Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G295600 Glycine max HOM05D004354 ORTHO05D005409 0.0e+00 1156.4 571 100.0
Glyma.12G205300 Glycine max HOM05D004354 ORTHO05D005409 0.0e+00 1123.2 571 96.8
Phvul.005G102100 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 0.0e+00 1083.9 571 93.0
VMungo1080G0203 Vigna mungo HOM05D004354 ORTHO05D005409 0.0e+00 1080.5 571 93.0
arahy.Tifrunner.gnm1.ann1.5TEV2E Arachis hypogaea HOM05D004354 ORTHO05D005409 1.3e-294 1015.8 587 84.2
Lj3g0011593 Lotus japonicus HOM05D004354 ORTHO05D005409 1.3e-294 1015.8 571 87.6
arahy.Tifrunner.gnm1.ann1.SG72Z3 Arachis hypogaea HOM05D004354 ORTHO05D005409 7.3e-293 1010.0 603 82.1
Cfa014637 Carpinus fangiana HOM05D004354 ORTHO05D005409 3.8e-289 997.7 557 85.3
Ca_09445_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 2.4e-288 995.0 571 84.2
Manes.13G144800 Manihot esculenta HOM05D004354 ORTHO05D005409 1.7e-286 988.8 571 82.7
QL08p039658 Quercus lobata HOM05D004354 ORTHO05D005409 3.9e-286 987.6 556 84.2
Thecc.02G182400 Theobroma cacao HOM05D004354 ORTHO05D005409 5.6e-285 983.8 571 82.3
CiPaw.03G179000 Carya illinoinensis HOM05D004354 ORTHO05D005409 1.6e-284 982.2 557 83.7
Glyma.12G116100 Glycine max HOM05D004354 ORTHO05D005409 1.6e-284 982.2 570 83.7
Lj3g0017215 Lotus japonicus HOM05D004354 ORTHO05D005409 2.1e-284 981.9 570 83.5
Prupe.3G139300 Prunus persica HOM05D004354 ORTHO05D005409 2.8e-284 981.5 562 83.1
Medtr4g078525 Medicago truncatula HOM05D004354 ORTHO05D005409 3.6e-284 981.1 570 83.0
COL.COLO4_05947 Corchorus olitorius HOM05D004354 ORTHO05D005409 6.2e-284 980.3 571 82.3
Ca_18937_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 1.1e-283 979.5 570 82.5
Glyma.06G290800 Glycine max HOM05D004354 ORTHO05D005409 2.4e-283 978.4 570 83.0
Ciclev10014745m.g Citrus clementina HOM05D004354 ORTHO05D005409 5.3e-283 977.2 574 82.8
Gohir.A03G155600 Gossypium hirsutum HOM05D004354 ORTHO05D005409 4.4e-282 974.2 571 81.6
Gorai.005G200400 Gossypium raimondii HOM05D004354 ORTHO05D005409 8.4e-281 969.9 571 81.3
Gohir.D02G178700 Gossypium hirsutum HOM05D004354 ORTHO05D005409 1.1e-280 969.5 571 81.3
Dinv04814 Davidia involucrata HOM05D004354 ORTHO05D005409 1.4e-280 969.1 554 82.5
Potri.017G012600 Populus trichocarpa HOM05D004354 ORTHO05D005409 3.5e-279 964.5 558 82.4
Lalb_Chr19g0135191 Lupinus albus HOM05D004354 ORTHO05D005409 4.6e-279 964.1 567 82.4
Phvul.011G119730 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 6.0e-279 963.8 567 82.2
RcHm_v2.0_Chr2g0127681 Rosa chinensis HOM05D004354 ORTHO05D005409 6.6e-278 960.3 550 82.9
CSS0014582 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 8.7e-278 959.9 555 80.7
Cc05_g07440 Coffea canephora HOM05D004354 ORTHO05D005409 8.7e-278 959.9 558 81.2
Dinv13394 Davidia involucrata HOM05D004354 ORTHO05D005409 8.7e-278 959.9 562 80.8
PGR142G0821 Punica granatum HOM05D004354 ORTHO05D005409 1.9e-277 958.7 560 82.0
TPR.G2846 Trifolium pratense HOM05D004354 ORTHO05D005409 3.3e-277 958.0 584 80.0
GSVIVG01020571001 Vitis vinifera HOM05D004354 ORTHO05D005409 9.6e-277 956.4 558 81.5
Psat7g168720 Pisum sativum HOM05D004354 ORTHO05D005409 8.1e-276 953.4 572 80.9
arahy.Tifrunner.gnm1.ann1.6AZK3P Arachis hypogaea HOM05D004354 ORTHO05D005409 5.3e-275 950.7 571 82.5
arahy.Tifrunner.gnm1.ann1.7S1AZB Arachis hypogaea HOM05D004354 ORTHO05D005409 1.2e-274 949.5 571 82.3
Eucgr.K01043 Eucalyptus grandis HOM05D004354 ORTHO05D005409 1.5e-274 949.1 571 80.0
Rhsim06G0139400 Rhododendron simsii HOM05D004354 ORTHO05D005409 2.6e-274 948.3 535 83.0
TWI23G0225 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 3.4e-274 948.0 571 79.0
CANSAT64G2319 Cannabis sativa HOM05D004354 ORTHO05D005409 1.7e-273 945.7 582 79.2
FvH4_6g26490 Fragaria vesca HOM05D004354 ORTHO05D005409 2.9e-273 944.9 534 83.7
Lalb_Chr03g0029541 Lupinus albus HOM05D004354 ORTHO05D005409 2.9e-273 944.9 567 80.1
Potri.007G139300 Populus trichocarpa HOM05D004354 ORTHO05D005409 2.9e-273 944.9 558 81.5
Sopen12g001470 Solanum pennellii HOM05D004354 ORTHO05D005409 4.9e-273 944.1 571 78.6
FAN05G5576 Fragaria x ananassa HOM05D004354 ORTHO05D005409 8.4e-273 943.3 562 80.6
MD09G1244500 Malus domestica HOM05D004354 ORTHO05D005409 1.4e-272 942.6 551 81.1
Hma1.2p1_0002F.1_g002080 Hydrangea macrophylla HOM05D004354 ORTHO05D005409 2.4e-272 941.8 562 79.7
MD17G1236500 Malus domestica HOM05D004354 ORTHO05D005409 1.2e-271 939.5 551 81.3
Solyc12g005470.2 Solanum lycopersicum HOM05D004354 ORTHO05D005409 2.1e-271 938.7 571 78.6
FAN02G3736 Fragaria x ananassa HOM05D004354 ORTHO05D005409 3.0e-270 934.9 558 79.9
CSS0000262 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 6.7e-270 933.7 555 78.7
MELO3C013588.2 Cucumis melo HOM05D004354 ORTHO05D005409 1.1e-269 932.9 549 81.8
CsaV3_6G015220 Cucumis sativus L. HOM05D004354 ORTHO05D005409 5.6e-269 930.6 540 82.6
Sopen07g027820 Solanum pennellii HOM05D004354 ORTHO05D005409 9.6e-269 929.9 557 79.0
Solyc07g053850.3 Solanum lycopersicum HOM05D004354 ORTHO05D005409 2.1e-268 928.7 557 78.8
Lj1A714G27 Lonicera japonica HOM05D004354 ORTHO05D005409 3.7e-268 927.9 556 79.0
PGSC0003DMG400032816 Solanum tuberosum HOM05D004354 ORTHO05D005409 3.7e-268 927.9 558 78.5
Actinidia11091 Actinidia chinensis HOM05D004354 ORTHO05D005409 6.2e-268 927.2 523 83.0
Lalb_Chr01g0005151 Lupinus albus HOM05D004354 ORTHO05D005409 2.0e-266 922.2 567 79.5
MSTRG.6802 Avicennia marina HOM05D004354 ORTHO05D005409 5.8e-266 920.6 554 78.3
Haze_13201 Corylus avellana HOM05D004354 ORTHO05D005409 3.8e-265 917.9 582 77.7
Aqoxy1G02375 Aquilegia oxysepala HOM05D004354 ORTHO05D005409 2.5e-264 915.2 553 79.0
DCAR_009753 Daucus carota HOM05D004354 ORTHO05D005409 4.2e-264 914.4 560 77.7
Sc21g0003070 Simmondsia chinensis HOM05D004354 ORTHO05D005409 1.6e-263 912.5 534 80.7
Sed0026522 Sechium edule HOM05D004354 ORTHO05D005409 2.7e-263 911.8 560 79.3
THA.LOC104804057 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 7.9e-263 910.2 555 76.8
Lsat_1_v5_gn_4_66820 Lactuca sativa HOM05D004354 ORTHO05D005409 1.0e-262 909.8 538 79.6
Cpa.g.sc83.63 Carica papaya HOM05D004354 ORTHO05D005409 3.0e-262 908.3 570 77.7
Aa31LG8G17560 Aethionema arabicum HOM05D004354 ORTHO05D005409 1.3e-260 902.9 556 76.6
TWI59G0686 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 1.6e-260 902.5 571 75.8
Thhalv10024798m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 2.1e-260 902.1 555 76.2
Carub.0007s1237 Capsella rubella HOM05D004354 ORTHO05D005409 3.7e-260 901.4 555 76.0
Oeu036067.1 Olea europaea HOM05D004354 ORTHO05D005409 1.1e-259 899.8 552 76.8
Nitab4.5_0001184g0100 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.2e-258 896.3 557 77.2
CARHR236110 Cardamine hirsuta HOM05D004354 ORTHO05D005409 4.5e-258 894.4 559 75.8
PSO541G1897 Papaver somniferum HOM05D004354 ORTHO05D005409 4.5e-258 894.4 538 78.3
TAR626G1453 Trochodendron aralioides HOM05D004354 ORTHO05D005409 5.8e-258 894.0 558 78.1
EL10Ac9g20792 Beta vulgaris HOM05D004354 ORTHO05D005409 7.6e-258 893.6 516 81.6
PSO675G5152 Papaver somniferum HOM05D004354 ORTHO05D005409 7.6e-258 893.6 538 78.1
AT4G28370 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 1.0e-257 893.3 562 74.4
Aa31LG2G22230 Aethionema arabicum HOM05D004354 ORTHO05D005409 1.1e-256 889.8 555 76.0
Thhalv10002192m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 1.4e-256 889.4 555 75.3
AL7G24220 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 3.5e-255 884.8 555 74.4
vmacro12326 Vaccinium macrocarpon HOM05D004354 ORTHO05D005409 3.5e-255 884.8 531 78.9
AL3G53730 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 6.1e-255 884.0 532 77.4
Carub.0003s3517 Capsella rubella HOM05D004354 ORTHO05D005409 2.3e-254 882.1 560 74.1
ECA234G2175 Erigeron canadensis HOM05D004354 ORTHO05D005409 3.9e-254 881.3 535 77.9
AT2G20650 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 3.3e-253 878.2 532 77.1
Sp3g33900 Schrenkiella parvula HOM05D004354 ORTHO05D005409 7.4e-253 877.1 534 77.2
BcaC07g38328 Brassica carinata HOM05D004354 ORTHO05D005409 1.6e-252 875.9 565 73.8
C08p10830 Brassica napus HOM05D004354 ORTHO05D005409 1.6e-252 875.9 565 73.8
BolC8t48758H Brassica oleracea HOM05D004354 ORTHO05D005409 2.8e-252 875.2 565 73.6
BraA08t33968Z Brassica rapa HOM05D004354 ORTHO05D005409 2.8e-252 875.2 565 74.0
BcaB03g12570 Brassica carinata HOM05D004354 ORTHO05D005409 8.2e-252 873.6 565 73.5
A08p20090 Brassica napus HOM05D004354 ORTHO05D005409 1.4e-251 872.8 565 74.0
HanXRQChr05g0143301 Helianthus annuus HOM05D004354 ORTHO05D005409 9.0e-251 870.2 555 74.1
Hund01030 Selenicereus undatus HOM05D004354 ORTHO05D005409 2.6e-250 868.6 564 74.5
BraA07t27805Z Brassica rapa HOM05D004354 ORTHO05D005409 7.7e-250 867.1 561 74.5
BcaC06g36756 Brassica carinata HOM05D004354 ORTHO05D005409 2.9e-249 865.1 553 74.9
C07p00280 Brassica napus HOM05D004354 ORTHO05D005409 2.9e-249 865.1 553 75.0
BolC7t40478H Brassica oleracea HOM05D004354 ORTHO05D005409 2.9e-249 865.1 553 74.9
BcaB03g16858 Brassica carinata HOM05D004354 ORTHO05D005409 1.1e-248 863.2 562 73.5
Migut.M00279 Erythranthe guttata HOM05D004354 ORTHO05D005409 1.4e-248 862.8 535 74.0
MBI18_g19626_MAGBIO Magnolia biondii HOM05D004354 ORTHO05D005409 5.5e-248 860.9 567 73.5
FAN14G3021 Fragaria x ananassa HOM05D004354 ORTHO05D005409 1.2e-247 859.8 535 78.7
THA.LOC104824696 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 7.4e-245 850.5 571 72.5
Peaxi162Scf00008g00611 Petunia axillaris HOM05D004354 ORTHO05D005409 2.4e-243 845.5 571 71.8
FAN09G2589 Fragaria x ananassa HOM05D004354 ORTHO05D005409 2.6e-242 842.0 544 76.7
Nn1g06483 Nelumbo nucifera HOM05D004354 ORTHO05D005409 3.4e-242 841.6 528 76.7
Sed0007610 Sechium edule HOM05D004354 ORTHO05D005409 3.4e-242 841.6 495 81.2
CARHR111300 Cardamine hirsuta HOM05D004354 ORTHO05D005409 2.2e-241 839.0 516 77.1
A07p00120 Brassica napus HOM05D004354 ORTHO05D005409 8.5e-241 837.0 542 74.4
ATR0763G074 Amborella trichopoda HOM05D004354 ORTHO05D005409 2.0e-237 825.9 517 75.0
Sp7g26330 Schrenkiella parvula HOM05D004354 ORTHO05D005409 1.2e-234 816.6 560 70.2
PGSC0003DMG400013734 Solanum tuberosum HOM05D004354 ORTHO05D005409 1.1e-232 810.1 555 71.9
ClCG02G017760 Citrullus lanatus HOM05D004354 ORTHO05D005409 1.0e-230 803.5 517 77.0
Peaxi162Scf01415g00030 Petunia axillaris HOM05D004354 ORTHO05D005409 6.5e-225 784.3 541 69.9
Nitab4.5_0000638g0120 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.4e-222 776.5 518 71.8
Nitab4.5_0006194g0010 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.4e-219 766.5 557 68.6
SGA_v2.0_scaffold70G23519 Striga asiatica HOM05D004354 ORTHO05D005409 3.6e-215 751.9 567 65.6
unitig_22.g5828 Utricularia gibba HOM05D004354 ORTHO05D005409 1.0e-214 750.4 557 65.7
Pp3c21_16510 Physcomitrium patens HOM05D004354 ORTHO05D005409 9.8e-205 717.2 603 61.7
Nitab4.5_0001752g0070 Nicotiana tabacum HOM05D004354 ORTHO05D005409 3.7e-204 715.3 481 71.5
Pp3c18_8870 Physcomitrium patens HOM05D004354 ORTHO05D005409 8.3e-204 714.1 591 61.8
Mapoly0093s0076 Marchantia polymorpha HOM05D004354 ORTHO05D005409 2.5e-200 702.6 574 62.4
Zm00001eb322160 Zea mays HOM05D004354 ORTHO05D005409 1.2e-194 683.7 416 79.3
SMO351G0175 Selaginella moellendorffii HOM05D004354 ORTHO05D005409 4.6e-194 681.8 586 59.2
Actinidia11016 Actinidia chinensis HOM05D004354 ORTHO05D005409 2.8e-143 513.1 338 73.4
CDE05G0895 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 1.7e-140 503.8 278 84.5
Atru.chr6.2897 Acer truncatum HOM05D004354 ORTHO05D005409 6.1e-130 468.8 263 87.5
AUR62033734 Chenopodium quinoa HOM05D004354 ORTHO05D005409 2.3e-129 466.8 353 66.3
TAR627G0070 Trochodendron aralioides HOM05D004354 ORTHO05D005409 3.9e-129 466.1 319 70.2
CBR_g36920 Chara braunii HOM05D004354 ORTHO05D005409 1.1e-126 458.0 530 50.6
HPP92_012418 Vanilla planifolia HOM05D004354 ORTHO05D005409 2.0e-120 437.2 340 64.4
AUR62033735 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.2e-114 417.9 294 70.1
SEGI_11328 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 5.2e-105 386.0 217 76.0
AUR62038896 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.3e-100 371.3 217 81.1
Os07g0501900 Oryza sativa ssp. japonica HOM05D004354 ORTHO05D005409 3.8e-92 343.2 272 63.6
SGA_v2.0_scaffold34G13945 Striga asiatica HOM05D004354 ORTHO05D005409 1.5e-91 341.3 294 58.5
AUR62038895 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.1e-86 325.1 251 66.5
PRCOL_00005121 Prasinoderma coloniale HOM05D000722 ORTHO05D000590 8.9e-81 305.4 571 34.0
SGA_v2.0_scaffold4316G54468 Striga asiatica HOM05D004354 ORTHO05D005409 7.0e-78 295.8 198 73.2
CDE05G0163 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 2.2e-71 274.2 201 67.7
SEGI_25482 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 5.2e-65 253.1 145 75.2
Cre08.g381900 Chlamydomonas reinhardtii HOM05D004354 ORTHO05D005409 1.4e-62 245.0 455 32.3
MCO03G390 Micromonas commoda HOM05D004354 ORTHO05D005409 2.4e-54 217.6 228 47.4
Atru.chr6.2898 Acer truncatum HOM05D004354 ORTHO05D005409 4.9e-47 193.4 136 66.2
LjContig00564g0000671 Lotus japonicus HOM05D000084 ORTHO05D000363 4.6e-37 160.2 129 65.1
arahy.Tifrunner.gnm1.ann1.56HDLZ Arachis hypogaea HOM05D004354 ORTHO05D005409 7.9e-37 159.5 100 75.0
CDE05G2312 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 2.4e-33 147.9 128 53.9
TPR.G10974 Trifolium pratense HOM05D004354 ORTHO05D005409 3.4e-32 144.1 178 46.6
SEGI_31944 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 3.8e-31 140.6 106 61.3
AUR62038894 Chenopodium quinoa HOM05D004354 ORTHO05D005409 5.5e-30 136.7 109 56.9
Glyma.14G107350 Glycine max HOM05D004354 ORTHO05D005409 1.1e-27 129.0 80 80.0
TAR627G0937 Trochodendron aralioides HOM05D004354 ORTHO05D005409 1.7e-23 115.2 54 88.9
SGA_v2.0_scaffold70G23386 Striga asiatica HOM05D004354 ORTHO05D005409 3.2e-22 110.9 117 52.1
Nn1g04142 Nelumbo nucifera HOM05D004354 ORTHO05D005409 2.0e-16 91.7 55 76.4
Ciclev10013591m.g Citrus clementina HOM05D004354 ORTHO05D005409 1.1e-11 75.9 43 79.1
FvH4_1g03410 Fragaria vesca HOM05D012452 ORTHO05D017950 2.9e-07 61.2 55 47.3
FAN19G1771 Fragaria x ananassa HOM05D012452 ORTHO05D017950 2.9e-07 61.2 55 47.3
Potri.001G400600 Populus trichocarpa HOM05D004354 ORTHO05D001065 3.8e-07 60.8 63 38.1
Cfa022079 Carpinus fangiana HOM05D004354 ORTHO05D124722 5.0e-07 60.5 70 35.7
FvH4_1g03372 Fragaria vesca HOM05D012452 ORTHO05D017950 5.0e-07 60.5 55 47.3
FAN23G2234 Fragaria x ananassa HOM05D012452 ORTHO05D017950 5.0e-07 60.5 55 47.3
FAN28G2875 Fragaria x ananassa HOM05D012452 ORTHO05D017950 5.0e-07 60.5 55 47.3
FAN08G0929 Fragaria x ananassa HOM05D007878 ORTHO05D010022 8.5e-07 59.7 57 43.9
Cpa.g.sc17.216 Carica papaya HOM05D000082 ORTHO05D000038 1.4e-06 58.9 161 26.7
FvH4_6g11150 Fragaria vesca HOM05D009507 ORTHO05D022560 1.4e-06 58.9 77 29.9
FAN14G0535 Fragaria x ananassa HOM05D009507 ORTHO05D022560 1.4e-06 58.9 77 29.9
Cpa.g.c33379.2 Carica papaya HOM05D000082 ORTHO05D000038 2.5e-06 58.2 161 26.7
FAN27G2732 Fragaria x ananassa HOM05D000082 ORTHO05D000038 3.2e-06 57.8 76 30.3
MELO3C021991.2 Cucumis melo HOM05D000082 ORTHO05D000038 4.2e-06 57.4 55 32.7
Sc04g0001090 Simmondsia chinensis HOM05D000082 ORTHO05D000038 5.5e-06 57.0 61 39.3
Peaxi162Scf00038g02344 Petunia axillaris HOM05D000440 ORTHO05D008998 7.2e-06 56.6 88 33.0
Haze_14519 Corylus avellana HOM05D000082 ORTHO05D000038 9.4e-06 56.2 57 35.1
Gorai.006G016300 Gossypium raimondii HOM05D000082 ORTHO05D000038 9.4e-06 56.2 51 39.2
MBI07_g28241_MAGBIO Magnolia biondii HOM05D000341 ORTHO05D001197 9.4e-06 56.2 54 38.9
Nn1g06293 Nelumbo nucifera HOM05D000086 ORTHO05D005495 9.4e-06 56.2 55 38.2


User provided reference genes

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