.9
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 2.7e-12 77.0 75 56.0
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 5.1e-11 72.8 67 55.2
Actinidia24333 Actinidia chinensis HOM05D005815 ORTHO05D007023 6.6e-11 72.4 86 51.2


User provided reference genes

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