Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G245400 Glycine max HOM05D004549 ORTHO05D005390 3.0e-100 368.6 198 100.0
Glyma.18G011800 Glycine max HOM05D004549 ORTHO05D005390 1.5e-75 286.6 199 80.4
Lj6g0007818 Lotus japonicus HOM05D004549 ORTHO05D005390 5.1e-68 261.5 210 75.2
Gohir.D01G153400 Gossypium hirsutum HOM05D004549 ORTHO05D005390 1.5e-67 260.0 206 72.8
Gorai.002G190000 Gossypium raimondii HOM05D004549 ORTHO05D005390 1.5e-67 260.0 206 72.8
Gohir.A01G156900 Gossypium hirsutum HOM05D004549 ORTHO05D005390 3.3e-67 258.8 206 72.3
QL03p055962 Quercus lobata HOM05D004549 ORTHO05D005390 1.3e-66 256.9 206 73.3
Lj6g0014292 Lotus japonicus HOM05D004549 ORTHO05D005390 1.6e-66 256.5 212 75.0
Duzib251G0883 Durio zibethinus HOM05D004549 ORTHO05D005390 2.8e-66 255.8 206 71.8
TWI36G1485 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 3.7e-66 255.4 206 71.8
VMungo1383G1841 Vigna mungo HOM05D004549 ORTHO05D005390 4.8e-66 255.0 206 71.4
Nn4g22506 Nelumbo nucifera HOM05D004549 ORTHO05D005390 6.9e-65 251.1 206 70.4
Thecc.02G268400 Theobroma cacao HOM05D004549 ORTHO05D005390 1.5e-64 250.0 206 70.4
Duzib268G0224 Durio zibethinus HOM05D004549 ORTHO05D005390 5.8e-64 248.1 206 70.9
Oeu009692.1 Olea europaea HOM05D004549 ORTHO05D005390 5.8e-64 248.1 202 70.3
TWI18G0700 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 5.8e-64 248.1 206 71.8
Phvul.001G257100 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 2.2e-63 246.1 202 69.8
Manes.13G019200 Manihot esculenta HOM05D004549 ORTHO05D005390 4.9e-63 245.0 203 71.4
MBI11_g33737_MAGBIO Magnolia biondii HOM05D004549 ORTHO05D005390 6.5e-63 244.6 206 70.4
Cfa009269 Carpinus fangiana HOM05D004549 ORTHO05D005390 1.4e-62 243.4 206 71.4
Oeu004470.1 Olea europaea HOM05D004549 ORTHO05D005390 1.9e-62 243.0 205 68.3
Dinv11022 Davidia involucrata HOM05D004549 ORTHO05D005390 2.5e-62 242.7 199 71.9
ClCG08G017510 Citrullus lanatus HOM05D004549 ORTHO05D005390 3.2e-62 242.3 207 70.5
Haze_12303 Corylus avellana HOM05D004549 ORTHO05D005390 5.5e-62 241.5 206 70.4
Cpa.g.sc122.10 Carica papaya HOM05D004549 ORTHO05D005390 9.3e-62 240.7 200 72.0
TAR622G0384 Trochodendron aralioides HOM05D004549 ORTHO05D005390 9.3e-62 240.7 204 71.1
COL.COLO4_23543 Corchorus olitorius HOM05D004549 ORTHO05D005390 2.1e-61 239.6 207 69.1
Manes.12G018800 Manihot esculenta HOM05D004549 ORTHO05D005390 2.7e-61 239.2 201 71.1
Potri.010G052000 Populus trichocarpa HOM05D004549 ORTHO05D005390 3.5e-61 238.8 202 70.3
arahy.Tifrunner.gnm1.ann1.J2LHWB Arachis hypogaea HOM05D004549 ORTHO05D005390 4.6e-61 238.4 208 70.2
Potri.008G181900 Populus trichocarpa HOM05D004549 ORTHO05D005390 1.3e-60 236.9 196 68.9
CsaV3_2G025120 Cucumis sativus L. HOM05D004549 ORTHO05D005390 1.8e-60 236.5 207 69.1
TAR374G0110 Trochodendron aralioides HOM05D004549 ORTHO05D005390 2.3e-60 236.1 206 68.4
MELO3C010708.2 Cucumis melo HOM05D004549 ORTHO05D005390 5.1e-60 235.0 207 69.1
Medtr8g089610 Medicago truncatula HOM05D004549 ORTHO05D005390 1.9e-59 233.0 204 70.1
Sabra08G0138600 Salix brachista HOM05D004549 ORTHO05D005390 2.5e-59 232.6 198 67.7
Actinidia08109 Actinidia chinensis HOM05D004549 ORTHO05D005390 5.7e-59 231.5 203 66.5
CiPaw.11G070800 Carya illinoinensis HOM05D004549 ORTHO05D005390 5.7e-59 231.5 206 65.5
MD16G1106800 Malus domestica HOM05D004549 ORTHO05D005390 5.7e-59 231.5 196 70.4
Ca_25121_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 1.3e-58 230.3 203 69.0
Ciclev10032789m.g Citrus clementina HOM05D004549 ORTHO05D005390 1.6e-58 229.9 207 67.6
Oeu059785.1 Olea europaea HOM05D004549 ORTHO05D005390 1.6e-58 229.9 203 67.5
TPR.G6278 Trifolium pratense HOM05D004549 ORTHO05D005390 1.6e-58 229.9 208 65.9
Sed0013558 Sechium edule HOM05D004549 ORTHO05D005390 2.1e-58 229.6 207 66.7
Eucgr.B03236 Eucalyptus grandis HOM05D004549 ORTHO05D005390 3.7e-58 228.8 205 65.9
Peaxi162Scf00128g00628 Petunia axillaris HOM05D004549 ORTHO05D005390 3.7e-58 228.8 208 68.3
Rhsim12G0037700 Rhododendron simsii HOM05D004549 ORTHO05D005390 3.7e-58 228.8 205 66.8
Hma1.2p1_0079F.1_g041330 Hydrangea macrophylla HOM05D004549 ORTHO05D005390 6.3e-58 228.0 203 68.5
Lalb_Chr07g0185571 Lupinus albus HOM05D004549 ORTHO05D005390 8.2e-58 227.6 210 68.6
Psat7g059720 Pisum sativum HOM05D004549 ORTHO05D005390 1.1e-57 227.3 206 68.4
FAN07G0129 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.4e-57 226.9 201 67.7
FAN17G2166 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.4e-57 226.9 200 66.5
Nitab4.5_0008037g0010 Nicotiana tabacum HOM05D004549 ORTHO05D005390 1.4e-57 226.9 205 68.8
Aqoxy5G03620 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 1.8e-57 226.5 207 63.3
Psat5g094200 Pisum sativum HOM05D004549 ORTHO05D005390 1.8e-57 226.5 212 66.0
Peaxi162Scf00797g00002 Petunia axillaris HOM05D004549 ORTHO05D005390 3.1e-57 225.7 205 67.3
Atru.chr11.2199 Acer truncatum HOM05D004549 ORTHO05D005390 4.1e-57 225.3 209 67.9
FvH4_4g25080 Fragaria vesca HOM05D004549 ORTHO05D005390 5.3e-57 224.9 201 65.7
FAN12G3122 Fragaria x ananassa HOM05D004549 ORTHO05D005390 5.3e-57 224.9 201 65.7
RcHm_v2.0_Chr4g0432261 Rosa chinensis HOM05D004549 ORTHO05D005390 5.3e-57 224.9 203 66.0
FAN22G0462 Fragaria x ananassa HOM05D004549 ORTHO05D005390 6.9e-57 224.6 200 65.5
FAN22G0861 Fragaria x ananassa HOM05D004549 ORTHO05D005390 6.9e-57 224.6 200 65.5
Prupe.1G239600 Prunus persica HOM05D004549 ORTHO05D005390 9.0e-57 224.2 209 68.4
Phvul.002G253700 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 1.5e-56 223.4 200 66.0
CSS0012497 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 2.0e-56 223.0 206 64.6
CAN.G959.23 Capsicum annuum HOM05D004549 ORTHO05D005390 2.6e-56 222.6 209 65.6
MD13G1106700 Malus domestica HOM05D004549 ORTHO05D005390 2.6e-56 222.6 197 69.5
VMungo0251G3559 Vigna mungo HOM05D004549 ORTHO05D005390 3.4e-56 222.2 200 66.0
Cc11_g16230 Coffea canephora HOM05D004549 ORTHO05D005390 1.7e-55 219.9 202 64.4
Glyma.05G172300 Glycine max HOM05D004549 ORTHO05D005390 1.7e-55 219.9 201 67.2
MSTRG.13333 Avicennia marina HOM05D004549 ORTHO05D005390 6.5e-55 218.0 203 62.6
Lalb_Chr11g0075581 Lupinus albus HOM05D004549 ORTHO05D005390 1.4e-54 216.9 218 64.7
PSO478G3953 Papaver somniferum HOM05D004549 ORTHO05D005390 1.4e-54 216.9 210 61.9
Sopen10g028800 Solanum pennellii HOM05D004549 ORTHO05D005390 1.4e-54 216.9 205 65.4
PGSC0003DMG400007201 Solanum tuberosum HOM05D004549 ORTHO05D005390 1.4e-54 216.9 206 65.5
Aqoxy3G01353 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 2.5e-54 216.1 201 63.2
PSO017G6717 Papaver somniferum HOM05D004549 ORTHO05D005390 2.5e-54 216.1 210 61.4
Ca_17796_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 1.2e-53 213.8 202 62.4
Lalb_Chr23g0277771 Lupinus albus HOM05D004549 ORTHO05D005390 1.6e-53 213.4 217 62.7
Medtr3g086230 Medicago truncatula HOM05D004549 ORTHO05D005390 1.6e-53 213.4 205 66.8
PGR102G3304 Punica granatum HOM05D004549 ORTHO05D005390 1.6e-53 213.4 209 66.5
ATR0824G259 Amborella trichopoda HOM05D004549 ORTHO05D005390 3.5e-53 212.2 193 64.2
Sed0000703 Sechium edule HOM05D004549 ORTHO05D005390 3.5e-53 212.2 199 62.8
CANSAT01G2573 Cannabis sativa HOM05D004549 ORTHO05D005390 4.6e-53 211.8 211 62.6
TWI75G1071 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 6.1e-53 211.5 198 62.1
SGA_v2.0_scaffold87G27112 Striga asiatica HOM05D004549 ORTHO05D005390 5.1e-52 208.4 207 62.3
SGA_v2.0_scaffold391G50640 Striga asiatica HOM05D002973 ORTHO05D003383 6.7e-52 208.0 202 61.4
MELO3C011911.2 Cucumis melo HOM05D004549 ORTHO05D005390 3.3e-51 205.7 199 64.8
Migut.E00226 Erythranthe guttata HOM05D004549 ORTHO05D005390 3.3e-51 205.7 199 62.3
CsaV3_5G030690 Cucumis sativus L. HOM05D004549 ORTHO05D005354 1.3e-50 203.8 198 64.1
Lsat_1_v5_gn_3_29100 Lactuca sativa HOM05D004549 ORTHO05D005390 2.8e-50 202.6 201 59.2
Duzib248G1249 Durio zibethinus HOM05D004549 ORTHO05D005390 3.7e-50 202.2 172 69.8
HanXRQChr17g0540101 Helianthus annuus HOM05D004549 ORTHO05D005390 4.8e-50 201.8 201 58.2
ECA246G5237 Erigeron canadensis HOM05D004549 ORTHO05D005390 6.3e-50 201.4 199 60.3
EL10As2g23198 Beta vulgaris HOM05D004549 ORTHO05D005390 1.4e-49 200.3 207 62.3
SalBow8G0177 Salvia bowleyana HOM05D004549 ORTHO05D005390 6.9e-49 198.0 200 58.0
THA.LOC104807755 Tarenaya hassleriana HOM05D004549 ORTHO05D005390 3.4e-48 195.7 201 60.7
Ah.03g133600 Amaranthus hybridus HOM05D004549 ORTHO05D005390 1.3e-47 193.7 208 59.1
CDE08G0789 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 6.5e-47 191.4 204 60.3
BcaB03g15371 Brassica carinata HOM05D004549 ORTHO05D005390 2.5e-46 189.5 214 58.4
CDE06G0408 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 3.2e-46 189.1 207 57.0
Sc11g0000800 Simmondsia chinensis HOM05D004549 ORTHO05D005390 7.2e-46 188.0 198 57.6
Ah.02g130410 Amaranthus hybridus HOM05D004549 ORTHO05D005390 4.6e-45 185.3 204 59.3
AUR62005536 Chenopodium quinoa HOM05D004549 ORTHO05D005390 4.6e-45 185.3 199 57.3
A02p14440 Brassica napus HOM05D004549 ORTHO05D005390 6.1e-45 184.9 212 58.0
C06p38460 Brassica napus HOM05D004549 ORTHO05D005390 6.1e-45 184.9 209 58.4
BolC6t38943H Brassica oleracea HOM05D004549 ORTHO05D005390 6.1e-45 184.9 209 58.4
BcaC03g14868 Brassica carinata HOM05D004549 ORTHO05D005390 1.4e-44 183.7 212 57.5
C02p23390 Brassica napus HOM05D004549 ORTHO05D005390 1.4e-44 183.7 212 57.5
BolC2t08472H Brassica oleracea HOM05D004549 ORTHO05D005390 1.4e-44 183.7 212 57.5
CSS0014809 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 1.4e-44 183.7 201 56.2
A07p32430 Brassica napus HOM05D004549 ORTHO05D005390 1.8e-44 183.3 211 56.9
BraA02t06507Z Brassica rapa HOM05D004549 ORTHO05D005390 1.8e-44 183.3 212 57.5
BraA07t30866Z Brassica rapa HOM05D004549 ORTHO05D005390 1.8e-44 183.3 211 56.9
unitig_744.g24296 Utricularia gibba HOM05D004549 ORTHO05D005390 3.9e-44 182.2 201 56.7
BcaB05g24311 Brassica carinata HOM05D004549 ORTHO05D005390 5.1e-44 181.8 213 55.9
unitig_62.g23660 Utricularia gibba HOM05D004549 ORTHO05D005390 5.1e-44 181.8 202 58.9
CARHR060320 Cardamine hirsuta HOM05D004549 ORTHO05D005390 1.5e-43 180.3 191 56.5
Thhalv10019165m.g Eutrema salsugineum HOM05D004549 ORTHO05D005390 2.0e-43 179.9 212 57.5
AUR62024202 Chenopodium quinoa HOM05D004549 ORTHO05D005390 2.5e-43 179.5 200 57.0
Sp5g22750 Schrenkiella parvula HOM05D004549 ORTHO05D005390 1.1e-41 174.1 209 56.5
BolC6t39200H Brassica oleracea HOM05D004549 ORTHO05D005390 1.4e-41 173.7 207 55.6
BcaC08g46043 Brassica carinata HOM05D004549 ORTHO05D005390 2.4e-41 172.9 181 60.2
BraA07t31058Z Brassica rapa HOM05D004549 ORTHO05D005390 9.1e-41 171.0 203 56.2
A07p34290 Brassica napus HOM05D004549 ORTHO05D005390 1.5e-40 170.2 207 55.6
C06p42290 Brassica napus HOM05D004549 ORTHO05D005390 3.4e-40 169.1 207 55.1
BcaB03g15168 Brassica carinata HOM05D004549 ORTHO05D005390 5.9e-40 168.3 208 53.8
HPP92_017052 Vanilla planifolia HOM05D004549 ORTHO05D005390 7.7e-40 167.9 203 55.2
Aa31LG4G12260 Aethionema arabicum HOM05D004549 ORTHO05D005390 1.0e-39 167.5 205 53.7
SEGI_41357 Sequoiadendron giganteum HOM05D004549 ORTHO05D005390 1.7e-39 166.8 138 63.8
BcaC08g46197 Brassica carinata HOM05D004549 ORTHO05D005390 6.5e-39 164.9 207 54.6
TPR.G35846 Trifolium pratense HOM05D004549 ORTHO05D005390 2.7e-37 159.5 179 63.7
CDE09G1301 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 3.9e-36 155.6 205 51.2
Mapoly0083s0047 Marchantia polymorpha HOM05D004549 ORTHO05D005390 1.1e-35 154.1 171 52.6
AL2G26440 Arabidopsis lyrata HOM05D004549 ORTHO05D005390 8.2e-34 147.9 202 49.5
Carub.0002s1417 Capsella rubella HOM05D004549 ORTHO05D005390 1.4e-33 147.1 202 49.0
Os08g0119800 Oryza sativa ssp. japonica HOM05D004549 ORTHO05D005390 7.0e-33 144.8 115 70.4
Ciclev10022422m.g Citrus clementina HOM05D004549 ORTHO05D005390 2.6e-32 142.9 177 53.7
AT1G67740 Arabidopsis thaliana HOM05D004549 ORTHO05D005390 4.5e-32 142.1 202 48.0
Pp3c23_21280 Physcomitrium patens HOM05D004549 ORTHO05D005390 2.9e-31 139.4 157 50.3
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 1.5e-30 137.1 176 48.9
Pp3c24_20010 Physcomitrium patens HOM05D004549 ORTHO05D005390 3.2e-30 136.0 142 50.7
Pp3c8_24120 Physcomitrium patens HOM05D004549 ORTHO05D005390 4.2e-30 135.6 171 45.0
CBR_g38912 Chara braunii HOM05D004549 ORTHO05D005390 8.0e-29 131.3 167 44.3
Nn3g16614 Nelumbo nucifera HOM05D004549 ORTHO05D005390 5.2e-28 128.6 119 64.7
SMO137G0014 Selaginella moellendorffii HOM05D004549 ORTHO05D005390 1.2e-24 117.5 141 49.6
Sc04g0001060 Simmondsia chinensis HOM05D004549 ORTHO05D005390 3.8e-23 112.5 147 48.3
Medtr2g046810 Medicago truncatula HOM05D004549 ORTHO05D005390 2.5e-22 109.8 154 55.2
Prupe.5G159900 Prunus persica HOM05D004549 ORTHO05D005390 1.0e-20 104.4 129 48.8
Zm00001eb261260 Zea mays HOM05D004549 ORTHO05D005390 3.0e-20 102.8 146 45.9
Zm00001eb173510 Zea mays HOM05D004549 ORTHO05D005390 1.2e-19 100.9 138 47.8
unitig_52.g17185 Utricularia gibba HOM05D004549 ORTHO05D005390 3.1e-17 92.8 78 67.9
RcHm_v2.0_Chr7g0191491 Rosa chinensis HOM05D004549 ORTHO05D005390 9.1e-17 91.3 139 46.8
Ah.08g218300 Amaranthus hybridus HOM05D004549 ORTHO05D005390 2.0e-16 90.1 162 45.1
FAN18G0098 Fragaria x ananassa HOM05D004549 ORTHO05D005390 2.2e-15 86.7 136 44.9
FAN08G1783 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.1e-14 84.3 100 49.0
AUR62001261 Chenopodium quinoa HOM05D004549 ORTHO05D005390 1.5e-14 84.0 122 46.7
PRCOL_00004421 Prasinoderma coloniale HOM05D004549 ORTHO05D005390 2.1e-13 80.1 120 42.5
Solyc10g077120.3 Solanum lycopersicum HOM05D004549 ORTHO05D005390 2.2e-10 70.1 89 52.8
Cre10.g452100 Chlamydomonas reinhardtii HOM05D004549 ORTHO05D005390 4.9e-10 68.9 135 36.3
MCO16G101 Micromonas commoda HOM05D004549 ORTHO05D005390 4.1e-09 65.9 128 37.5


User provided reference genes

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