Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G218051 Glycine max HOM05D003302 ORTHO05D003785 1.3e-105 386.3 190 100.0
Glyma.15G094350 Glycine max HOM05D003302 ORTHO05D003785 3.5e-98 361.7 191 94.2
Ca_00544_v3 Cicer arietinum L. HOM05D003302 ORTHO05D003785 2.1e-95 352.4 191 90.6
VMungo0540G2182 Vigna mungo HOM05D003302 ORTHO05D003785 3.4e-93 345.1 191 89.5
arahy.Tifrunner.gnm1.ann1.JNH5N4 Arachis hypogaea HOM05D003302 ORTHO05D003785 4.4e-93 344.7 191 89.5
arahy.Tifrunner.gnm1.ann1.VBQQ6F Arachis hypogaea HOM05D003302 ORTHO05D003785 4.4e-93 344.7 191 89.5
Psat1g190600 Pisum sativum HOM05D003302 ORTHO05D003785 7.5e-93 344.0 191 88.0
Lalb_Chr15g0086841 Lupinus albus HOM05D003302 ORTHO05D003785 3.6e-87 325.1 200 81.5
Potri.004G132450 Populus trichocarpa HOM05D003302 ORTHO05D003785 9.8e-85 317.0 188 81.4
CANSAT35G0225 Cannabis sativa HOM05D003302 ORTHO05D003785 4.9e-84 314.7 184 83.7
Sabra04G0085500 Salix brachista HOM05D003302 ORTHO05D003785 6.4e-84 314.3 188 79.8
Dinv30741 Davidia involucrata HOM05D003302 ORTHO05D003785 1.9e-83 312.8 188 81.4
Gohir.D11G331550 Gossypium hirsutum HOM05D003302 ORTHO05D003785 5.4e-83 311.2 186 81.7
Gohir.A11G314450 Gossypium hirsutum HOM05D003302 ORTHO05D003785 9.2e-83 310.5 186 81.7
COL.COLO4_29330 Corchorus olitorius HOM05D003302 ORTHO05D003785 4.6e-82 308.1 182 81.3
Thecc.05G173100 Theobroma cacao HOM05D003302 ORTHO05D003785 6.0e-82 307.8 186 80.6
Manes.17G069108 Manihot esculenta HOM05D003302 ORTHO05D003785 7.8e-82 307.4 188 80.3
Cpa.g.sc166.10 Carica papaya HOM05D003302 ORTHO05D003785 1.0e-81 307.0 176 85.2
Sc05g0006220 Simmondsia chinensis HOM05D003302 ORTHO05D003785 1.7e-81 306.2 180 83.3
Haze_05590 Corylus avellana HOM05D003302 ORTHO05D003785 6.6e-81 304.3 190 78.4
DCAR_003918 Daucus carota HOM05D003302 ORTHO05D003785 3.3e-80 302.0 180 81.7
MD05G1284200 Malus domestica HOM05D003302 ORTHO05D003785 3.3e-80 302.0 188 76.6
Duzib128G1415 Durio zibethinus HOM05D003302 ORTHO05D003785 7.3e-80 300.8 186 79.6
TAR629G3501 Trochodendron aralioides HOM05D003302 ORTHO05D003785 7.3e-80 300.8 184 80.4
Hma1.2p1_0053F.1_g030960 Hydrangea macrophylla HOM05D003302 ORTHO05D003785 1.2e-79 300.1 182 80.2
QL10p038886 Quercus lobata HOM05D003302 ORTHO05D003785 1.6e-79 299.7 184 78.8
Oeu034153.1 Olea europaea HOM05D003302 ORTHO05D003785 2.8e-79 298.9 180 81.7
Cfa000950 Carpinus fangiana HOM05D003302 ORTHO05D003785 3.6e-79 298.5 188 77.7
Lj1P1187T27 Lonicera japonica HOM05D003302 ORTHO05D003785 8.1e-79 297.4 184 78.8
Atru.chr10.1237 Acer truncatum HOM05D003302 ORTHO05D003785 1.4e-78 296.6 187 76.5
Nn3g20766 Nelumbo nucifera HOM05D003302 ORTHO05D003785 1.8e-78 296.2 187 76.5
CiPaw.09G124000 Carya illinoinensis HOM05D003302 ORTHO05D003785 2.3e-78 295.8 183 80.3
AL1G43900 Arabidopsis lyrata HOM05D003302 ORTHO05D003785 6.8e-78 294.3 188 77.7
PGR083G1399 Punica granatum HOM05D003302 ORTHO05D003785 6.8e-78 294.3 174 82.8
Aqoxy1G01714 Aquilegia oxysepala HOM05D003302 ORTHO05D003785 8.9e-78 293.9 182 78.0
BraA09t39172Z Brassica rapa HOM05D003302 ORTHO05D003785 2.0e-77 292.7 188 76.6
MD10G1262500 Malus domestica HOM05D003302 ORTHO05D003785 3.4e-77 292.0 184 76.1
Nitab4.5_0000165g0160 Nicotiana tabacum HOM05D003302 ORTHO05D003785 4.4e-77 291.6 171 83.6
Sopen01g054090 Solanum pennellii HOM05D003302 ORTHO05D003785 4.4e-77 291.6 190 75.8
Solyc01g112025.1 Solanum lycopersicum HOM05D003302 ORTHO05D003785 5.8e-77 291.2 171 83.0
TWI38G0102 Tripterygium wilfordii HOM05D003302 ORTHO05D003785 7.5e-77 290.8 188 77.1
BcaC05g27013 Brassica carinata HOM05D003302 ORTHO05D003785 9.8e-77 290.4 188 76.1
C05p28800 Brassica napus HOM05D003302 ORTHO05D003785 9.8e-77 290.4 188 76.1
BolC5t31597H Brassica oleracea HOM05D003302 ORTHO05D003785 9.8e-77 290.4 188 76.1
CAN.G1235.21 Capsicum annuum HOM05D003302 ORTHO05D003785 1.7e-76 289.7 190 76.8
CARHR029380 Cardamine hirsuta HOM05D003302 ORTHO05D003785 1.7e-76 289.7 188 76.1
FAN21G1953 Fragaria x ananassa HOM05D003302 ORTHO05D003785 1.7e-76 289.7 188 75.0
A09p36490 Brassica napus HOM05D003302 ORTHO05D003785 2.2e-76 289.3 188 75.5
FvH4_3g05620 Fragaria vesca HOM05D003302 ORTHO05D003785 2.2e-76 289.3 188 75.0
FAN11G3285 Fragaria x ananassa HOM05D003302 ORTHO05D003785 2.2e-76 289.3 188 75.0
THA.LOC104820647 Tarenaya hassleriana HOM05D003302 ORTHO05D003785 2.2e-76 289.3 171 81.9
RcHm_v2.0_Chr5g0014061 Rosa chinensis HOM05D003302 ORTHO05D003785 3.7e-76 288.5 188 73.9
Sp1g25890 Schrenkiella parvula HOM05D003302 ORTHO05D003785 3.7e-76 288.5 188 75.0
Aa31LG6G5650 Aethionema arabicum HOM05D003302 ORTHO05D003785 8.3e-76 287.3 169 82.2
PGSC0003DMG400018655 Solanum tuberosum HOM05D003302 ORTHO05D003785 1.1e-75 287.0 190 75.8
Nitab4.5_0011942g0010 Nicotiana tabacum HOM05D003302 ORTHO05D003785 1.4e-75 286.6 190 75.8
MBI07_g26352_MAGBIO Magnolia biondii HOM05D003302 ORTHO05D003785 1.9e-75 286.2 171 81.3
AT1G30010 Arabidopsis thaliana HOM05D003302 ORTHO05D003785 5.4e-75 284.6 188 74.5
unitig_32.g11443 Utricularia gibba HOM05D003302 ORTHO05D003785 2.1e-74 282.7 170 80.0
HPP92_002850 Vanilla planifolia HOM05D003302 ORTHO05D003785 2.1e-74 282.7 170 78.8
CsaV3_1G032460 Cucumis sativus L. HOM05D003302 ORTHO05D003785 2.7e-74 282.3 182 75.8
ClCG03G006880 Citrullus lanatus HOM05D003302 ORTHO05D003785 7.8e-74 280.8 182 75.8
MELO3C002733.2 Cucumis melo HOM05D003302 ORTHO05D003785 2.3e-73 279.3 182 75.8
PSO541G5669 Papaver somniferum HOM05D003302 ORTHO05D003785 2.3e-73 279.3 171 78.4
AUR62002753 Chenopodium quinoa HOM05D003302 ORTHO05D003785 3.0e-73 278.9 179 76.5
PSO675G7265 Papaver somniferum HOM05D003302 ORTHO05D003785 5.1e-73 278.1 171 77.8
SHI24871 Sapria himalayana HOM05D003302 ORTHO05D003785 1.5e-72 276.6 171 77.2
SGA_v2.0_scaffold1G00170 Striga asiatica HOM05D003302 ORTHO05D003785 1.9e-72 276.2 182 74.7
AUR62030203 Chenopodium quinoa HOM05D003302 ORTHO05D003785 4.3e-72 275.0 179 74.9
Os12g0407300 Oryza sativa ssp. japonica HOM05D003302 ORTHO05D003785 9.5e-72 273.9 170 77.6
Actinidia19525 Actinidia chinensis HOM05D003302 ORTHO05D003785 3.6e-71 271.9 175 77.1
EL10Ac4g07785 Beta vulgaris HOM05D003302 ORTHO05D003785 3.6e-71 271.9 179 73.7
CDE11G0149 Ceratophyllum demersum HOM05D003302 ORTHO05D003785 3.6e-71 271.9 171 76.6
Ah.09g232620 Amaranthus hybridus HOM05D003302 ORTHO05D003785 1.1e-70 270.4 179 72.6
Zm00001eb006520 Zea mays HOM05D003302 ORTHO05D003785 1.1e-70 270.4 170 76.5
Rhsim13G0194800 Rhododendron simsii HOM05D003302 ORTHO05D003785 1.2e-69 266.9 176 75.6
vmacro03962 Vaccinium macrocarpon HOM05D003302 ORTHO05D003785 2.0e-69 266.2 176 75.0
EL10Ac8g19691 Beta vulgaris HOM05D003302 ORTHO05D003785 9.9e-69 263.8 175 73.7
ATR0064G047 Amborella trichopoda HOM05D003302 ORTHO05D003785 2.2e-68 262.7 190 66.3
HanXRQChr15g0486511 Helianthus annuus HOM05D003302 ORTHO05D003785 3.7e-68 261.9 171 73.7
ECA232G0620 Erigeron canadensis HOM05D003302 ORTHO05D003785 6.4e-68 261.2 184 69.0
Lsat_1_v5_gn_8_116740 Lactuca sativa HOM05D003302 ORTHO05D003785 3.0e-65 252.3 171 69.0
ATR1091G061 Amborella trichopoda HOM05D003302 ORTHO05D003785 9.9e-61 237.3 190 62.6
Actinidia16714 Actinidia chinensis HOM05D003302 ORTHO05D003785 1.2e-58 230.3 183 63.9
SEGI_34960 Sequoiadendron giganteum HOM05D003302 ORTHO05D003785 6.2e-55 218.0 170 62.9
Aqoxy3G02548 Aquilegia oxysepala HOM05D003302 ORTHO05D003785 7.6e-53 211.1 166 62.0
CANSAT11G1544 Cannabis sativa HOM05D003302 ORTHO05D003785 9.9e-53 210.7 190 55.3
Lalb_Chr18g0057931 Lupinus albus HOM05D003302 ORTHO05D003785 9.9e-53 210.7 166 61.4
FAN08G3359 Fragaria x ananassa HOM05D003302 ORTHO05D003785 2.2e-52 209.5 186 57.0
FAN18G0007 Fragaria x ananassa HOM05D003302 ORTHO05D003785 2.2e-52 209.5 186 57.0
Duzib084G0162 Durio zibethinus HOM05D003302 ORTHO05D003785 2.9e-52 209.1 166 61.4
RcHm_v2.0_Chr7g0208021 Rosa chinensis HOM05D003302 ORTHO05D003785 2.9e-52 209.1 186 56.5
arahy.Tifrunner.gnm1.ann1.HY98G0 Arachis hypogaea HOM05D003302 ORTHO05D003785 3.8e-52 208.8 166 60.8
arahy.Tifrunner.gnm1.ann1.K481AV Arachis hypogaea HOM05D003302 ORTHO05D003785 3.8e-52 208.8 166 60.8
FvH4_5g21000 Fragaria vesca HOM05D003302 ORTHO05D003785 3.8e-52 208.8 186 57.0
SEGI_25417 Sequoiadendron giganteum HOM05D003302 ORTHO05D003785 4.9e-52 208.4 186 56.5
ATR0827G173 Amborella trichopoda HOM05D003302 ORTHO05D003785 8.4e-52 207.6 166 61.4
Ca_00809_v3 Cicer arietinum L. HOM05D003302 ORTHO05D003785 8.4e-52 207.6 166 60.2
Glyma.15G129400 Glycine max HOM05D003302 ORTHO05D003785 8.4e-52 207.6 166 59.6
Gohir.A03G002901 Gossypium hirsutum HOM05D003302 ORTHO05D003785 1.1e-51 207.2 166 60.2
Gohir.D03G169466 Gossypium hirsutum HOM05D003302 ORTHO05D003785 1.1e-51 207.2 166 60.2
FAN13G0755 Fragaria x ananassa HOM05D003302 ORTHO05D003785 1.4e-51 206.8 186 56.5
Psat1g168040 Pisum sativum HOM05D003302 ORTHO05D003785 1.4e-51 206.8 166 59.6
TPR.G26325 Trifolium pratense HOM05D003302 ORTHO05D003785 1.4e-51 206.8 166 60.2
Cpa.g.sc29.6 Carica papaya HOM05D003302 ORTHO05D003785 1.9e-51 206.5 166 60.2
QL12p007349 Quercus lobata HOM05D003302 ORTHO05D003785 1.9e-51 206.5 166 59.6
Thecc.03G235300 Theobroma cacao HOM05D003302 ORTHO05D003785 1.9e-51 206.5 166 60.2
TWI60G1391 Tripterygium wilfordii HOM05D003302 ORTHO05D003785 2.4e-51 206.1 166 59.6
Lj8P288T36 Lonicera japonica HOM05D003302 ORTHO05D003785 3.2e-51 205.7 179 55.3
PSO063G6934 Papaver somniferum HOM05D003302 ORTHO05D003785 3.2e-51 205.7 188 55.9
PSO782G0278 Papaver somniferum HOM05D003302 ORTHO05D003785 3.2e-51 205.7 188 55.9
Nn1g00641 Nelumbo nucifera HOM05D003302 ORTHO05D003785 5.4e-51 204.9 166 60.8
COL.COLO4_17129 Corchorus olitorius HOM05D003302 ORTHO05D003785 7.1e-51 204.5 186 55.4
Potri.001G147801 Populus trichocarpa HOM05D003302 ORTHO05D003785 7.1e-51 204.5 166 58.4
Atru.chr6.1790 Acer truncatum HOM05D003302 ORTHO05D003785 9.3e-51 204.1 189 54.0
THA.LOC104798339 Tarenaya hassleriana HOM05D003302 ORTHO05D003785 9.3e-51 204.1 166 58.4
CDE12G0679 Ceratophyllum demersum HOM05D003302 ORTHO05D003785 1.6e-50 203.4 166 60.8
Duzib205G0194 Durio zibethinus HOM05D003302 ORTHO05D003785 1.6e-50 203.4 186 55.9
HPP92_007162 Vanilla planifolia HOM05D003302 ORTHO05D003785 1.6e-50 203.4 188 54.3
CiPaw.12G059400 Carya illinoinensis HOM05D003302 ORTHO05D003785 2.1e-50 203.0 166 58.4
Glyma.09G023300 Glycine max HOM05D003302 ORTHO05D003785 2.1e-50 203.0 166 59.0
PGR142G3064 Punica granatum HOM05D003302 ORTHO05D003785 2.1e-50 203.0 186 54.3
Manes.15G171966 Manihot esculenta HOM05D003302 ORTHO05D003785 2.7e-50 202.6 166 58.4
Os10g0567500 Oryza sativa ssp. japonica HOM05D003302 ORTHO05D003785 3.5e-50 202.2 188 54.8
Potri.003G086801 Populus trichocarpa HOM05D003302 ORTHO05D003785 3.5e-50 202.2 166 57.8
Sabra03G0056500 Salix brachista HOM05D003302 ORTHO05D003785 3.5e-50 202.2 166 58.4
VMungo0540G1460 Vigna mungo HOM05D003302 ORTHO05D003785 3.5e-50 202.2 166 57.2
Prupe.5G048500 Prunus persica HOM05D003302 ORTHO05D003785 4.6e-50 201.8 166 58.4
MSTRG.1965 Avicennia marina HOM05D003302 ORTHO05D003785 6.0e-50 201.4 177 55.9
Cfa012369 Carpinus fangiana HOM05D003302 ORTHO05D003785 7.9e-50 201.1 166 57.8
Haze_08314 Corylus avellana HOM05D003302 ORTHO05D003785 7.9e-50 201.1 166 57.8
Haze_08315 Corylus avellana HOM05D003302 ORTHO05D003785 7.9e-50 201.1 166 57.8
Oeu037876.2 Olea europaea HOM05D003302 ORTHO05D003785 7.9e-50 201.1 166 57.8
Sed0026531 Sechium edule HOM05D003302 ORTHO05D003785 1.0e-49 200.7 166 57.8
Phvul.006G128900 Phaseolus vulgaris HOM05D003302 ORTHO05D003785 1.7e-49 199.9 166 57.8
ClCG09G012410 Citrullus lanatus HOM05D003302 ORTHO05D003785 2.3e-49 199.5 166 57.8
unitig_62.g23447 Utricularia gibba HOM05D003302 ORTHO05D003785 3.9e-49 198.7 176 55.1
unitig_65.g29877 Utricularia gibba HOM05D003302 ORTHO05D003785 3.9e-49 198.7 176 55.1
GSVIVG01023127001 Vitis vinifera HOM05D003302 ORTHO05D003785 3.9e-49 198.7 166 58.4
CsaV3_3G049580 Cucumis sativus L. HOM05D003302 ORTHO05D003785 6.6e-49 198.0 166 57.8
Zm00001eb004560 Zea mays HOM05D003302 ORTHO05D003785 6.6e-49 198.0 195 52.3
Dinv28907 Davidia involucrata HOM05D003302 ORTHO05D003785 8.7e-49 197.6 166 57.2
Sc25g0000590 Simmondsia chinensis HOM05D003302 ORTHO05D003785 8.7e-49 197.6 166 57.2
Zm00001eb210180 Zea mays HOM05D003302 ORTHO05D003785 8.7e-49 197.6 195 52.3
A06p45460 Brassica napus HOM05D003302 ORTHO05D003785 1.9e-48 196.4 166 57.2
BraA06t27414Z Brassica rapa HOM05D003302 ORTHO05D003785 1.9e-48 196.4 166 57.2
Rhsim04G0067200 Rhododendron simsii HOM05D003302 ORTHO05D003785 1.9e-48 196.4 166 55.4
vmacro00359 Vaccinium macrocarpon HOM05D003302 ORTHO05D003785 1.9e-48 196.4 166 55.4
DCAR_005601 Daucus carota HOM05D003302 ORTHO05D003785 2.5e-48 196.1 185 51.4
Aa31LG9G6000 Aethionema arabicum HOM05D003302 ORTHO05D003785 3.3e-48 195.7 166 57.2
MELO3C003368.2 Cucumis melo HOM05D003302 ORTHO05D003785 3.3e-48 195.7 166 57.2
C07p30510 Brassica napus HOM05D003302 ORTHO05D003785 4.3e-48 195.3 166 57.2
BolC7t43592H Brassica oleracea HOM05D003302 ORTHO05D003785 4.3e-48 195.3 166 57.2
Sp2g11710 Schrenkiella parvula HOM05D003302 ORTHO05D003785 5.6e-48 194.9 166 57.2
Lsat_1_v5_gn_4_38500 Lactuca sativa HOM05D003302 ORTHO05D003785 7.3e-48 194.5 166 56.6
CAN.G572.44 Capsicum annuum HOM05D003302 ORTHO05D003785 9.6e-48 194.1 166 57.2
Nitab4.5_0004832g0030 Nicotiana tabacum HOM05D003302 ORTHO05D003785 9.6e-48 194.1 166 57.2
Nitab4.5_0008694g0030 Nicotiana tabacum HOM05D003302 ORTHO05D003785 9.6e-48 194.1 166 57.2
Sopen08g025970 Solanum pennellii HOM05D003302 ORTHO05D003785 9.6e-48 194.1 166 57.2
PGSC0003DMG400001864 Solanum tuberosum HOM05D003302 ORTHO05D003785 9.6e-48 194.1 166 57.2
EL10Ac5g11380 Beta vulgaris HOM05D003302 ORTHO05D003785 1.3e-47 193.7 187 52.4
HanXRQChr16g0522971 Helianthus annuus HOM05D003302 ORTHO05D003785 1.3e-47 193.7 166 55.4
Solyc08g077385.1 Solanum lycopersicum HOM05D003302 ORTHO05D003785 2.1e-47 193.0 166 56.6
AUR62029877 Chenopodium quinoa HOM05D003302 ORTHO05D003785 3.6e-47 192.2 166 54.2
SHI07509 Sapria himalayana HOM05D003302 ORTHO05D003785 4.8e-47 191.8 166 57.2
AL8G11350 Arabidopsis lyrata HOM05D003302 ORTHO05D003785 6.2e-47 191.4 166 55.4
AUR62025829 Chenopodium quinoa HOM05D003302 ORTHO05D003785 6.2e-47 191.4 166 54.2
ECA248G2391 Erigeron canadensis HOM05D003302 ORTHO05D003785 6.2e-47 191.4 166 55.4
AT5G46920 Arabidopsis thaliana HOM05D003302 ORTHO05D003785 8.1e-47 191.0 166 54.8
CAN.G289.41 Capsicum annuum HOM05D003302 ORTHO05D003785 8.1e-47 191.0 166 56.0
Actinidia03397 Actinidia chinensis HOM05D003302 ORTHO05D003785 1.1e-46 190.7 166 54.8
CDE06G1020 Ceratophyllum demersum HOM05D003302 ORTHO05D003785 5.3e-46 188.3 151 61.6
HanXRQChr07g0188531 Helianthus annuus HOM05D003302 ORTHO05D003785 6.9e-46 188.0 166 53.6
CAN.G572.50 Capsicum annuum HOM05D003302 ORTHO05D003785 9.0e-46 187.6 166 56.0
TPR.G26652 Trifolium pratense HOM05D003302 ORTHO05D003785 2.6e-45 186.0 98 94.9
TAR375G0955 Trochodendron aralioides HOM05D003302 ORTHO05D003785 4.2e-43 178.7 145 61.4
CAN.G15328.1 Capsicum annuum HOM05D003302 ORTHO05D003785 5.1e-41 171.8 180 50.0
Nn6g33801 Nelumbo nucifera HOM05D003302 ORTHO05D003785 4.2e-35 152.1 113 64.6
ATR0665G600 Amborella trichopoda HOM05D003302 ORTHO05D003785 9.7e-24 114.4 96 58.3
FAN04G1622 Fragaria x ananassa HOM05D003302 ORTHO05D003785 1.1e-19 100.9 64 71.9
FAN04G2497 Fragaria x ananassa HOM05D003302 ORTHO05D003785 3.3e-16 89.4 97 46.4
TAR383G0221 Trochodendron aralioides HOM05D003302 ORTHO05D003785 9.1e-14 81.3 77 50.6
Rhsim11G0009600 Rhododendron simsii HOM05D003302 ORTHO05D003785 4.7e-10 68.9 70 42.9
AagrBONN_evm.TU.Sc2ySwM_344.5534 Anthoceros agrestis HOM05D003302 ORTHO05D003785 2.0e-08 63.5 124 27.4
Pp3c26_11300 Physcomitrium patens HOM05D003302 ORTHO05D003785 8.2e-07 58.2 114 31.6


User provided reference genes

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