Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 0.0e+00 1183.7 657 100.0
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 0.0e+00 1140.2 657 96.3
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 0.0e+00 1102.4 658 93.8
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 0.0e+00 1100.1 658 93.9
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 2.2e-301 1038.5 659 88.6
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 3.5e-299 1031.2 657 86.0
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 2.3e-298 1028.5 657 86.1
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 4.3e-289 997.7 657 84.5
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 8.1e-288 993.4 658 86.0
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 6.7e-282 973.8 659 84.8
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 3.1e-255 885.2 659 75.6
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 7.0e-255 884.0 660 77.1
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 3.5e-254 881.7 664 76.4
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 7.2e-252 874.0 665 73.5
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 3.0e-250 868.6 661 75.9
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 6.3e-248 860.9 663 74.8
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 9.1e-247 857.1 663 75.4
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 9.1e-247 857.1 662 73.9
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 4.5e-246 854.7 665 74.6
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 1.1e-244 850.1 662 71.9
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 1.2e-243 846.7 663 74.1
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 1.6e-243 846.3 662 74.2
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 2.1e-243 845.9 663 74.1
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 3.6e-243 845.1 667 75.0
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 1.0e-242 843.6 662 73.7
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 1.0e-242 843.6 660 73.6
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 3.0e-242 842.0 663 73.2
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 2.6e-241 839.0 662 73.6
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 2.6e-241 839.0 662 73.6
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 5.4e-239 831.2 663 72.9
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 2.2e-237 825.9 662 73.1
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 6.5e-237 824.3 662 73.0
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 8.5e-237 823.9 663 72.9
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 1.5e-236 823.2 666 72.8
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 2.5e-236 822.4 663 72.5
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 5.7e-233 811.2 662 70.5
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 8.3e-232 807.4 662 73.4
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.8e-231 806.2 662 70.2
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.2e-230 803.5 662 69.9
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 1.2e-230 803.5 662 69.5
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 2.0e-230 802.7 664 71.4
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 2.3e-229 799.3 662 69.8
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 2.9e-229 798.9 660 72.0
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 1.1e-228 797.0 660 70.5
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 9.5e-228 793.9 667 69.1
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 2.8e-227 792.3 672 68.2
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 4.0e-226 788.5 659 69.2
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 1.5e-225 786.6 660 70.5
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 7.5e-225 784.3 662 69.2
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 2.7e-222 775.8 660 69.4
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 7.8e-222 774.2 660 68.5
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 9.5e-220 767.3 641 69.4
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 5.2e-218 761.5 664 67.5
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 4.9e-216 755.0 661 65.8
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 7.8e-214 747.7 663 69.1
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 1.3e-213 746.9 676 68.8
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 3.3e-212 742.3 664 66.7
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 3.1e-210 735.7 544 78.5
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 3.1e-210 735.7 544 78.5
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 1.1e-207 727.2 660 68.8
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 1.4e-207 726.9 663 64.1
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 4.6e-206 721.8 661 64.3
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 3.0e-205 719.2 660 65.2
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 5.1e-205 718.4 662 67.4
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 1.1e-204 717.2 663 62.7
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 1.9e-204 716.5 655 65.2
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 2.5e-204 716.1 657 63.9
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 2.8e-203 712.6 660 65.5
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.8e-203 712.6 668 62.0
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 6.2e-203 711.4 660 65.3
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 6.2e-203 711.4 661 63.8
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 2.3e-202 709.5 673 66.3
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.1e-202 709.1 667 61.8
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 1.2e-201 707.2 663 62.7
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 4.4e-201 705.3 658 64.0
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 7.6e-201 704.5 663 64.4
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 9.9e-201 704.1 666 64.9
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.3e-200 703.7 659 65.3
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 2.9e-200 702.6 669 62.8
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.9e-200 702.6 668 61.1
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 1.4e-199 700.3 672 62.2
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 2.4e-199 699.5 660 65.2
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 4.1e-199 698.7 673 65.4
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 2.1e-198 696.4 664 62.8
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 7.8e-198 694.5 398 97.2
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 1.0e-197 694.1 665 61.7
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 1.3e-197 693.7 666 64.1
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 8.6e-197 691.0 663 62.6
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 1.1e-196 690.6 609 64.5
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 3.3e-196 689.1 658 62.6
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 3.6e-195 685.6 668 61.7
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 2.0e-193 679.9 661 62.0
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 4.4e-193 678.7 666 61.4
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 4.4e-193 678.7 660 61.8
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 3.8e-192 675.6 662 63.3
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 3.8e-192 675.6 661 61.9
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 4.9e-192 675.2 661 61.7
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 6.4e-192 674.9 661 61.6
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.9e-191 673.3 667 59.8
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.4e-191 672.9 616 65.6
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 7.1e-191 671.4 663 60.9
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 7.1e-191 671.4 663 60.9
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 7.1e-191 671.4 666 61.4
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 1.6e-190 670.2 667 63.0
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 2.1e-190 669.8 657 59.8
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 6.0e-190 668.3 662 60.9
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 6.0e-190 668.3 658 63.5
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 8.1e-187 657.9 661 60.8
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 8.1e-187 657.9 665 59.1
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 3.1e-186 656.0 664 59.5
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.5e-185 653.7 659 62.4
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 9.9e-185 651.0 661 60.2
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 1.3e-184 650.6 661 61.6
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 2.2e-184 649.8 669 59.6
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 1.4e-183 647.1 677 58.6
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 2.4e-183 646.4 668 58.4
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 4.2e-183 645.6 668 58.4
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 9.3e-183 644.4 542 69.2
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 1.1e-180 637.5 660 57.6
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 9.6e-180 634.4 666 56.5
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 6.9e-178 628.2 669 58.1
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 1.5e-177 627.1 683 58.6
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 9.9e-177 624.4 668 58.5
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 1.1e-175 620.9 657 57.8
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 1.2e-174 617.5 666 59.6
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 6.0e-174 615.1 668 56.1
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.0e-173 614.4 668 56.3
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 1.6e-171 607.1 665 56.1
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 4.8e-171 605.5 653 58.7
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 3.4e-169 599.4 663 59.7
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 8.4e-168 594.7 664 55.7
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 3.3e-164 582.8 671 53.2
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 1.8e-162 577.0 661 53.7
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 8.5e-160 568.2 645 57.8
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 2.5e-159 566.6 652 55.4
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 2.7e-158 563.1 680 54.3
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 2.3e-157 560.1 676 52.5
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.9e-156 557.0 657 54.8
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 4.3e-156 555.8 662 51.4
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 2.2e-155 553.5 683 53.3
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 5.0e-152 542.3 671 52.2
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 1.1e-151 541.2 680 51.9
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 4.7e-150 535.8 679 52.3
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 1.4e-149 534.3 627 54.1
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 1.9e-143 513.8 672 51.3
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 9.4e-143 511.5 677 49.9
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 8.0e-142 508.4 661 52.0
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 5.0e-136 489.2 542 57.2
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 7.2e-127 458.8 403 67.2
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 9.4e-127 458.4 669 46.6
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 1.8e-125 454.1 405 67.9
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 2.8e-123 446.8 631 48.2
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 7.0e-122 442.2 678 46.5
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 5.7e-116 422.5 430 60.7
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 6.8e-109 399.1 663 45.2
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 3.6e-94 350.1 676 42.3
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 6.6e-88 329.3 551 45.0
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 3.9e-80 303.5 542 42.4
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 5.1e-80 303.1 654 40.2
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 6.6e-80 302.8 233 72.5
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 7.3e-79 299.3 311 56.6
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 7.1e-74 282.7 432 44.2
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 7.9e-57 226.1 628 35.2
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 5.6e-55 219.9 273 46.5
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 4.3e-47 193.7 221 56.6
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 1.4e-37 162.2 113 70.8
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 6.7e-32 143.3 126 68.3
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.2e-28 132.5 109 59.6
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 5.9e-28 130.2 77 84.4
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 1.6e-25 122.1 156 51.3
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 2.4e-21 108.2 99 62.6
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.3e-19 102.4 78 73.1
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 1.3e-19 102.4 133 41.4
arahy.Tifrunner.gnm1.ann1.8T1JJH Arachis hypogaea HOM05D003743 ORTHO05D004311 6.5e-19 100.1 155 49.7
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.5e-18 99.0 61 77.0
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.4e-16 92.4 74 63.5
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 2.0e-12 78.6 60 66.7
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 2.2e-11 75.1 596 26.0
Nitab4.5_0000556g0130 Nicotiana tabacum HOM05D002396 ORTHO05D002779 1.5e-10 72.4 112 50.9
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 1.5e-07 62.4 400 25.2
SEGI_28495 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 2.2e-06 58.5 77 54.5
Actinidia01898 Actinidia chinensis HOM05D003743 ORTHO05D004311 2.8e-06 58.2 127 37.0
Lj8E171T0 Lonicera japonica HOM05D003743 ORTHO05D004311 3.7e-06 57.8 83 49.4


User provided reference genes

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