Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G355800 Glycine max HOM05D003995 ORTHO05D004800 0.0e+00 1364.4 698 100.0
Phvul.005G170500 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 4.3e-295 1017.7 704 77.0
VMungo1080G0563 Vigna mungo HOM05D003995 ORTHO05D004800 1.5e-292 1009.2 695 77.3
Glyma.07G017700 Glycine max HOM05D003995 ORTHO05D004800 1.1e-266 923.3 717 70.4
Lj3g0012728 Lotus japonicus HOM05D003995 ORTHO05D004800 6.7e-264 914.1 716 69.6
Ca_11524_v3 Cicer arietinum L. HOM05D003995 ORTHO05D004800 2.5e-255 885.6 718 68.4
VMungo0331G0049 Vigna mungo HOM05D003995 ORTHO05D004800 1.3e-254 883.2 718 68.1
Psat4g198440 Pisum sativum HOM05D003995 ORTHO05D004800 5.3e-253 877.9 722 67.2
Medtr8g013720 Medicago truncatula HOM05D003995 ORTHO05D004800 1.3e-251 873.2 719 66.5
TPR.G14825 Trifolium pratense HOM05D003995 ORTHO05D004800 1.6e-249 866.3 721 67.4
Lalb_Chr25g0280081 Lupinus albus HOM05D003995 ORTHO05D004800 2.1e-249 865.9 717 67.6
Lalb_Chr01g0013091 Lupinus albus HOM05D003995 ORTHO05D004800 1.4e-248 863.2 707 68.2
Phvul.010G147000 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 3.0e-248 862.1 717 66.1
arahy.Tifrunner.gnm1.ann1.8U94IH Arachis hypogaea HOM05D003995 ORTHO05D004800 8.5e-243 844.0 719 65.4
Glyma.08G202900 Glycine max HOM05D003995 ORTHO05D004800 6.3e-238 827.8 717 65.1
QL05p021104 Quercus lobata HOM05D003995 ORTHO05D004800 4.0e-224 781.9 723 60.4
Thecc.06G096000 Theobroma cacao HOM05D003995 ORTHO05D004800 4.1e-221 771.9 722 60.7
Prupe.3G063200 Prunus persica HOM05D003995 ORTHO05D004800 1.5e-218 763.5 721 58.9
Cfa002115 Carpinus fangiana HOM05D003995 ORTHO05D004800 1.0e-216 757.3 721 58.5
COL.COLO4_30474 Corchorus olitorius HOM05D003995 ORTHO05D004800 5.7e-215 751.5 719 59.7
GSVIVG01017039001 Vitis vinifera HOM05D003995 ORTHO05D004800 1.1e-213 747.3 724 57.9
FvH4_6g32000 Fragaria vesca HOM05D003995 ORTHO05D004800 2.4e-213 746.1 721 58.8
FAN05G2434 Fragaria x ananassa HOM05D003995 ORTHO05D004800 2.0e-212 743.0 737 57.7
CiPaw.02G147500 Carya illinoinensis HOM05D003995 ORTHO05D004800 2.7e-212 742.7 722 57.6
Haze_16334 Corylus avellana HOM05D003995 ORTHO05D004800 2.7e-212 742.7 738 57.9
Potri.001G187000 Populus trichocarpa HOM05D003995 ORTHO05D004800 3.3e-210 735.7 721 57.4
MD09G1207100 Malus domestica HOM05D003995 ORTHO05D004800 4.7e-209 731.9 723 57.3
Gohir.A02G119100 Gossypium hirsutum HOM05D003995 ORTHO05D004800 6.1e-209 731.5 721 58.7
Gohir.D03G059900 Gossypium hirsutum HOM05D003995 ORTHO05D004800 3.0e-208 729.2 720 58.5
Manes.04G131700 Manihot esculenta HOM05D003995 ORTHO05D004800 3.0e-208 729.2 721 56.4
Cpa.g.sc109.33 Carica papaya HOM05D003995 ORTHO05D004800 8.9e-208 727.6 713 57.9
Manes.11G036200 Manihot esculenta HOM05D003995 ORTHO05D004800 1.5e-207 726.9 739 56.7
Gorai.009G136200 Gossypium raimondii HOM05D003995 ORTHO05D004800 2.0e-207 726.5 722 58.2
Gohir.A05G128000 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.6e-207 726.1 722 58.0
Gohir.D05G132500 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.3e-206 723.8 722 58.2
CiPaw.01G233700 Carya illinoinensis HOM05D003995 ORTHO05D004800 2.8e-206 722.6 723 57.5
Hma1.2p1_1689F.1_g297670 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 3.2e-205 719.2 725 57.2
FAN14G0476 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.2e-204 717.2 721 57.4
Duzib235G0154 Durio zibethinus HOM05D003995 ORTHO05D004800 5.9e-204 714.9 705 56.7
Hma1.2p1_0659F.1_g197350 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 1.3e-203 713.8 723 57.8
Actinidia21699 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.7e-203 713.4 725 56.8
Gorai.003G063800 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.7e-203 713.4 713 58.3
CANSAT56G4226 Cannabis sativa HOM05D003995 ORTHO05D004800 3.9e-203 712.2 719 56.7
TWI75G1811 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 5.0e-203 711.8 714 56.6
Atru.chr1.3467 Acer truncatum HOM05D003995 ORTHO05D004800 6.6e-203 711.4 714 56.7
MD17G1187800 Malus domestica HOM05D003995 ORTHO05D004800 2.1e-201 706.4 730 55.9
CSS0043166 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 1.4e-200 703.7 722 56.1
CSS0042187 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 5.2e-200 701.8 721 56.0
TWI12G0239 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 9.8e-199 697.6 720 56.0
FAN02G0974 Fragaria x ananassa HOM05D003995 ORTHO05D004800 3.7e-198 695.7 721 56.0
Sc12g0009570 Simmondsia chinensis HOM05D003995 ORTHO05D004800 1.6e-196 690.3 721 55.8
Gorai.010G229800 Gossypium raimondii HOM05D003995 ORTHO05D004800 6.0e-196 688.3 718 55.3
TAR624G1104 Trochodendron aralioides HOM05D003995 ORTHO05D004800 1.0e-195 687.6 729 56.0
PGR102G1422 Punica granatum HOM05D003995 ORTHO05D004800 1.3e-195 687.2 722 55.4
TWI18G0079 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 8.6e-195 684.5 712 55.8
Dinv30461 Davidia involucrata HOM05D003995 ORTHO05D004800 1.1e-194 684.1 722 56.2
Gohir.D06G197450 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.5e-194 683.7 720 55.4
FAN09G2208 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.9e-194 683.3 721 55.6
THA.LOC104817968 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 4.3e-194 682.2 722 57.1
Hund06648 Selenicereus undatus HOM05D003995 ORTHO05D004800 5.6e-194 681.8 721 54.6
Aa31LG8G3420 Aethionema arabicum HOM05D003995 ORTHO05D004800 1.2e-191 674.1 720 55.1
TAR102G0002 Trochodendron aralioides HOM05D003995 ORTHO05D004800 2.6e-191 672.9 733 54.6
Cc00_g10390 Coffea canephora HOM05D003995 ORTHO05D004800 4.4e-191 672.2 723 54.6
EL10Ac9g22110 Beta vulgaris HOM05D003995 ORTHO05D004800 1.3e-190 670.6 719 54.0
Carub.0003s1602 Capsella rubella HOM05D003995 ORTHO05D004800 4.1e-189 665.6 716 55.0
A05p33250 Brassica napus HOM05D003995 ORTHO05D004800 7.1e-189 664.8 715 54.0
Eucgr.J02949 Eucalyptus grandis HOM05D003995 ORTHO05D004800 9.2e-189 664.5 722 54.0
Ciclev10027380m.g Citrus clementina HOM05D003995 ORTHO05D004800 1.6e-188 663.7 742 52.4
C05p50240 Brassica napus HOM05D003995 ORTHO05D004800 2.1e-188 663.3 713 54.0
Eucgr.F03056 Eucalyptus grandis HOM05D003995 ORTHO05D004800 2.7e-188 662.9 720 53.8
Sp3g14640 Schrenkiella parvula HOM05D003995 ORTHO05D004800 2.7e-188 662.9 719 54.0
BraA05t22150Z Brassica rapa HOM05D003995 ORTHO05D004800 6.0e-188 661.8 715 54.3
BcaC05g28900 Brassica carinata HOM05D003995 ORTHO05D004800 1.7e-187 660.2 715 54.1
BolC5t33775H Brassica oleracea HOM05D003995 ORTHO05D004800 1.7e-187 660.2 715 54.1
PGR102G1287 Punica granatum HOM05D003995 ORTHO05D004800 3.9e-187 659.1 724 53.9
AL3G29010 Arabidopsis lyrata HOM05D003995 ORTHO05D004800 6.6e-187 658.3 716 54.5
THA.LOC104810534 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 8.6e-187 657.9 722 54.8
Dinv38000 Davidia involucrata HOM05D003995 ORTHO05D004800 1.5e-186 657.1 710 55.2
AT3G16270 Arabidopsis thaliana HOM05D003995 ORTHO05D004800 1.9e-186 656.8 716 54.1
CARHR091480 Cardamine hirsuta HOM05D003995 ORTHO05D004800 2.5e-186 656.4 716 54.2
Thhalv10020187m.g Eutrema salsugineum HOM05D003995 ORTHO05D004800 2.5e-186 656.4 714 53.8
Aqoxy7G01498 Aquilegia oxysepala HOM05D003995 ORTHO05D004800 2.8e-185 652.9 718 53.1
MSTRG.23509 Avicennia marina HOM05D003995 ORTHO05D004800 3.6e-185 652.5 719 51.6
BcaB06g25717 Brassica carinata HOM05D003995 ORTHO05D004800 3.6e-185 652.5 714 53.5
Peaxi162Scf00090g00073 Petunia axillaris HOM05D003995 ORTHO05D004800 8.1e-185 651.4 723 53.7
Oeu017626.1 Olea europaea HOM05D003995 ORTHO05D004800 3.1e-184 649.4 713 52.9
CSS0032416 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 3.4e-183 646.0 718 54.2
AUR62031875 Chenopodium quinoa HOM05D003995 ORTHO05D004800 2.9e-182 642.9 718 51.8
Oeu050081.1 Olea europaea HOM05D003995 ORTHO05D004800 2.4e-181 639.8 714 52.8
CsaV3_3G023750 Cucumis sativus L. HOM05D003995 ORTHO05D004800 1.2e-180 637.5 725 52.1
Sed0003559 Sechium edule HOM05D003995 ORTHO05D004800 3.5e-180 636.0 716 52.5
PSO210G6397 Papaver somniferum HOM05D003995 ORTHO05D004800 1.3e-179 634.0 737 51.7
PSO210G6330 Papaver somniferum HOM05D003995 ORTHO05D004800 3.3e-178 629.4 743 51.7
PGSC0003DMG400008535 Solanum tuberosum HOM05D003995 ORTHO05D004800 3.3e-178 629.4 724 52.6
Nitab4.5_0002549g0020 Nicotiana tabacum HOM05D003995 ORTHO05D004800 7.3e-178 628.2 721 52.3
Sed0011470 Sechium edule HOM05D003995 ORTHO05D004800 1.2e-177 627.5 725 51.3
Migut.H00960 Erythranthe guttata HOM05D003995 ORTHO05D004800 8.1e-177 624.8 708 50.7
CAN.G60.5 Capsicum annuum HOM05D003995 ORTHO05D004800 1.5e-175 620.5 720 51.5
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 2.2e-174 616.7 708 52.8
Ah.01g005620 Amaranthus hybridus HOM05D003995 ORTHO05D004800 3.8e-174 615.9 723 51.0
AUR62022169 Chenopodium quinoa HOM05D003995 ORTHO05D004800 9.3e-173 611.3 716 50.0
DCAR_019957 Daucus carota HOM05D003995 ORTHO05D004800 6.6e-171 605.1 722 50.7
Lsat_1_v5_gn_2_39201 Lactuca sativa HOM05D003995 ORTHO05D004800 1.4e-168 597.4 732 50.4
Sopen04g017970 Solanum pennellii HOM05D003995 ORTHO05D004800 1.4e-168 597.4 722 50.7
Solyc04g047770.3 Solanum lycopersicum HOM05D003995 ORTHO05D004800 3.1e-168 596.3 721 50.8
Rhsim08G0225700 Rhododendron simsii HOM05D003995 ORTHO05D004800 1.3e-166 590.9 725 51.3
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 4.6e-164 582.4 734 49.9
SGA_v2.0_scaffold44G16540 Striga asiatica HOM05D003995 ORTHO05D004800 1.5e-162 577.4 724 47.5
Nitab4.5_0004354g0010 Nicotiana tabacum HOM05D003995 ORTHO05D004800 1.9e-162 577.0 880 43.8
HanXRQChr14g0434431 Helianthus annuus HOM05D003995 ORTHO05D004800 7.3e-162 575.1 724 51.4
HanXRQChr01g0017801 Helianthus annuus HOM05D003995 ORTHO05D004800 3.1e-160 569.7 716 49.0
ATR0705G117 Amborella trichopoda HOM05D003995 ORTHO05D004800 2.2e-158 563.5 721 49.4
CDE02G3541 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 1.6e-156 557.4 727 48.7
SalBow1G2060 Salvia bowleyana HOM05D003995 ORTHO05D004800 1.1e-152 544.7 709 47.4
CDE08G1118 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 1.8e-152 543.9 711 48.8
MELO3C012986.2 Cucumis melo HOM05D003995 ORTHO05D004800 5.3e-152 542.3 658 50.8
Nn2g11632 Nelumbo nucifera HOM05D003995 ORTHO05D004800 6.9e-152 542.0 722 45.8
ECA248G2833 Erigeron canadensis HOM05D003995 ORTHO05D004800 4.5e-151 539.3 694 48.8
SHI11063 Sapria himalayana HOM05D003995 ORTHO05D004800 4.6e-148 529.3 699 47.8
Os01g0232400 Oryza sativa ssp. japonica HOM05D003995 ORTHO05D004800 4.1e-144 516.2 727 46.2
Zm00001eb339300 Zea mays HOM05D003995 ORTHO05D004800 9.0e-144 515.0 728 45.7
Zm00001eb119170 Zea mays HOM05D003995 ORTHO05D004800 2.5e-141 506.9 721 44.8
HPP92_008092 Vanilla planifolia HOM05D003995 ORTHO05D004800 1.0e-134 485.0 734 44.0
SEGI_23305 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 9.1e-128 461.8 740 41.2
Nn3g18163 Nelumbo nucifera HOM05D003995 ORTHO05D004800 2.9e-126 456.8 391 63.2
Gohir.A06G188875 Gossypium hirsutum HOM05D003995 ORTHO05D004800 6.5e-126 455.7 382 64.9
SalBow1G1048 Salvia bowleyana HOM05D003995 ORTHO05D004800 4.2e-125 453.0 383 61.9
SalBow1G5856 Salvia bowleyana HOM05D003995 ORTHO05D004800 4.2e-125 453.0 383 61.9
QL04p048641 Quercus lobata HOM05D003995 ORTHO05D004800 6.5e-118 429.1 620 44.7
Glyma.15G018300 Glycine max HOM05D003995 ORTHO05D004800 2.5e-117 427.2 240 90.8
MBI01_g24453_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.1e-114 418.3 709 41.5
arahy.Tifrunner.gnm1.ann1.QE1TJP Arachis hypogaea HOM05D003995 ORTHO05D004800 4.1e-112 409.8 388 60.6
RcHm_v2.0_Chr2g0139591 Rosa chinensis HOM05D003995 ORTHO05D004800 2.7e-111 407.1 329 66.9
vmacro18871 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 1.1e-109 401.7 329 66.3
Lj4A820G41 Lonicera japonica HOM05D003995 ORTHO05D004800 2.8e-105 387.1 548 47.1
AagrBONN_evm.TU.Sc2ySwM_362.567 Anthoceros agrestis HOM05D003995 ORTHO05D004800 1.6e-95 354.8 774 34.5
Mapoly0022s0096 Marchantia polymorpha HOM05D003995 ORTHO05D004800 6.6e-94 349.4 755 36.4
Pp3c2_17390 Physcomitrium patens HOM05D003995 ORTHO05D004800 3.6e-92 343.6 738 36.9
RcHm_v2.0_Chr2g0139601 Rosa chinensis HOM05D003995 ORTHO05D004800 5.2e-91 339.7 393 52.7
SMO340G0180 Selaginella moellendorffii HOM05D003995 ORTHO05D004800 1.7e-89 334.7 736 35.7
Hund00665 Selenicereus undatus HOM05D003995 ORTHO05D004800 2.3e-86 324.3 491 41.8
Sabra01G0153300 Salix brachista HOM05D003995 ORTHO05D004800 3.6e-84 317.0 395 49.6
MBI01_g39826_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.2e-76 292.0 623 36.8
CBR_g36315 Chara braunii HOM05D003995 ORTHO05D004800 1.2e-55 222.2 496 34.3
Actinidia39150 Actinidia chinensis HOM05D003995 ORTHO05D004800 3.0e-54 217.6 422 41.0
CBR_g31940 Chara braunii HOM05D003995 ORTHO05D004800 1.1e-51 209.1 509 33.4
Actinidia32710 Actinidia chinensis HOM05D003995 ORTHO05D004800 3.2e-48 197.6 157 69.4
ClCG07G013220 Citrullus lanatus HOM05D003995 ORTHO05D004800 1.6e-47 195.3 337 40.1
Actinidia32709 Actinidia chinensis HOM05D003995 ORTHO05D004800 9.3e-40 169.5 333 38.7
vmacro18870 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 1.2e-39 169.1 350 36.9
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 1.6e-36 158.7 199 43.2
CDE02G4060 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 2.8e-36 157.9 171 49.1
HanXRQChr10g0310971 Helianthus annuus HOM05D003995 ORTHO05D004800 3.0e-30 137.9 168 50.0
Actinidia09000 Actinidia chinensis HOM05D003995 ORTHO05D004800 8.7e-30 136.3 131 61.8
Cre12.g545300 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 9.0e-27 126.3 413 27.1
PRCOL_00002233 Prasinoderma coloniale HOM05D003995 ORTHO05D004800 1.2e-23 115.9 472 26.3
Cre12.g545150 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 1.6e-23 115.5 382 28.8
Lj4C820T9 Lonicera japonica HOM05D003995 ORTHO05D004800 2.1e-23 115.2 69 81.2
FAN18G0014 Fragaria x ananassa HOM05D003995 ORTHO05D004800 4.6e-23 114.0 69 78.3
Actinidia08998 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.9e-17 94.7 57 82.5
MBI07_g11499_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.1e-16 92.8 62 71.0
FvH4_5g23151 Fragaria vesca HOM05D003995 ORTHO05D004800 7.9e-15 86.7 51 80.4
SEGI_12342 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 1.4e-14 85.9 82 48.8
Actinidia39149 Actinidia chinensis HOM05D003995 ORTHO05D004800 6.7e-14 83.6 157 35.0
FvH4_7g32131 Fragaria vesca HOM05D003995 ORTHO05D004800 6.7e-14 83.6 51 78.4
Gohir.D03G024850 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.6e-13 81.6 89 52.8
Pp3c1_18430 Physcomitrium patens HOM05D003995 ORTHO05D004800 2.6e-13 81.6 421 28.3
Lsat_1_v5_gn_7_27180 Lactuca sativa HOM05D003995 ORTHO05D004605 7.4e-13 80.1 56 69.6
Gorai.003G083400 Gossypium raimondii HOM05D003995 ORTHO05D004800 6.3e-12 77.0 89 49.4
MCO13G545 Micromonas commoda HOM05D003995 ORTHO05D004800 3.8e-09 67.8 388 22.4
MBI03_g21265_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.4e-06 59.3 39 66.7


User provided reference genes

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