Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G074600 Glycine max HOM05D002112 ORTHO05D005830 8.0e-211 736.9 384 100.0
Glyma.20G048400 Glycine max HOM05D002112 ORTHO05D005830 7.1e-199 697.2 384 94.8
VMungo0540G0891 Vigna mungo HOM05D002112 ORTHO05D005830 2.8e-187 658.7 384 90.4
Phvul.006G021000 Phaseolus vulgaris HOM05D002112 ORTHO05D005830 2.3e-181 639.0 384 87.0
Lj6g0007258 Lotus japonicus HOM05D002112 ORTHO05D005830 3.9e-181 638.3 384 85.4
Ca_04336_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005830 4.2e-175 618.2 384 83.9
Haze_01451 Corylus avellana HOM05D002112 ORTHO05D005830 2.3e-165 585.9 384 77.9
Medtr3g040090 Medicago truncatula HOM05D002112 ORTHO05D005830 8.4e-160 567.4 384 78.4
CiPaw.01G095700 Carya illinoinensis HOM05D002112 ORTHO05D005830 9.3e-159 563.9 384 74.7
QL10p051275 Quercus lobata HOM05D002112 ORTHO05D005830 3.5e-158 562.0 383 75.7
arahy.Tifrunner.gnm1.ann1.PNXW1P Arachis hypogaea HOM05D002112 ORTHO05D005830 4.6e-158 561.6 391 75.4
Dinv17874 Davidia involucrata HOM05D002112 ORTHO05D005830 4.6e-158 561.6 384 75.5
arahy.Tifrunner.gnm1.ann1.9N9T88 Arachis hypogaea HOM05D002112 ORTHO05D005830 1.0e-157 560.5 391 75.4
Atru.chr4.1269 Acer truncatum HOM05D002112 ORTHO05D005830 8.7e-157 557.4 384 75.3
GSVIVG01010853001 Vitis vinifera HOM05D002112 ORTHO05D005830 8.7e-157 557.4 384 74.2
TPR.G11324 Trifolium pratense HOM05D002112 ORTHO05D005830 1.3e-155 553.5 384 75.0
Lalb_Chr17g0347631 Lupinus albus HOM05D002112 ORTHO05D005830 2.8e-155 552.4 385 74.0
Lj2A342T117 Lonicera japonica HOM05D002112 ORTHO05D005830 3.1e-154 548.9 386 73.1
TAR369G0031 Trochodendron aralioides HOM05D002112 ORTHO05D005830 1.2e-153 547.0 384 72.9
Lalb_Chr04g0249531 Lupinus albus HOM05D002112 ORTHO05D005830 4.5e-153 545.0 386 74.1
Ca_06168_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005830 6.5e-152 541.2 381 73.2
Ca_06185_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005830 6.5e-152 541.2 381 73.2
Manes.04G047300 Manihot esculenta HOM05D002112 ORTHO05D005830 4.2e-151 538.5 384 71.6
Actinidia22156 Actinidia chinensis HOM05D002112 ORTHO05D005830 1.0e-149 533.9 384 70.1
Psat2g021160 Pisum sativum HOM05D002112 ORTHO05D005830 1.0e-149 533.9 385 71.2
RcHm_v2.0_Chr2g0118821 Rosa chinensis HOM05D002112 ORTHO05D005830 2.3e-149 532.7 386 73.6
Medtr5g088340 Medicago truncatula HOM05D002112 ORTHO05D005830 3.0e-149 532.3 384 70.6
Duzib151G0469 Durio zibethinus HOM05D002112 ORTHO05D005830 8.7e-149 530.8 385 72.5
Ciclev10020598m.g Citrus clementina HOM05D002112 ORTHO05D005830 1.9e-148 529.6 384 70.1
Sc19g0002800 Simmondsia chinensis HOM05D002112 ORTHO05D005830 2.5e-148 529.3 384 69.8
CANSAT78G1637 Cannabis sativa HOM05D002112 ORTHO05D005830 3.3e-148 528.9 384 69.8
Prupe.1G198700 Prunus persica HOM05D002112 ORTHO05D005830 9.7e-148 527.3 375 73.3
Thhalv10020922m.g Eutrema salsugineum HOM05D002112 ORTHO05D005830 1.4e-146 523.5 386 70.7
DCAR_007772 Daucus carota HOM05D002112 ORTHO05D005830 6.9e-146 521.2 378 71.7
Sabra17G0000800 Salix brachista HOM05D002112 ORTHO05D005830 1.2e-145 520.4 371 73.3
Thecc.04G174100 Theobroma cacao HOM05D002112 ORTHO05D005830 1.2e-145 520.4 387 69.5
MD04G1045800 Malus domestica HOM05D002112 ORTHO05D005830 2.6e-145 519.2 384 70.3
Sabra17G0015800 Salix brachista HOM05D002112 ORTHO05D005830 2.6e-145 519.2 371 73.0
Actinidia04201 Actinidia chinensis HOM05D002112 ORTHO05D005830 3.4e-145 518.8 416 65.9
Gohir.D10G126900 Gossypium hirsutum HOM05D002112 ORTHO05D005830 7.7e-145 517.7 387 70.0
THA.LOC104817851 Tarenaya hassleriana HOM05D002112 ORTHO05D005830 7.7e-145 517.7 368 71.7
Gohir.A10G139900 Gossypium hirsutum HOM05D002112 ORTHO05D005830 1.3e-144 516.9 387 69.8
HanXRQChr02g0033051 Helianthus annuus HOM05D002112 ORTHO05D005830 1.7e-144 516.5 351 73.2
CARHR095970 Cardamine hirsuta HOM05D002112 ORTHO05D005830 2.2e-144 516.2 388 69.8
Rhsim07G0082300 Rhododendron simsii HOM05D002112 ORTHO05D005830 6.5e-144 514.6 386 68.1
Gorai.011G139800 Gossypium raimondii HOM05D002112 ORTHO05D005830 8.5e-144 514.2 387 69.8
Sp3g18350 Schrenkiella parvula HOM05D002112 ORTHO05D005830 8.5e-144 514.2 386 69.7
Solyc02g082030.3 Solanum lycopersicum HOM05D002112 ORTHO05D005830 1.1e-143 513.8 354 71.5
Sopen02g026670 Solanum pennellii HOM05D002112 ORTHO05D005830 1.1e-143 513.8 354 71.5
Glyma.14G040300 Glycine max HOM05D002112 ORTHO05D005830 4.2e-143 511.9 385 68.1
Carub.0003s2027 Capsella rubella HOM05D002112 ORTHO05D005830 7.2e-143 511.1 386 69.2
HanXRQChr12g0380031 Helianthus annuus HOM05D002112 ORTHO05D005830 7.2e-143 511.1 391 67.5
Peaxi162Scf00036g02120 Petunia axillaris HOM05D002112 ORTHO05D005830 1.2e-142 510.4 360 69.7
Cc09_g04780 Coffea canephora HOM05D002112 ORTHO05D005830 1.6e-142 510.0 392 68.6
Potri.007G131700 Populus trichocarpa HOM05D002112 ORTHO05D005830 1.6e-142 510.0 380 70.8
Sabra07G0106900 Salix brachista HOM05D002112 ORTHO05D005830 1.6e-142 510.0 386 68.9
Sabra07G0118800 Salix brachista HOM05D002112 ORTHO05D005830 1.6e-142 510.0 386 68.9
ECA246G0582 Erigeron canadensis HOM05D002112 ORTHO05D005830 2.1e-142 509.6 325 77.8
vmacro13897 Vaccinium macrocarpon HOM05D002112 ORTHO05D005830 2.1e-142 509.6 387 68.2
Aa31LG8G7130 Aethionema arabicum HOM05D002112 ORTHO05D005830 3.6e-142 508.8 375 69.6
Potri.017G026100 Populus trichocarpa HOM05D002112 ORTHO05D005830 3.6e-142 508.8 387 69.3
PGSC0003DMG400007324 Solanum tuberosum HOM05D002112 ORTHO05D005830 3.6e-142 508.8 390 66.4
MBI14_g20102_MAGBIO Magnolia biondii HOM05D002112 ORTHO05D005830 4.6e-142 508.4 384 67.4
AL3G34040 Arabidopsis lyrata HOM05D002112 ORTHO05D005830 6.1e-142 508.1 375 69.6
Phvul.008G205800 Phaseolus vulgaris HOM05D002112 ORTHO05D005830 1.8e-141 506.5 386 70.5
C05p44010 Brassica napus HOM05D002112 ORTHO05D005377 2.3e-141 506.1 382 68.1
FAN26G0200 Fragaria x ananassa HOM05D002112 ORTHO05D005830 2.3e-141 506.1 386 70.2
QL11p031638 Quercus lobata HOM05D002112 ORTHO05D005830 2.3e-141 506.1 385 67.8
COL.COLO4_08219 Corchorus olitorius HOM05D002112 ORTHO05D005830 3.0e-141 505.8 384 69.0
FvH4_1g23450 Fragaria vesca HOM05D002112 ORTHO05D005830 3.0e-141 505.8 386 69.9
FAN19G2557 Fragaria x ananassa HOM05D002112 ORTHO05D005830 3.0e-141 505.8 386 69.9
BolC5t33124H Brassica oleracea HOM05D002112 ORTHO05D005830 3.9e-141 505.4 382 68.1
BcaC05g28317 Brassica carinata HOM05D002112 ORTHO05D005377 5.1e-141 505.0 382 68.1
Nitab4.5_0000632g0010 Nicotiana tabacum HOM05D002112 ORTHO05D005830 6.7e-141 504.6 354 70.3
TWI38G0996 Tripterygium wilfordii HOM05D002112 ORTHO05D005830 6.7e-141 504.6 385 68.6
Eucgr.I00215 Eucalyptus grandis HOM05D002112 ORTHO05D005830 8.8e-141 504.2 365 70.7
PSO339G3553 Papaver somniferum HOM05D002112 ORTHO05D005830 8.8e-141 504.2 385 67.0
FAN23G2661 Fragaria x ananassa HOM05D002112 ORTHO05D005830 2.0e-140 503.1 386 69.9
A05p28600 Brassica napus HOM05D002112 ORTHO05D005377 3.3e-140 502.3 382 68.1
BraA05t21737Z Brassica rapa HOM05D002112 ORTHO05D005377 3.3e-140 502.3 382 68.1
Migut.M02025 Erythranthe guttata HOM05D002112 ORTHO05D005830 7.4e-140 501.1 349 72.2
CAN.G809.29 Capsicum annuum HOM05D002112 ORTHO05D005830 1.7e-139 500.0 323 74.3
AUR62031652 Chenopodium quinoa HOM05D002112 ORTHO05D005830 3.7e-139 498.8 386 66.3
Nn2g10363 Nelumbo nucifera HOM05D002112 ORTHO05D005830 1.1e-138 497.3 351 71.8
Aqoxy7G04120 Aquilegia oxysepala HOM05D002112 ORTHO05D005830 6.9e-138 494.6 382 66.8
BolC1t04335H Brassica oleracea HOM05D002112 ORTHO05D005377 1.5e-137 493.4 372 68.8
BcaB04g20660 Brassica carinata HOM05D002112 ORTHO05D005830 1.7e-136 490.0 368 69.0
Dinv21066 Davidia involucrata HOM05D002112 ORTHO05D005830 3.8e-136 488.8 386 67.1
C01p43770 Brassica napus HOM05D002112 ORTHO05D005830 6.5e-136 488.0 368 67.9
BcaC09g48987 Brassica carinata HOM05D002112 ORTHO05D005377 1.1e-135 487.3 368 68.2
SalBow5G0693 Salvia bowleyana HOM05D002112 ORTHO05D005830 2.5e-135 486.1 390 66.9
VMungo0647G1998 Vigna mungo HOM05D002112 ORTHO05D005830 5.5e-135 485.0 385 67.8
CiPaw.06G167000 Carya illinoinensis HOM05D002112 ORTHO05D005830 1.4e-133 480.3 384 65.6
unitig_748.g7486 Utricularia gibba HOM05D002112 ORTHO05D005830 9.7e-132 474.2 357 67.8
DCAR_003742 Daucus carota HOM05D002112 ORTHO05D005830 2.4e-130 469.5 356 69.1
MELO3C015704.2 Cucumis melo HOM05D002112 ORTHO05D005830 4.5e-129 465.3 385 64.7
ATR0559G336 Amborella trichopoda HOM05D002112 ORTHO05D005830 1.0e-128 464.2 384 63.3
Peaxi162Scf00276g01115 Petunia axillaris HOM05D002112 ORTHO05D005830 3.8e-128 462.2 394 62.2
Nitab4.5_0003902g0080 Nicotiana tabacum HOM05D002112 ORTHO05D005830 7.2e-127 458.0 330 68.5
EL10Ac2g03438 Beta vulgaris HOM05D002112 ORTHO05D005830 3.6e-126 455.7 384 61.7
Haze_10243 Corylus avellana HOM05D002112 ORTHO05D005830 1.1e-124 450.7 384 62.5
SGA_v2.0_scaffold16G07839 Striga asiatica HOM05D002112 ORTHO05D005830 1.1e-124 450.7 487 53.0
Duzib212G0454 Durio zibethinus HOM05D002112 ORTHO05D005830 2.2e-123 446.4 387 63.3
BraA01t03533Z Brassica rapa HOM05D002112 ORTHO05D005830 9.1e-122 441.0 372 64.5
Zm00001eb362140 Zea mays HOM05D002112 ORTHO05D005830 1.0e-120 437.6 375 59.2
Ah.14g085620 Amaranthus hybridus HOM05D002112 ORTHO05D005830 2.5e-119 433.0 378 62.2
Hma1.2p1_2907F.1_g330140 Hydrangea macrophylla HOM05D002112 ORTHO05D005830 3.0e-117 426.0 338 67.5
CDE08G1601 Ceratophyllum demersum HOM05D002112 ORTHO05D005830 2.0e-116 423.3 384 57.8
Os01g0974000 Oryza sativa ssp. japonica HOM05D002112 ORTHO05D005830 1.3e-115 420.6 322 64.9
ClCG09G018870 Citrullus lanatus HOM05D002112 ORTHO05D005830 1.2e-113 414.1 455 53.2
Lsat_1_v5_gn_3_102740 Lactuca sativa HOM05D002112 ORTHO05D005830 2.0e-113 413.3 351 62.4
Gohir.A02G114100 Gossypium hirsutum HOM05D002112 ORTHO05D005830 2.9e-112 409.5 326 65.6
SEGI_07155 Sequoiadendron giganteum HOM05D002112 ORTHO05D005830 1.8e-109 400.2 313 62.6
vmacro12410 Vaccinium macrocarpon HOM05D002112 ORTHO05D005830 3.0e-109 399.4 271 76.0
Psat5g187680 Pisum sativum HOM05D002112 ORTHO05D005830 3.4e-108 396.0 284 74.3
BcaB06g26098 Brassica carinata HOM05D002112 ORTHO05D005377 8.3e-107 391.3 325 63.1
HPP92_018143 Vanilla planifolia HOM05D002112 ORTHO05D005830 2.3e-104 383.3 352 54.8
PSO151G0006 Papaver somniferum HOM05D002112 ORTHO05D005830 2.9e-104 382.9 369 57.5
Gohir.A08G075500 Gossypium hirsutum HOM05D002112 ORTHO05D005830 2.3e-101 373.2 285 67.0
Mapoly0038s0049 Marchantia polymorpha HOM05D002112 ORTHO05D005830 1.2e-100 370.9 344 53.5
Oeu010462.1 Olea europaea HOM05D002112 ORTHO05D005830 1.5e-100 370.5 284 65.5
MSTRG.24953 Avicennia marina HOM05D002112 ORTHO05D005830 3.4e-100 369.4 280 66.4
Lj1A1151T82 Lonicera japonica HOM05D002112 ORTHO05D005830 1.7e-99 367.1 290 63.8
Sed0017575 Sechium edule HOM05D002112 ORTHO05D005830 1.8e-98 363.6 287 66.2
AT3G20320 Arabidopsis thaliana HOM05D002112 ORTHO05D005830 1.2e-97 360.9 286 65.0
Pp3c12_4060 Physcomitrium patens HOM05D002112 ORTHO05D005830 2.7e-97 359.8 347 50.7
CsaV3_7G002030 Cucumis sativus L. HOM05D002112 ORTHO05D005830 6.6e-96 355.1 287 64.1
Pp3c3_12480 Physcomitrium patens HOM05D002112 ORTHO05D005830 6.6e-96 355.1 338 51.8
SMO356G0377 Selaginella moellendorffii HOM05D002112 ORTHO05D005830 4.3e-95 352.4 306 57.5
ClCG02G003310 Citrullus lanatus HOM05D002112 ORTHO05D005830 9.5e-95 351.3 308 61.7
A01p34360 Brassica napus HOM05D002112 ORTHO05D005830 1.2e-94 350.9 273 65.9
MD13G1257900 Malus domestica HOM05D002112 ORTHO05D005830 1.6e-94 350.5 291 63.9
Cfa004646 Carpinus fangiana HOM05D002112 ORTHO05D005830 2.1e-94 350.1 323 58.2
CBR_g24153 Chara braunii HOM05D002112 ORTHO05D005830 2.6e-92 343.2 309 54.7
AagrBONN_evm.TU.Sc2ySwM_362.2463 Anthoceros agrestis HOM05D002112 ORTHO05D005830 1.4e-90 337.4 326 53.4
Hund03181 Selenicereus undatus HOM05D002112 ORTHO05D005830 5.4e-90 335.5 310 58.7
SHI29120 Sapria himalayana HOM05D002112 ORTHO05D005830 1.2e-89 334.3 381 49.6
Zm00001eb139760 Zea mays HOM05D002112 ORTHO05D005830 8.6e-88 328.2 281 59.4
TAR623G0168 Trochodendron aralioides HOM05D002112 ORTHO05D005830 8.3e-83 311.6 238 66.0
Peaxi162Scf00580g00069 Petunia axillaris HOM05D002112 ORTHO05D005830 3.1e-77 293.1 239 62.3
MCO07G431 Micromonas commoda HOM05D002112 ORTHO05D005830 1.7e-75 287.3 316 46.5
QL02p069440 Quercus lobata HOM05D002112 ORTHO05D005830 7.1e-74 282.0 216 65.3
Cre16.g694400 Chlamydomonas reinhardtii HOM05D002112 ORTHO05D005830 7.8e-65 251.9 306 42.5
PRCOL_00002736 Prasinoderma coloniale HOM05D002112 ORTHO05D005830 7.8e-65 251.9 302 43.0
Sc07g0004100 Simmondsia chinensis HOM05D002112 ORTHO05D005830 1.3e-51 208.0 175 58.9
Glyma.02G275800 Glycine max HOM05D002112 ORTHO05D005830 2.4e-50 203.8 175 60.6
TAR623G1172 Trochodendron aralioides HOM05D002112 ORTHO05D005830 2.5e-47 193.7 129 80.6
Cpa.g.c39485 Carica papaya HOM05D002112 ORTHO05D005830 6.5e-43 179.1 127 69.3
AUR62038882 Chenopodium quinoa HOM05D002112 ORTHO05D005830 2.1e-38 164.1 97 87.6
FAN28G2322 Fragaria x ananassa HOM05D002112 ORTHO05D005830 2.1e-38 164.1 101 85.1
Lj1A1151T83 Lonicera japonica HOM05D002112 ORTHO05D005830 4.8e-38 162.9 97 88.7
Oeu010464.1 Olea europaea HOM05D002112 ORTHO05D005830 6.3e-38 162.5 104 82.7
Oeu037772.1 Olea europaea HOM05D002112 ORTHO05D005830 6.9e-37 159.1 101 82.2
MD13G1258100 Malus domestica HOM05D002112 ORTHO05D005830 1.9e-26 124.4 77 80.5
Gohir.A08G072300 Gossypium hirsutum HOM05D002112 ORTHO05D010805 9.4e-26 122.1 105 61.0
A01p34370 Brassica napus HOM05D000233 ORTHO05D000020 1.0e-19 102.1 59 81.4
Peaxi162Scf00036g02121 Petunia axillaris HOM05D002112 ORTHO05D005830 3.8e-19 100.1 61 82.0
Cre09.g395028 Chlamydomonas reinhardtii HOM05D002112 ORTHO05D143200 4.5e-12 76.6 105 38.1
Sc09g0004030 Simmondsia chinensis HOM05D005136 ORTHO05D006619 5.9e-12 76.3 73 53.4
Sc07g0004110 Simmondsia chinensis HOM05D002112 ORTHO05D010805 2.9e-11 73.9 51 68.6
Hma1.2p1_1220F.1_g268110 Hydrangea macrophylla HOM05D002112 ORTHO05D005830 2.3e-08 64.3 40 82.5
Hma1.2p1_1220F.1_g268115 Hydrangea macrophylla HOM05D002112 ORTHO05D005830 2.3e-08 64.3 40 82.5
Hma1.2p1_2907F.1_g330145 Hydrangea macrophylla HOM05D002112 ORTHO05D005830 2.3e-08 64.3 40 82.5
SEGI_04192 Sequoiadendron giganteum HOM05D002112 ORTHO05D384887 3.3e-07 60.5 60 55.0


User provided reference genes

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