Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 2967.2 1502 100.0
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 2780.7 1504 93.6
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 2664.0 1502 88.9
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 0.0e+00 2494.5 1502 84.0
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 0.0e+00 2489.5 1502 83.1
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 0.0e+00 2477.6 1502 83.0
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 2466.8 1505 82.7
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 0.0e+00 2446.4 1502 82.4
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 0.0e+00 2374.7 1508 80.0
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 2353.9 1525 78.8
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 2353.9 1525 78.8
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 2075.4 1507 73.0
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1932.9 1557 67.3
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 0.0e+00 1917.9 1506 64.9
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 0.0e+00 1867.4 1514 63.0
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 0.0e+00 1848.6 1508 62.9
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 0.0e+00 1800.0 1543 61.0
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 0.0e+00 1793.5 1504 61.4
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1779.2 1514 60.0
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 0.0e+00 1773.8 1520 61.2
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 0.0e+00 1757.3 1502 59.8
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1756.1 1518 61.1
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 0.0e+00 1725.3 1508 59.2
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 0.0e+00 1719.1 1500 59.7
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 0.0e+00 1717.2 1519 58.5
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 0.0e+00 1713.7 1535 58.4
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1704.9 1470 60.2
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 0.0e+00 1691.8 1540 58.6
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 0.0e+00 1691.8 1498 60.3
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 0.0e+00 1687.5 1516 59.4
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 0.0e+00 1681.0 1510 57.9
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 0.0e+00 1666.4 1517 57.5
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 0.0e+00 1658.3 1515 57.2
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 0.0e+00 1656.0 1509 58.3
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 0.0e+00 1626.3 1622 53.9
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 0.0e+00 1617.8 1507 55.8
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1614.4 1502 57.1
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 0.0e+00 1612.4 1500 57.4
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 0.0e+00 1601.3 1515 55.4
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 0.0e+00 1598.9 1515 55.0
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 0.0e+00 1595.1 1506 56.8
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 0.0e+00 1586.6 1512 56.2
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 0.0e+00 1579.3 1514 54.6
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 0.0e+00 1572.0 1518 55.5
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1570.4 1512 54.3
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1567.7 1437 58.1
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 0.0e+00 1567.4 1512 54.8
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1566.2 1515 54.5
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 0.0e+00 1554.7 1203 66.1
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 0.0e+00 1545.4 1505 53.9
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 0.0e+00 1525.4 1510 53.4
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 0.0e+00 1520.8 1537 52.5
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 0.0e+00 1510.4 1506 52.9
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1499.2 1506 53.5
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 0.0e+00 1486.5 1284 59.9
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1484.5 1507 52.2
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 0.0e+00 1474.5 1526 53.3
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1472.6 1494 52.5
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1464.5 1496 52.2
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 0.0e+00 1460.3 1504 52.7
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 0.0e+00 1449.5 1526 51.4
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1434.1 1529 50.0
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 0.0e+00 1414.8 1503 51.2
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1407.9 1233 59.9
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 0.0e+00 1394.4 1503 50.8
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 0.0e+00 1372.8 1512 49.7
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 0.0e+00 1372.8 1520 49.5
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 0.0e+00 1367.4 1510 49.5
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 0.0e+00 1358.2 1510 49.3
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 0.0e+00 1356.3 1508 49.5
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 0.0e+00 1353.6 1504 48.1
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1352.8 1504 49.1
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 0.0e+00 1347.8 1445 50.1
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 0.0e+00 1340.9 1504 48.9
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 0.0e+00 1337.0 1513 48.3
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1328.2 1512 48.2
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1327.0 1540 47.5
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 0.0e+00 1323.5 1512 47.9
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 0.0e+00 1318.1 1518 48.7
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1312.4 1753 42.8
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1311.2 1544 47.0
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1248.0 1391 49.7
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1231.5 1545 45.4
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1219.9 1534 45.4
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 0.0e+00 1214.9 1157 55.6
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1212.2 1123 57.5
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 0.0e+00 1194.1 1507 44.7
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 0.0e+00 1187.6 1289 50.1
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 0.0e+00 1172.9 1133 56.2
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 0.0e+00 1163.3 1055 58.8
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 0.0e+00 1156.4 1121 55.4
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 4.1e-303 1045.4 982 56.2
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 3.1e-298 1029.2 568 89.3
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 3.7e-259 899.4 1133 44.5
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 3.8e-240 836.3 1543 35.5
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.0e-237 828.2 1145 41.6
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 5.0e-232 809.3 1557 35.3
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 3.2e-223 780.0 1532 34.9
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 3.4e-212 743.4 1019 43.6
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 1.3e-211 741.5 589 64.5
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 5.4e-210 736.1 574 65.7
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 5.5e-207 726.1 976 42.6
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 4.4e-196 689.9 1018 41.7
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 4.1e-194 683.3 1015 41.5
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 9.2e-194 682.2 1016 41.1
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 2.5e-191 674.1 643 55.8
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 7.0e-186 656.0 591 57.7
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 2.7e-185 654.1 1405 33.0
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 2.6e-180 637.5 603 56.7
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 1.3e-155 555.4 367 77.4
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 1.9e-151 541.6 478 59.0
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.8e-141 508.4 573 49.9
SEGI_12765 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 5.3e-125 453.8 576 44.8
unitig_22.g5791 Utricularia gibba HOM05D001082 ORTHO05D005120 1.7e-123 448.7 564 44.1
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 3.7e-118 431.0 1040 33.8
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 1.4e-104 386.0 527 43.1
CBR_g55211 Chara braunii HOM05D000019 ORTHO05D000048 6.1e-97 360.5 1002 27.6
ClCG06G008340 Citrullus lanatus HOM05D001082 ORTHO05D005120 5.2e-96 357.5 544 40.1
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 4.5e-92 344.4 501 41.9
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 1.5e-87 329.3 195 87.2
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 6.6e-83 313.9 446 41.9
MD05G1161300 Malus domestica HOM05D001082 ORTHO05D005120 4.3e-82 311.2 412 47.1
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.5e-79 302.8 327 51.4
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 9.2e-77 293.5 200 73.0
CDE01G0761 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 2.7e-76 292.0 335 46.3
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 3.5e-76 291.6 304 53.9
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 1.0e-75 290.0 308 47.4
MD08G1158600 Malus domestica HOM05D001082 ORTHO05D005120 5.0e-75 287.7 452 42.3
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 1.1e-74 286.6 275 54.2
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 8.3e-70 270.4 468 36.1
Hma1.2p1_0052F.1_g030140 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 8.6e-67 260.4 213 60.1
FAN09G1182 Fragaria x ananassa HOM05D001082 ORTHO05D005120 1.1e-66 260.0 212 61.8
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 2.5e-66 258.8 150 85.3
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 1.8e-64 252.7 803 28.3
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 2.0e-63 249.2 250 56.4
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 4.4e-63 248.1 386 39.4
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.1e-60 239.2 368 40.5
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 9.6e-58 230.3 125 88.8
SEGI_08839 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.0e-55 222.6 293 44.4
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 2.2e-54 219.2 280 42.1
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 8.4e-54 217.2 343 42.9
Os02g0142500 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 1.2e-52 213.4 192 53.6
SEGI_20053 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.1e-50 206.8 301 40.9
ClCG06G008370 Citrullus lanatus HOM05D001082 ORTHO05D005120 3.0e-43 182.2 130 63.8
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 4.3e-42 178.3 195 51.8
SHI21155 Sapria himalayana HOM05D001082 ORTHO05D005120 4.5e-39 168.3 196 47.4
Cpa.g.sc21.215 Carica papaya HOM05D001082 ORTHO05D005120 1.7e-38 166.4 122 67.2
HPP92_015361 Vanilla planifolia HOM05D001082 ORTHO05D005120 2.4e-37 162.5 388 32.7
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 4.2e-37 161.8 191 49.2
Os02g0142950 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 6.9e-32 144.4 116 56.9
Lsat_1_v5_gn_8_801 Lactuca sativa HOM05D000349 ORTHO05D005120 1.4e-29 136.7 116 59.5
BcaC07g37555 Brassica carinata HOM05D001082 ORTHO05D005120 4.6e-28 131.7 116 56.0
CBR_g55210 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-18 99.8 245 29.8
GSVIVG01013013001 Vitis vinifera HOM05D001082 ORTHO05D005120 9.7e-18 97.4 102 49.0
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 9.0e-16 90.9 100 52.0
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 4.5e-15 88.6 100 51.0
Cre07.g324000 Chlamydomonas reinhardtii HOM05D001082 ORTHO05D005120 3.8e-14 85.5 670 21.2
MCO16G497 Micromonas commoda HOM05D001082 ORTHO05D005120 1.4e-08 67.0 234 27.8
BolC8t47896H Brassica oleracea HOM05D001082 ORTHO05D039247 2.6e-07 62.8 45 55.6
MBI12_g24277_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 2.9e-06 59.3 61 45.9
BcaB06g28204 Brassica carinata HOM05D001082 ORTHO05D005120 6.5e-06 58.2 143 34.3


User provided reference genes

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