Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 0.0e+00 1770.4 919 100.0
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 0.0e+00 1676.0 942 93.5
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 0.0e+00 1583.2 919 91.0
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 0.0e+00 1551.6 930 88.0
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 0.0e+00 1307.4 916 75.8
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 0.0e+00 1275.0 915 74.2
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 0.0e+00 1255.4 916 72.6
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 0.0e+00 1227.2 933 71.9
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 0.0e+00 1208.0 960 70.1
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 0.0e+00 1183.3 918 71.0
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 0.0e+00 1177.2 961 69.6
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 0.0e+00 1166.0 945 69.6
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 0.0e+00 1129.0 921 67.8
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 6.3e-312 1074.7 959 62.6
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 1.8e-309 1065.8 953 63.2
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 5.1e-304 1047.7 965 60.4
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 8.7e-304 1047.0 966 61.2
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 5.6e-303 1044.3 957 61.1
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 2.7e-297 1025.4 958 60.6
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 7.9e-297 1023.8 934 61.7
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 7.4e-295 1017.3 964 60.5
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 3.1e-293 1011.9 974 58.8
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 1.4e-290 1003.0 966 58.8
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 9.6e-287 990.3 961 59.5
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 5.0e-283 978.0 963 58.2
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 2.1e-281 972.6 958 58.2
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 3.0e-280 968.8 968 57.5
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 6.7e-280 967.6 862 62.5
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 2.2e-278 962.6 966 56.9
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 3.7e-278 961.8 969 57.4
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 1.4e-277 959.9 961 57.5
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 4.5e-276 954.9 961 57.8
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 2.5e-274 949.1 961 56.0
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.0e-272 943.7 1014 55.2
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.4e-272 943.3 1014 55.7
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 3.0e-272 942.2 921 59.0
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 6.7e-272 941.0 958 57.1
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 1.5e-271 939.9 1013 55.4
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 3.3e-271 938.7 962 56.1
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 3.3e-271 938.7 962 56.1
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 1.3e-270 936.8 962 56.1
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 8.2e-270 934.1 1038 53.6
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 2.4e-269 932.6 1014 54.8
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 2.2e-267 926.0 1037 54.0
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 3.6e-265 918.7 945 56.8
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 4.7e-265 918.3 962 54.6
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 3.7e-262 908.7 898 57.5
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 2.0e-260 902.9 858 59.8
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 3.8e-259 898.7 965 53.9
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 1.6e-257 893.3 964 55.0
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 6.8e-248 861.3 774 60.9
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 1.3e-246 857.1 1003 50.6
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 4.1e-245 852.0 983 52.1
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 1.0e-243 847.4 858 57.5
arahy.Tifrunner.gnm1.ann1.L6Y1E3 Arachis hypogaea HOM05D003625 ORTHO05D004382 1.1e-242 844.0 592 75.3
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.9e-242 843.2 968 52.0
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 1.4e-237 827.0 855 56.3
arahy.Tifrunner.gnm1.ann1.TJRY6P Arachis hypogaea HOM05D003625 ORTHO05D004382 3.1e-237 825.9 623 71.1
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 8.6e-235 817.8 566 76.1
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 2.3e-232 809.7 903 53.8
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.0e-227 794.3 972 50.9
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 4.3e-226 788.9 1090 47.8
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 1.6e-217 760.4 984 48.5
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 3.1e-216 756.1 1014 46.9
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 8.9e-216 754.6 970 47.9
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 2.2e-214 750.0 961 48.0
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 3.5e-212 742.7 967 47.7
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 6.0e-212 741.9 968 47.1
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 1.1e-210 737.6 969 47.3
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 1.5e-210 737.3 773 56.1
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 4.3e-210 735.7 998 47.0
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 5.6e-210 735.3 945 49.3
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 6.8e-208 728.4 836 52.8
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 6.4e-206 721.8 805 54.7
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 8.4e-206 721.5 934 46.9
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 1.1e-205 721.1 929 47.9
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 2.7e-204 716.5 968 46.8
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 6.6e-203 711.8 976 45.1
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 3.8e-198 696.0 1033 45.5
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 7.3e-194 681.8 1004 43.1
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 6.2e-193 678.7 1007 42.8
Psat5g051000 Pisum sativum HOM05D003625 ORTHO05D004382 1.8e-192 677.2 487 74.3
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 2.4e-192 676.8 1049 42.5
Haze_24021 Corylus avellana HOM05D003625 ORTHO05D004382 5.8e-191 672.2 563 67.0
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 1.5e-186 657.5 974 43.2
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 5.6e-186 655.6 955 44.5
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 3.7e-185 652.9 943 45.1
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 3.1e-184 649.8 915 44.6
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 3.2e-181 639.8 919 45.3
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 5.1e-179 632.5 991 41.5
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 1.3e-177 627.9 921 44.1
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 6.9e-176 622.1 908 43.1
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.5e-175 620.9 952 42.9
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 1.5e-175 620.9 931 43.3
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 5.5e-173 612.5 960 42.7
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 1.3e-171 607.8 939 42.7
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 6.7e-171 605.5 932 44.3
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 2.2e-169 600.5 928 43.1
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 3.7e-169 599.7 928 43.0
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 3.7e-169 599.7 928 43.0
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 6.3e-169 599.0 934 42.3
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 1.1e-168 598.2 936 42.7
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 1.4e-168 597.8 936 42.8
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 3.1e-168 596.7 931 42.9
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 4.1e-168 596.3 941 43.0
ClCG03G001700 Citrullus lanatus HOM05D003625 ORTHO05D004382 5.3e-168 595.9 591 57.2
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 6.9e-168 595.5 934 42.8
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 5.9e-167 592.4 934 42.8
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 1.3e-166 591.3 999 40.3
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 2.1e-164 583.9 978 41.1
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 1.3e-153 548.1 850 44.0
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 6.3e-145 519.2 929 38.3
AUR62034599 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.3e-142 511.5 703 46.8
TPR.G34306 Trifolium pratense HOM05D003625 ORTHO05D004382 1.8e-131 474.6 334 75.7
Atru.chr5.1298 Acer truncatum HOM05D003625 ORTHO05D004382 1.9e-125 454.5 521 50.5
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 3.6e-124 450.3 1024 33.4
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 6.1e-124 449.5 954 35.6
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 2.3e-123 447.6 383 64.0
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 5.2e-123 446.4 781 39.4
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 4.5e-119 433.3 772 39.4
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 5.0e-118 429.9 784 38.1
CARHR251520 Cardamine hirsuta HOM05D003625 ORTHO05D004382 3.3e-117 427.2 553 47.2
TPR.G40473 Trifolium pratense HOM05D003625 ORTHO05D004382 2.1e-116 424.5 261 82.8
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 1.8e-115 421.4 808 37.6
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 1.7e-113 414.8 761 39.0
HPP92_011331 Vanilla planifolia HOM05D003625 ORTHO05D004382 5.0e-110 403.3 523 45.9
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 1.1e-109 402.1 806 36.8
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 1.9e-109 401.4 441 55.3
TPR.G34304 Trifolium pratense HOM05D003625 ORTHO05D004382 1.4e-107 395.2 380 59.7
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 3.7e-105 387.1 984 32.2
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 1.0e-102 379.0 1007 31.8
BolC2t10009H Brassica oleracea HOM05D003625 ORTHO05D004382 4.7e-100 370.2 550 42.0
arahy.Tifrunner.gnm1.ann1.AN8C0D Arachis hypogaea HOM05D003625 ORTHO05D004382 8.9e-99 365.9 366 59.3
arahy.Tifrunner.gnm1.ann1.DI3WFZ Arachis hypogaea HOM05D003625 ORTHO05D004382 1.2e-98 365.5 364 59.3
BcaB05g23686 Brassica carinata HOM05D003625 ORTHO05D004382 1.0e-94 352.4 736 36.7
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 4.2e-88 330.5 624 39.6
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.5e-87 327.4 1047 27.9
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 4.0e-83 313.9 1024 30.0
Sc17g0003670 Simmondsia chinensis HOM05D003625 ORTHO05D004382 7.1e-80 303.1 286 58.4
Prupe.8G267900 Prunus persica HOM05D003625 ORTHO05D004382 7.8e-79 299.7 344 52.6
Haze_24022 Corylus avellana HOM05D003625 ORTHO05D004382 4.9e-73 280.4 480 40.0
CSS0019256 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.4e-72 278.9 268 58.2
Ca_31206_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 6.7e-70 270.0 213 72.3
SEGI_20946 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 3.3e-69 267.7 681 32.7
Sc17g0003660 Simmondsia chinensis HOM05D003625 ORTHO05D004382 3.2e-64 251.1 236 56.8
CSS0041154 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 7.7e-50 203.4 269 51.7
HanXRQChr12g0370811 Helianthus annuus HOM05D003625 ORTHO05D004382 1.0e-49 203.0 377 38.2
AUR62034492 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.4e-46 192.6 186 57.0
Sc17g0003680 Simmondsia chinensis HOM05D003625 ORTHO05D004382 2.3e-46 191.8 341 39.9
CARHR251510 Cardamine hirsuta HOM05D003625 ORTHO05D004382 7.7e-42 176.8 317 41.0
Hma1.2p1_0358F.1_g134790 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 9.4e-40 169.9 229 47.6
QL12p023546 Quercus lobata HOM05D003625 ORTHO05D004382 4.7e-39 167.5 568 30.3
CSS0039297 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 7.0e-35 153.7 210 45.2
SEGI_15323 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 1.2e-34 152.9 184 48.4
Hma1.2p1_0111F.1_g053430 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.0e-34 152.1 147 53.7
QL01p033556 Quercus lobata HOM05D003625 ORTHO05D004382 1.7e-33 149.1 132 65.9
Lalb_Chr24g0394281 Lupinus albus HOM05D003625 ORTHO05D004382 4.7e-31 141.0 150 53.3
MELO3C022916.2 Cucumis melo HOM05D003625 ORTHO05D004382 5.2e-30 137.5 176 45.5
QL12p023490 Quercus lobata HOM05D003625 ORTHO05D004382 6.7e-30 137.1 218 44.5
TPR.G8723 Trifolium pratense HOM05D000036 ORTHO05D012241 6.7e-30 137.1 81 85.2
QL05p076995 Quercus lobata HOM05D003625 ORTHO05D004382 2.2e-28 132.1 100 72.0
HanXRQChr12g0370771 Helianthus annuus HOM05D003625 ORTHO05D004382 1.1e-27 129.8 190 43.2
TPR.G163 Trifolium pratense HOM05D003625 ORTHO05D004382 3.1e-27 128.3 145 55.2
AUR62036671 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.3e-25 122.9 328 35.4
QL05p076992 Quercus lobata HOM05D003625 ORTHO05D004382 1.0e-22 113.2 92 68.5
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 4.4e-21 107.8 126 50.0
Hma1.2p1_0358F.1_g134800 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.8e-20 105.1 129 44.2
CBR_g32446 Chara braunii HOM05D000019 ORTHO05D000353 3.8e-17 94.7 138 39.9
HPP92_011330 Vanilla planifolia HOM05D003625 ORTHO05D004382 6.5e-17 94.0 173 40.5
SEGI_02434 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 5.5e-16 90.9 72 58.3
Hma1.2p1_3245F.1_g334350 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.1e-15 89.0 116 49.1
CBR_g32447 Chara braunii HOM05D003625 ORTHO05D004382 3.0e-14 85.1 154 35.7
CDE11G0573 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 4.0e-14 84.7 185 31.4
Os05g0188600 Oryza sativa ssp. japonica HOM05D003625 ORTHO05D004382 8.8e-14 83.6 95 44.2
BolC9t54863H Brassica oleracea HOM05D000096 ORTHO05D000045 9.1e-11 73.6 97 40.2
Zm00001eb115530 Zea mays HOM05D003625 ORTHO05D037860 2.0e-10 72.4 91 47.3
Zm00001eb115560 Zea mays HOM05D003625 ORTHO05D037860 7.7e-10 70.5 90 46.7
Zm00001eb115510 Zea mays HOM05D003625 ORTHO05D004382 2.9e-09 68.6 175 34.3
HanXRQChr01g0002901 Helianthus annuus HOM05D003625 ORTHO05D004382 6.6e-09 67.4 101 42.6
arahy.Tifrunner.gnm1.ann1.385P84 Arachis hypogaea HOM05D000055 ORTHO05D001675 2.8e-07 62.0 44 75.0
arahy.Tifrunner.gnm1.ann1.0NG2AS Arachis hypogaea HOM05D003117 ORTHO05D001675 3.0e-06 58.5 49 63.3
HanXRQChr02g0048981 Helianthus annuus HOM05D003625 ORTHO05D004382 5.2e-06 57.8 103 37.9


User provided reference genes

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