Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G180800 Glycine max HOM05D005098 ORTHO05D006646 7.9e-258 893.3 452 100.0
Glyma.07G195500 Glycine max HOM05D005098 ORTHO05D006646 5.0e-252 874.0 452 97.6
VMungo0647G1277 Vigna mungo HOM05D005098 ORTHO05D006646 2.8e-247 858.2 452 95.1
Lalb_Chr16g0383691 Lupinus albus HOM05D005098 ORTHO05D006646 3.2e-235 818.1 452 90.0
Lj4g0017402 Lotus japonicus HOM05D005098 ORTHO05D006646 8.8e-233 810.1 452 89.8
arahy.Tifrunner.gnm1.ann1.Q8E5AY Arachis hypogaea HOM05D005098 ORTHO05D006646 2.2e-231 805.4 452 88.7
Psat7g112680 Pisum sativum HOM05D005098 ORTHO05D006646 2.9e-228 795.0 452 86.1
TPR.G12033 Trifolium pratense HOM05D005098 ORTHO05D006646 3.8e-228 794.7 452 87.6
Medtr4g088935 Medicago truncatula HOM05D005098 ORTHO05D006646 2.5e-227 792.0 452 86.3
Medtr3g072660 Medicago truncatula HOM05D005098 ORTHO05D006646 1.2e-226 789.6 453 86.1
Phvul.002G227900 Phaseolus vulgaris HOM05D005098 ORTHO05D006646 5.2e-225 784.3 452 88.9
CsaV3_6G050060 Cucumis sativus L. HOM05D005098 ORTHO05D006646 8.0e-210 733.8 452 79.4
CiPaw.09G058200 Carya illinoinensis HOM05D005098 ORTHO05D006646 5.7e-208 727.6 452 79.2
QL05p039825 Quercus lobata HOM05D005098 ORTHO05D006646 8.3e-207 723.8 465 77.4
Actinidia07581 Actinidia chinensis HOM05D005098 ORTHO05D006646 3.5e-205 718.4 452 77.4
MD05G1314300 Malus domestica HOM05D005098 ORTHO05D006646 5.9e-205 717.6 453 78.8
TAR627G0710 Trochodendron aralioides HOM05D005098 ORTHO05D006646 7.8e-205 717.2 451 78.3
CSS0027379 Camellia sinensis var. sinensis HOM05D005098 ORTHO05D006646 8.6e-204 713.8 452 78.1
Manes.17G044000 Manihot esculenta HOM05D005098 ORTHO05D006646 8.6e-204 713.8 452 78.3
Eucgr.E03323 Eucalyptus grandis HOM05D005098 ORTHO05D006646 6.1e-202 707.6 451 75.8
Prupe.4G044800 Prunus persica HOM05D005098 ORTHO05D006646 2.3e-201 705.7 454 78.2
TWI38G1357 Tripterygium wilfordii HOM05D005098 ORTHO05D006646 5.2e-201 704.5 452 77.2
Eucgr.E03123 Eucalyptus grandis HOM05D005098 ORTHO05D006646 6.8e-201 704.1 453 75.7
CANSAT35G1139 Cannabis sativa HOM05D005098 ORTHO05D006646 4.4e-200 701.4 451 76.1
MSTRG.2567 Avicennia marina HOM05D005098 ORTHO05D006646 5.7e-200 701.0 452 76.5
Nn1g06591 Nelumbo nucifera HOM05D005098 ORTHO05D006646 7.5e-200 700.7 451 77.4
MD10G1295600 Malus domestica HOM05D005098 ORTHO05D006646 2.9e-199 698.7 482 73.4
Solyc02g078440.3 Solanum lycopersicum HOM05D005098 ORTHO05D006646 1.4e-198 696.4 452 74.6
Sopen02g023290 Solanum pennellii HOM05D005098 ORTHO05D006646 1.4e-198 696.4 452 74.6
PSO832G2562 Papaver somniferum HOM05D005098 ORTHO05D006646 3.2e-198 695.3 453 76.2
PGR142G2026 Punica granatum HOM05D005098 ORTHO05D006646 3.2e-198 695.3 452 75.0
Potri.004G041600 Populus trichocarpa HOM05D005098 ORTHO05D006646 4.1e-198 694.9 452 75.0
Aqoxy7G02591 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 1.6e-197 693.0 452 75.9
Atru.chr10.1909 Acer truncatum HOM05D005098 ORTHO05D006646 2.0e-197 692.6 452 75.9
RhsimUnG0054100 Rhododendron simsii HOM05D005098 ORTHO05D006646 3.5e-197 691.8 457 76.6
Gorai.011G026700 Gossypium raimondii HOM05D005098 ORTHO05D006646 4.6e-197 691.4 450 76.0
THA.LOC104814462 Tarenaya hassleriana HOM05D005098 ORTHO05D006646 2.3e-196 689.1 450 73.6
Rhsim10G0081000 Rhododendron simsii HOM05D005098 ORTHO05D006646 3.9e-196 688.3 466 75.1
HanXRQChr17g0560221 Helianthus annuus HOM05D005098 ORTHO05D006646 6.6e-196 687.6 453 74.2
RcHm_v2.0_Chr5g0008121 Rosa chinensis HOM05D005098 ORTHO05D006646 1.5e-195 686.4 455 74.9
FvH4_3g09430 Fragaria vesca HOM05D005098 ORTHO05D006646 1.9e-195 686.0 455 74.9
Gohir.A10G024700 Gossypium hirsutum HOM05D005098 ORTHO05D006646 1.9e-195 686.0 456 75.2
PSO210G7403 Papaver somniferum HOM05D005098 ORTHO05D006646 3.3e-195 685.3 453 75.1
HPP92_021892 Vanilla planifolia HOM05D005098 ORTHO05D006646 2.8e-194 682.2 452 74.6
Sp7g17170 Schrenkiella parvula HOM05D005098 ORTHO05D006646 4.7e-194 681.4 450 72.9
Migut.G00672 Erythranthe guttata HOM05D005098 ORTHO05D006646 3.1e-193 678.7 452 73.7
Aa31LG2G13100 Aethionema arabicum HOM05D005098 ORTHO05D006646 4.0e-193 678.3 450 72.4
Lj7A690T49 Lonicera japonica HOM05D005098 ORTHO05D006646 5.2e-193 677.9 485 70.5
BcaNung00134 Brassica carinata HOM05D005098 ORTHO05D006646 8.9e-193 677.2 450 72.7
Cc01_g06430 Coffea canephora HOM05D005098 ORTHO05D006646 2.6e-192 675.6 453 73.7
AT4G17020 Arabidopsis thaliana HOM05D005098 ORTHO05D006646 3.4e-192 675.2 450 72.4
BraA01t01956Z Brassica rapa HOM05D005098 ORTHO05D006646 4.4e-192 674.9 450 72.2
Thhalv10025179m.g Eutrema salsugineum HOM05D005098 ORTHO05D006646 7.5e-192 674.1 450 71.8
AL7G37700 Arabidopsis lyrata HOM05D005098 ORTHO05D006646 1.7e-191 672.9 450 72.2
CARHR223580 Cardamine hirsuta HOM05D005098 ORTHO05D006646 1.7e-191 672.9 450 71.8
BcaC09g50435 Brassica carinata HOM05D005098 ORTHO05D006646 2.2e-191 672.5 451 72.5
EL10Ac8g20363 Beta vulgaris HOM05D005098 ORTHO05D006646 6.4e-191 671.0 459 73.4
Duzib235G1364 Durio zibethinus HOM05D005098 ORTHO05D006646 1.4e-190 669.8 452 74.1
Peaxi162Scf00736g00425 Petunia axillaris HOM05D005098 ORTHO05D006646 2.4e-190 669.1 452 73.2
Carub.0007s2440 Capsella rubella HOM05D005098 ORTHO05D006646 5.4e-190 667.9 450 71.6
A01p20290 Brassica napus HOM05D005098 ORTHO05D006646 2.7e-189 665.6 444 72.1
CAN.G1164.12 Capsicum annuum HOM05D005098 ORTHO05D006646 5.0e-188 661.4 454 71.8
ECA234G2003 Erigeron canadensis HOM05D005098 ORTHO05D006646 5.0e-188 661.4 453 71.5
C01p25440 Brassica napus HOM05D005098 ORTHO05D006646 5.6e-187 657.9 475 68.6
Dinv40543 Davidia involucrata HOM05D005098 ORTHO05D006646 3.6e-186 655.2 481 69.6
ATR0680G123 Amborella trichopoda HOM05D005098 ORTHO05D006646 1.4e-185 653.3 470 67.7
Os04g0680000 Oryza sativa ssp. japonica HOM05D005098 ORTHO05D006646 1.5e-184 649.8 452 69.5
Sabra04G0025700 Salix brachista HOM05D005098 ORTHO05D006646 8.3e-183 644.0 455 70.5
Oeu017728.1 Olea europaea HOM05D005098 ORTHO05D006646 9.2e-182 640.6 486 67.9
Thecc.06G189900 Theobroma cacao HOM05D005098 ORTHO05D006646 3.5e-181 638.6 409 77.3
Zm00001eb065950 Zea mays HOM05D005098 ORTHO05D006646 1.2e-178 630.2 452 68.1
Nitab4.5_0002158g0040 Nicotiana tabacum HOM05D005098 ORTHO05D006646 2.8e-178 629.0 459 69.5
unitig_736.g22566 Utricularia gibba HOM05D005098 ORTHO05D006646 2.8e-178 629.0 467 69.0
SGA_v2.0_scaffold111G31518 Striga asiatica HOM05D005098 ORTHO05D006646 6.2e-178 627.9 471 68.4
Haze_05744 Corylus avellana HOM05D005098 ORTHO05D006646 6.8e-177 624.4 442 70.6
SalBow3G0169 Salvia bowleyana HOM05D005098 ORTHO05D006646 4.9e-175 618.2 479 66.0
Duzib209G0004 Durio zibethinus HOM05D005098 ORTHO05D006646 5.4e-174 614.8 452 69.7
COL.COLO4_31494 Corchorus olitorius HOM05D005098 ORTHO05D006646 3.5e-173 612.1 407 74.2
MBI18_g17000_MAGBIO Magnolia biondii HOM05D005098 ORTHO05D006646 6.6e-172 607.8 452 68.6
Nitab4.5_0005954g0050 Nicotiana tabacum HOM05D005098 ORTHO05D006646 8.1e-170 600.9 458 67.9
ClCG01G022890 Citrullus lanatus HOM05D005098 ORTHO05D006646 4.0e-169 598.6 452 67.5
vmacro15900 Vaccinium macrocarpon HOM05D005098 ORTHO05D006646 4.6e-165 585.1 494 63.2
Cpa.g.sc27.58 Carica papaya HOM05D005098 ORTHO05D006646 1.7e-164 583.2 450 67.8
FAN21G0237 Fragaria x ananassa HOM05D005098 ORTHO05D006646 1.7e-164 583.2 514 60.9
Sed0003361 Sechium edule HOM05D005098 ORTHO05D006646 1.7e-159 566.6 355 80.3
Nitab4.5_0000119g0020 Nicotiana tabacum HOM05D005098 ORTHO05D006646 2.2e-159 566.2 515 58.4
DCAR_028090 Daucus carota HOM05D005098 ORTHO05D006646 2.9e-159 565.8 399 68.9
BolC1t02496H Brassica oleracea HOM05D005098 ORTHO05D006646 8.4e-159 564.3 384 72.7
Hund21233 Selenicereus undatus HOM05D005098 ORTHO05D006646 8.4e-159 564.3 556 55.4
FAN11G1498 Fragaria x ananassa HOM05D005098 ORTHO05D006646 3.5e-157 558.9 494 60.9
Lsat_1_v5_gn_4_52761 Lactuca sativa HOM05D005098 ORTHO05D006646 9.6e-155 550.8 453 62.5
Duzib192G0974 Durio zibethinus HOM05D005098 ORTHO05D006646 1.6e-154 550.1 452 64.6
Ah.09g237250 Amaranthus hybridus HOM05D005098 ORTHO05D006646 1.4e-153 547.0 401 68.3
Gohir.D10G025400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 3.8e-151 538.9 337 77.7
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 1.5e-144 516.9 432 61.6
AUR62014801 Chenopodium quinoa HOM05D005098 ORTHO05D006646 2.1e-141 506.5 486 55.8
Mapoly0047s0044 Marchantia polymorpha HOM05D005098 ORTHO05D006646 2.5e-139 499.6 455 52.1
Sc17g0006240 Simmondsia chinensis HOM05D005098 ORTHO05D006646 3.3e-139 499.2 325 74.8
Pp3c3_5470 Physcomitrium patens HOM05D005098 ORTHO05D006646 3.3e-131 472.6 460 50.4
Dinv07544 Davidia involucrata HOM05D005098 ORTHO05D006646 3.6e-125 452.6 296 76.7
AUR62016992 Chenopodium quinoa HOM05D005098 ORTHO05D006646 5.3e-121 438.7 417 56.4
SHI01874 Sapria himalayana HOM05D005098 ORTHO05D006646 1.0e-119 434.5 505 49.1
SMO271G0092 Selaginella moellendorffii HOM05D005098 ORTHO05D006646 1.0e-119 434.5 454 48.5
Ciclev10009035m.g Citrus clementina HOM05D005098 ORTHO05D006646 2.2e-119 433.3 296 73.0
Rhsim02G0128000 Rhododendron simsii HOM05D005098 ORTHO05D006646 1.2e-112 411.0 343 64.4
CBR_g44575 Chara braunii HOM05D005098 ORTHO05D006646 1.8e-108 397.1 446 45.3
CBR_g45762 Chara braunii HOM05D005098 ORTHO05D006646 1.3e-106 391.0 446 43.7
COL.COLO4_32259 Corchorus olitorius HOM05D005098 ORTHO05D006646 4.5e-104 382.5 268 71.3
Haze_06488 Corylus avellana HOM05D005098 ORTHO05D006646 1.7e-98 364.0 433 49.0
FAN16G0038 Fragaria x ananassa HOM05D005098 ORTHO05D006646 2.4e-97 360.1 277 66.4
Aqoxy3G01806 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 1.3e-95 354.4 230 76.1
GSVIVG01002931001 Vitis vinifera HOM05D005098 ORTHO05D006646 1.7e-82 310.8 208 74.5
Ca_18535_v3 Cicer arietinum L. HOM05D005098 ORTHO05D006646 2.0e-75 287.3 283 57.6
arahy.Tifrunner.gnm1.ann1.AUX6FS Arachis hypogaea HOM05D005098 ORTHO05D006646 4.4e-75 286.2 175 81.1
GSVIVG01002018001 Vitis vinifera HOM05D005098 ORTHO05D006646 7.0e-73 278.9 259 58.3
MELO3C007290.2 Cucumis melo HOM05D005098 ORTHO05D006646 5.6e-70 269.2 238 60.9
FAN16G1787 Fragaria x ananassa HOM05D005098 ORTHO05D006646 4.1e-65 253.1 186 68.3
arahy.Tifrunner.gnm1.ann1.MC3R28 Arachis hypogaea HOM05D005098 ORTHO05D006646 5.4e-65 252.7 325 49.8
AagrBONN_evm.TU.Sc2ySwM_117.270 Anthoceros agrestis HOM05D005098 ORTHO05D006646 4.3e-62 243.0 226 51.3
MCO15G365 Micromonas commoda HOM05D005098 ORTHO05D006646 1.6e-61 241.1 456 32.5
PGSC0003DMG400022441 Solanum tuberosum HOM05D005098 ORTHO05D006646 6.0e-56 222.6 148 72.3
Cfa026287 Carpinus fangiana HOM05D003704 ORTHO05D005892 2.3e-55 220.7 464 31.5
PRCOL_00001787 Prasinoderma coloniale HOM05D005098 ORTHO05D006646 1.4e-52 211.5 519 29.1
FAN11G1346 Fragaria x ananassa HOM05D005098 ORTHO05D006646 5.8e-51 206.1 131 77.9
Cre09.g403300 Chlamydomonas reinhardtii HOM05D005098 ORTHO05D006646 1.7e-50 204.5 545 27.3
Aqoxy3G01794 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 2.0e-35 154.5 98 72.4
SEGI_14594 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 2.7e-32 144.1 100 65.0
SEGI_34698 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 2.7e-32 144.1 100 65.0
SEGI_32979 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 4.6e-32 143.3 118 61.0
Cc01_g06850 Coffea canephora HOM05D005098 ORTHO05D006646 5.1e-31 139.8 111 66.7
SEGI_19813 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.3e-26 125.2 96 61.5
Glyma.13G152508 Glycine max HOM05D005098 ORTHO05D046693 6.7e-23 112.8 185 43.2
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 1.9e-22 111.3 70 77.1
Gorai.006G108000 Gossypium raimondii HOM05D005098 ORTHO05D006646 5.7e-22 109.8 58 89.7
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 9.7e-22 109.0 69 76.8
Gohir.D09G038350 Gossypium hirsutum HOM05D005098 ORTHO05D006646 2.8e-21 107.5 69 75.4
SEGI_13032 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 3.4e-19 100.5 81 60.5
COL.COLO4_32260 Corchorus olitorius HOM05D005098 ORTHO05D006646 1.5e-14 85.1 61 62.3
Cc01_g06820 Coffea canephora HOM05D005098 ORTHO05D006646 1.3e-13 82.0 60 63.3
Aqoxy3G01796 Aquilegia oxysepala HOM05D005098 ORTHO05D031290 4.1e-12 77.0 57 64.9
SEGI_03475 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 6.9e-12 76.3 59 57.6
Rhsim06G0079100 Rhododendron simsii HOM05D005098 ORTHO05D006646 2.0e-11 74.7 52 65.4
Gohir.A04G102400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 1.0e-10 72.4 51 66.7
FAN08G2831 Fragaria x ananassa HOM05D005098 ORTHO05D031290 1.7e-10 71.6 68 57.4
FvH4_5g20991 Fragaria vesca HOM05D005098 ORTHO05D031290 3.0e-07 60.8 102 39.2
Glyma.13G152440 Glycine max HOM05D005098 ORTHO05D046693 3.0e-07 60.8 39 79.5
SEGI_28984 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 5.1e-07 60.1 38 68.4


User provided reference genes

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