Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G217750 Glycine max HOM05D000113 ORTHO05D012125 9.9e-63 243.4 136 100.0
Medtr1g010030 Medicago truncatula HOM05D000113 ORTHO05D002571 2.5e-26 122.5 125 67.2
Cfa019308 Carpinus fangiana HOM05D000113 ORTHO05D002571 1.5e-23 113.2 125 62.4
Glyma.01G040900 Glycine max HOM05D000113 ORTHO05D002571 5.0e-22 108.2 123 63.4
Ca_13800_v3 Cicer arietinum L. HOM05D000113 ORTHO05D002571 2.5e-21 105.9 120 59.2
Haze_07691 Corylus avellana HOM05D000113 ORTHO05D002571 2.7e-20 102.4 145 54.5
Manes.13G073000 Manihot esculenta HOM05D000113 ORTHO05D002571 3.6e-20 102.1 127 52.8
Sopen03g034400 Solanum pennellii HOM05D000113 ORTHO05D002571 1.1e-18 97.1 122 52.5
AL4G31370 Arabidopsis lyrata HOM05D000113 ORTHO05D002571 1.5e-18 96.7 134 48.5
PSO013G0399 Papaver somniferum HOM05D000113 ORTHO05D012125 1.5e-18 96.7 120 53.3
AL1G46740 Arabidopsis lyrata HOM05D000113 ORTHO05D002571 1.7e-17 93.2 120 52.5
Cfa004955 Carpinus fangiana HOM05D000113 ORTHO05D002571 3.7e-17 92.0 135 51.1
unitig_8.g2956 Utricularia gibba HOM05D000113 ORTHO05D002571 6.3e-17 91.3 120 50.8
ECA232G2775 Erigeron canadensis HOM05D000113 ORTHO05D002571 8.2e-17 90.9 122 52.5
Nitab4.5_0001410g0130 Nicotiana tabacum HOM05D000113 ORTHO05D002571 8.2e-17 90.9 121 51.2
AT1G32490 Arabidopsis thaliana HOM05D000113 ORTHO05D002571 1.8e-16 89.7 120 52.5
Lalb_Chr13g0294241 Lupinus albus HOM05D000113 ORTHO05D002571 4.1e-16 88.6 128 51.6
PSO063G4203 Papaver somniferum HOM05D000113 ORTHO05D002571 6.9e-16 87.8 119 52.1
Glyma.06G201700 Glycine max HOM05D000113 ORTHO05D002571 1.2e-15 87.0 120 55.0
arahy.Tifrunner.gnm1.ann1.U2PNLV Arachis hypogaea HOM05D000113 ORTHO05D002571 1.5e-15 86.7 65 83.1
AT2G35340 Arabidopsis thaliana HOM05D000113 ORTHO05D002571 3.4e-15 85.5 133 45.1
DCAR_021511 Daucus carota HOM05D000113 ORTHO05D002571 1.3e-14 83.6 120 47.5
Eucgr.K02504 Eucalyptus grandis HOM05D000113 ORTHO05D012125 2.9e-14 82.4 121 48.8
arahy.Tifrunner.gnm1.ann1.LUB4JJ Arachis hypogaea HOM05D000113 ORTHO05D002571 5.0e-14 81.6 123 53.7
Thhalv10006650m.g Eutrema salsugineum HOM05D000113 ORTHO05D002571 2.5e-13 79.3 84 60.7
Gohir.A12G181200 Gossypium hirsutum HOM05D000113 ORTHO05D002571 3.2e-13 79.0 126 44.4
Gohir.D12G183900 Gossypium hirsutum HOM05D000113 ORTHO05D002571 4.2e-13 78.6 126 43.7
PSO409G0035 Papaver somniferum HOM05D000113 ORTHO05D002571 7.2e-13 77.8 119 47.1
CARHR031940 Cardamine hirsuta HOM05D000113 ORTHO05D002571 2.1e-12 76.3 120 46.7
Thhalv10017881m.g Eutrema salsugineum HOM05D000113 ORTHO05D002571 2.7e-12 75.9 133 44.4
Carub.0001s3090 Capsella rubella HOM05D000113 ORTHO05D002571 4.7e-12 75.1 120 45.8
Haze_02454 Corylus avellana HOM05D000113 ORTHO05D002571 6.1e-12 74.7 120 50.8
TWI73G0006 Tripterygium wilfordii HOM05D000113 ORTHO05D002571 7.9e-12 74.3 125 47.2
Lj5C105T19 Lonicera japonica HOM05D000113 ORTHO05D002571 2.3e-11 72.8 59 76.3
Sabra15G0050000 Salix brachista HOM05D000113 ORTHO05D002571 2.3e-11 72.8 122 46.7
TWI81G1049 Tripterygium wilfordii HOM05D000113 ORTHO05D002571 2.0e-10 69.7 126 44.4
Aa31LG7G6920 Aethionema arabicum HOM05D000113 ORTHO05D002571 3.3e-10 68.9 121 45.5
Sp1g28410 Schrenkiella parvula HOM05D000113 ORTHO05D002571 3.3e-10 68.9 120 45.0
PGSC0003DMG402024649 Solanum tuberosum HOM05D000113 ORTHO05D002571 4.4e-10 68.6 122 41.8
SGA_v2.0_scaffold1221G53867 Striga asiatica HOM05D000113 ORTHO05D012125 5.7e-10 68.2 111 44.1
Dinv38794 Davidia involucrata HOM05D000113 ORTHO05D002571 1.7e-09 66.6 123 46.3
Gorai.008G197200 Gossypium raimondii HOM05D000113 ORTHO05D002571 1.7e-09 66.6 126 39.7
RcHm_v2.0_Chr2g0092491 Rosa chinensis HOM05D000113 ORTHO05D002571 1.7e-09 66.6 118 44.9
Aa31LG7G3740 Aethionema arabicum HOM05D000113 ORTHO05D002571 3.7e-09 65.5 122 49.2
PGR044G1093 Punica granatum HOM05D000113 ORTHO05D002571 4.8e-09 65.1 128 44.5
Prupe.5G201700 Prunus persica HOM05D000113 ORTHO05D002571 6.3e-09 64.7 120 41.7
Carub.0004s1703 Capsella rubella HOM05D000113 ORTHO05D002571 1.1e-08 63.9 75 53.3
Aqoxy3G03585 Aquilegia oxysepala HOM05D000113 ORTHO05D002571 1.4e-08 63.5 123 40.7
Sp4g17550 Schrenkiella parvula HOM05D000113 ORTHO05D002571 1.4e-08 63.5 78 50.0
AL7G28140 Arabidopsis lyrata HOM05D000113 ORTHO05D002571 3.1e-08 62.4 122 44.3
Prupe.8G103900 Prunus persica HOM05D000113 ORTHO05D002571 3.1e-08 62.4 81 58.0
Lj6g0016007 Lotus japonicus HOM05D000113 ORTHO05D002571 7.0e-08 61.2 35 94.3
Psat0s3790g0040 Pisum sativum HOM05D000113 ORTHO05D002571 7.0e-08 61.2 38 89.5
HanXRQChr09g0270171 Helianthus annuus HOM05D000113 ORTHO05D002571 9.1e-08 60.8 59 59.3
Phvul.009G193400 Phaseolus vulgaris HOM05D000113 ORTHO05D002571 9.1e-08 60.8 35 94.3
MELO3C017216.2 Cucumis melo HOM05D000113 ORTHO05D002571 1.2e-07 60.5 121 42.1
Sabra15G0006800 Salix brachista HOM05D000113 ORTHO05D002571 1.2e-07 60.5 123 40.7
HPP92_010044 Vanilla planifolia HOM05D000113 ORTHO05D002571 2.0e-07 59.7 119 37.8
VMungo1127G1561 Vigna mungo HOM05D000113 ORTHO05D002571 2.0e-07 59.7 50 70.0
Sed0009402 Sechium edule HOM05D000113 ORTHO05D002571 2.6e-07 59.3 121 41.3
FAN18G0690 Fragaria x ananassa HOM05D000113 ORTHO05D002571 5.9e-07 58.2 42 78.6
FAN23G0734 Fragaria x ananassa HOM05D000113 ORTHO05D002571 5.9e-07 58.2 131 39.7
Ca_23233_v3 Cicer arietinum L. HOM05D000113 ORTHO05D002571 1.0e-06 57.4 59 69.5
GSVIVG01007911001 Vitis vinifera HOM05D000113 ORTHO05D002571 1.0e-06 57.4 41 78.0
Cc04_g15020 Coffea canephora HOM05D000113 ORTHO05D002571 1.3e-06 57.0 59 61.0
FvH4_5g14240 Fragaria vesca HOM05D000113 ORTHO05D002571 1.3e-06 57.0 42 76.2
Lsat_1_v5_gn_6_69341 Lactuca sativa HOM05D000113 ORTHO05D002571 1.3e-06 57.0 59 57.6
AUR62002552 Chenopodium quinoa HOM05D000113 ORTHO05D002571 1.7e-06 56.6 48 66.7
TAR374G0746 Trochodendron aralioides HOM05D000113 ORTHO05D002571 1.7e-06 56.6 120 42.5
Medtr3g023880 Medicago truncatula HOM05D000113 ORTHO05D002571 2.2e-06 56.2 34 91.2
Oeu008272.2 Olea europaea HOM05D000113 ORTHO05D002571 2.2e-06 56.2 50 72.0
TPR.G12156 Trifolium pratense HOM05D000113 ORTHO05D002571 2.2e-06 56.2 43 81.4
Lsat_1_v5_gn_9_24861 Lactuca sativa HOM05D000113 ORTHO05D002571 3.8e-06 55.5 125 40.0
Solyc03g115390.4 Solanum lycopersicum HOM05D000113 ORTHO05D002571 5.0e-06 55.1 37 81.1
Nitab4.5_0004284g0070 Nicotiana tabacum HOM05D000113 ORTHO05D002571 8.5e-06 54.3 37 78.4


User provided reference genes

Program Settings