Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G073500 Glycine max HOM05D005272 ORTHO05D006890 4.3e-98 361.3 178 100.0
Glyma.01G169800 Glycine max HOM05D005272 ORTHO05D006890 4.2e-53 211.8 478 34.9
Phvul.005G099900 Phaseolus vulgaris HOM05D005272 ORTHO05D006890 5.6e-50 201.4 479 33.2
VMungo1215G0635 Vigna mungo HOM05D005272 ORTHO05D006890 5.3e-48 194.9 479 32.2
Lj2g0009312 Lotus japonicus HOM05D005272 ORTHO05D006890 9.3e-45 184.1 478 31.8
Lalb_Chr09g0322041 Lupinus albus HOM05D005272 ORTHO05D006890 5.1e-43 178.3 114 77.2
arahy.Tifrunner.gnm1.ann1.4MV4X2 Arachis hypogaea HOM05D005272 ORTHO05D006890 8.7e-43 177.6 460 31.3
arahy.Tifrunner.gnm1.ann1.CVF5QE Arachis hypogaea HOM05D005272 ORTHO05D006890 8.7e-43 177.6 460 31.3
TPR.G2387 Trifolium pratense HOM05D005272 ORTHO05D006890 8.7e-43 177.6 479 30.5
Medtr5g021240 Medicago truncatula HOM05D005272 ORTHO05D006890 1.1e-42 177.2 479 30.7
Ca_24889_v3 Cicer arietinum L. HOM05D005272 ORTHO05D006890 1.9e-42 176.4 479 29.9
Potri.007G018600 Populus trichocarpa HOM05D005272 ORTHO05D006890 1.3e-38 163.7 478 29.1
Cpa.g.sc6.186 Carica papaya HOM05D005272 ORTHO05D006890 2.9e-38 162.5 447 29.1
Duzib187G1472 Durio zibethinus HOM05D005272 ORTHO05D006890 4.9e-38 161.8 425 30.8
FAN19G2225 Fragaria x ananassa HOM05D005272 ORTHO05D006890 4.9e-38 161.8 131 60.3
FAN26G2090 Fragaria x ananassa HOM05D005272 ORTHO05D006890 1.9e-37 159.8 115 65.2
FvH4_1g12310 Fragaria vesca HOM05D005272 ORTHO05D006890 5.5e-37 158.3 115 65.2
Manes.01G140700 Manihot esculenta HOM05D005272 ORTHO05D006890 5.5e-37 158.3 474 28.5
RcHm_v2.0_Chr2g0100131 Rosa chinensis HOM05D005272 ORTHO05D006890 9.3e-37 157.5 115 66.1
Haze_03835 Corylus avellana HOM05D005272 ORTHO05D006890 1.2e-36 157.1 115 65.2
Sabra07G0015700 Salix brachista HOM05D005272 ORTHO05D006890 2.1e-36 156.4 478 28.2
Thecc.01G026600 Theobroma cacao HOM05D005272 ORTHO05D006890 2.1e-36 156.4 111 69.4
Gohir.D10G091400 Gossypium hirsutum HOM05D005272 ORTHO05D006890 6.0e-36 154.8 475 28.6
Gorai.011G100400 Gossypium raimondii HOM05D005272 ORTHO05D006890 6.0e-36 154.8 111 68.5
FAN28G0729 Fragaria x ananassa HOM05D005272 ORTHO05D006890 7.9e-36 154.5 111 65.8
Gohir.A10G096700 Gossypium hirsutum HOM05D005272 ORTHO05D006890 7.9e-36 154.5 475 28.4
MD15G1251700 Malus domestica HOM05D005272 ORTHO05D006890 1.8e-35 153.3 115 64.3
QL10p007431 Quercus lobata HOM05D005272 ORTHO05D006890 2.3e-35 152.9 475 26.9
Eucgr.I02388 Eucalyptus grandis HOM05D005272 ORTHO05D006890 3.0e-35 152.5 115 63.5
QL06p034856 Quercus lobata HOM05D005272 ORTHO05D006890 3.0e-35 152.5 474 27.0
FAN23G1388 Fragaria x ananassa HOM05D005272 ORTHO05D006890 5.1e-35 151.8 115 62.6
CANSAT01G2901 Cannabis sativa HOM05D005272 ORTHO05D006890 6.7e-35 151.4 110 67.3
MELO3C016408.2 Cucumis melo HOM05D005272 ORTHO05D006890 8.7e-35 151.0 115 62.6
CsaV3_4G005410 Cucumis sativus L. HOM05D005272 ORTHO05D006890 8.7e-35 151.0 115 62.6
Lj4A210T35 Lonicera japonica HOM05D005272 ORTHO05D006890 1.1e-34 150.6 111 66.7
Nn1g05787 Nelumbo nucifera HOM05D005272 ORTHO05D006890 1.5e-34 150.2 115 64.3
Eucgr.I02389 Eucalyptus grandis HOM05D005272 ORTHO05D006890 1.9e-34 149.8 113 62.8
QL06p034836 Quercus lobata HOM05D005272 ORTHO05D006890 5.7e-34 148.3 472 27.3
QL10p007416 Quercus lobata HOM05D005272 ORTHO05D006890 5.7e-34 148.3 472 27.3
Sc03g0003260 Simmondsia chinensis HOM05D005272 ORTHO05D006890 5.7e-34 148.3 111 63.1
Hma1.2p1_1114F.1_g258750 Hydrangea macrophylla HOM05D005272 ORTHO05D006890 9.7e-34 147.5 115 60.9
Hma1.2p1_1114F.1_g258760 Hydrangea macrophylla HOM05D005272 ORTHO05D006890 9.7e-34 147.5 115 60.9
PGR119G0710 Punica granatum HOM05D005272 ORTHO05D006890 1.3e-33 147.1 114 61.4
TWI60G1562 Tripterygium wilfordii HOM05D005272 ORTHO05D006890 1.3e-33 147.1 112 62.5
Atru.chr3.734 Acer truncatum HOM05D005272 ORTHO05D006890 2.8e-33 146.0 474 27.8
ClCG07G008770 Citrullus lanatus HOM05D005272 ORTHO05D006890 2.8e-33 146.0 115 61.7
Duzib187G0781 Durio zibethinus HOM05D005272 ORTHO05D006890 2.8e-33 146.0 86 77.9
THA.LOC104807474 Tarenaya hassleriana HOM05D005272 ORTHO05D006890 2.8e-33 146.0 114 60.5
Aa31LG6G13200 Aethionema arabicum HOM05D005272 ORTHO05D006890 3.7e-33 145.6 115 60.0
Lsat_1_v5_gn_2_78121 Lactuca sativa HOM05D005272 ORTHO05D006890 3.7e-33 145.6 111 64.9
Sp7g34060 Schrenkiella parvula HOM05D005272 ORTHO05D006890 3.7e-33 145.6 114 60.5
Psat0s3355g0080 Pisum sativum HOM05D005272 ORTHO05D006890 4.8e-33 145.2 117 67.5
MBI04_g26283_MAGBIO Magnolia biondii HOM05D005272 ORTHO05D006890 6.3e-33 144.8 115 63.5
Rhsim04G0168600 Rhododendron simsii HOM05D005272 ORTHO05D006890 6.3e-33 144.8 111 65.8
Hund16459 Selenicereus undatus HOM05D005272 ORTHO05D006890 6.3e-33 144.8 111 63.1
TAR381G0099 Trochodendron aralioides HOM05D005272 ORTHO05D006890 8.2e-33 144.4 114 60.5
vmacro01069 Vaccinium macrocarpon HOM05D005272 ORTHO05D006890 1.1e-32 144.1 111 64.0
Thhalv10024815m.g Eutrema salsugineum HOM05D005272 ORTHO05D006890 1.4e-32 143.7 114 58.8
Solyc02g062430.3 Solanum lycopersicum HOM05D005272 ORTHO05D006890 1.4e-32 143.7 114 63.2
CARHR244730 Cardamine hirsuta HOM05D005272 ORTHO05D006890 1.8e-32 143.3 111 62.2
Sopen02g013430 Solanum pennellii HOM05D005272 ORTHO05D006890 2.4e-32 142.9 114 63.2
Ciclev10025317m.g Citrus clementina HOM05D005272 ORTHO05D006890 3.1e-32 142.5 475 27.2
C07p61680 Brassica napus HOM05D005272 ORTHO05D006890 4.1e-32 142.1 114 59.6
CAN.G408.3 Capsicum annuum HOM05D005272 ORTHO05D006890 4.1e-32 142.1 113 63.7
AT4G36400 Arabidopsis thaliana HOM05D005272 ORTHO05D006890 5.3e-32 141.7 114 61.4
HPP92_017497 Vanilla planifolia HOM05D005272 ORTHO05D006890 5.3e-32 141.7 112 61.6
HPP92_017514 Vanilla planifolia HOM05D005272 ORTHO05D006890 5.3e-32 141.7 112 61.6
Peaxi162Scf01079g00214 Petunia axillaris HOM05D005272 ORTHO05D006890 6.9e-32 141.4 111 64.9
AL7G14690 Arabidopsis lyrata HOM05D005272 ORTHO05D006890 9.0e-32 141.0 114 58.8
Nitab4.5_0009648g0010 Nicotiana tabacum HOM05D005272 ORTHO05D006890 9.0e-32 141.0 111 64.9
Carub.0007s0391 Capsella rubella HOM05D005272 ORTHO05D006890 2.0e-31 139.8 114 58.8
PSO170G5749 Papaver somniferum HOM05D005272 ORTHO05D006890 2.0e-31 139.8 111 60.4
Psat0s3355g0040 Pisum sativum HOM05D005272 ORTHO05D006890 2.6e-31 139.4 76 86.8
Sed0020582 Sechium edule HOM05D005272 ORTHO05D006890 2.6e-31 139.4 115 59.1
BolC7t46592H Brassica oleracea HOM05D005272 ORTHO05D006890 5.9e-31 138.3 115 61.7
HanXRQChr07g0190391 Helianthus annuus HOM05D005272 ORTHO05D006890 5.9e-31 138.3 111 59.5
A03p64220 Brassica napus HOM05D005272 ORTHO05D006890 1.0e-30 137.5 115 60.9
BraA03t15492Z Brassica rapa HOM05D005272 ORTHO05D006890 1.0e-30 137.5 115 60.9
Migut.H02506 Erythranthe guttata HOM05D005272 ORTHO05D006890 1.0e-30 137.5 109 63.3
SalBow8G2913 Salvia bowleyana HOM05D005272 ORTHO05D006890 1.0e-30 137.5 110 60.9
Nitab4.5_0000136g0150 Nicotiana tabacum HOM05D005272 ORTHO05D006890 1.3e-30 137.1 111 62.2
MSTRG.23263 Avicennia marina HOM05D005272 ORTHO05D006890 1.7e-30 136.7 115 60.0
Aqoxy5G01527 Aquilegia oxysepala HOM05D005272 ORTHO05D006890 2.2e-30 136.3 111 60.4
AUR62004113 Chenopodium quinoa HOM05D005272 ORTHO05D006890 2.2e-30 136.3 110 58.2
AUR62007628 Chenopodium quinoa HOM05D005272 ORTHO05D006890 2.2e-30 136.3 111 58.6
ATR0665G208 Amborella trichopoda HOM05D005272 ORTHO05D006890 2.9e-30 136.0 114 61.4
Os07g0187200 Oryza sativa ssp. japonica HOM05D005272 ORTHO05D006890 3.8e-30 135.6 114 59.6
unitig_899.g14634 Utricularia gibba HOM05D001473 ORTHO05D003900 8.5e-30 134.4 115 58.3
Ah.03g141530 Amaranthus hybridus HOM05D005272 ORTHO05D006890 1.1e-29 134.0 110 56.4
Pp3c26_11820 Physcomitrium patens HOM05D005272 ORTHO05D006890 1.1e-29 134.0 111 57.7
Cc07_g10150 Coffea canephora HOM05D005272 ORTHO05D006890 1.4e-29 133.7 115 58.3
CDE07G0649 Ceratophyllum demersum HOM05D005272 ORTHO05D006890 3.2e-29 132.5 115 55.7
EL10As8g23880 Beta vulgaris HOM05D005272 ORTHO05D006890 4.2e-29 132.1 111 55.9
Phvul.002G112400 Phaseolus vulgaris HOM05D005272 ORTHO05D006890 4.2e-29 132.1 72 84.7
SEGI_27168 Sequoiadendron giganteum HOM05D005272 ORTHO05D006890 5.5e-29 131.7 114 56.1
AagrBONN_evm.TU.Sc2ySwM_344.3428 Anthoceros agrestis HOM05D005272 ORTHO05D006890 1.6e-28 130.2 112 56.2
BcaB01g01720 Brassica carinata HOM05D005272 ORTHO05D006573 3.6e-28 129.0 109 59.6
CiPaw.07G053400 Carya illinoinensis HOM05D005272 ORTHO05D006890 6.1e-28 128.3 73 82.2
Rhsim13G0235800 Rhododendron simsii HOM05D005272 ORTHO05D006890 7.9e-28 127.9 460 27.2
Dinv05203 Davidia involucrata HOM05D005272 ORTHO05D006890 1.8e-27 126.7 74 83.8
SGA_v2.0_scaffold102G29916 Striga asiatica HOM05D005272 ORTHO05D006890 3.0e-27 125.9 135 52.6
SMO364G0024 Selaginella moellendorffii HOM05D005272 ORTHO05D006890 8.8e-27 124.4 114 51.8
Prupe.7G162700 Prunus persica HOM05D005272 ORTHO05D006890 1.9e-26 123.2 76 80.3
PGSC0003DMG400015514 Solanum tuberosum HOM05D005272 ORTHO05D006890 5.7e-26 121.7 75 77.3
GSVIVG01018859001 Vitis vinifera HOM05D005272 ORTHO05D006890 5.7e-26 121.7 75 78.7
CSS0024741 Camellia sinensis var. sinensis HOM05D005272 ORTHO05D006890 9.7e-26 120.9 76 76.3
Cc07_g10140 Coffea canephora HOM05D005272 ORTHO05D006890 9.7e-26 120.9 75 78.7
CSS0036481 Camellia sinensis var. sinensis HOM05D005272 ORTHO05D006890 4.8e-25 118.6 76 75.0
ECA238G0324 Erigeron canadensis HOM05D005272 ORTHO05D006890 1.1e-24 117.5 76 73.7
PGR119G2315 Punica granatum HOM05D005272 ORTHO05D006890 1.1e-24 117.5 101 61.4
Zm00001eb302200 Zea mays HOM05D005272 ORTHO05D006890 4.1e-24 115.5 74 74.3
Cre08.g370550 Chlamydomonas reinhardtii HOM05D005272 ORTHO05D006890 6.9e-24 114.8 112 44.6
CBR_g3549 Chara braunii HOM05D005272 ORTHO05D006890 2.2e-22 109.8 109 45.9
DCAR_017317 Daucus carota HOM05D005272 ORTHO05D006890 2.9e-22 109.4 75 68.0
SEGI_12840 Sequoiadendron giganteum HOM05D005272 ORTHO05D006890 2.7e-20 102.8 70 70.0
Mapoly0113s0062 Marchantia polymorpha HOM05D005272 ORTHO05D006890 1.4e-19 100.5 70 67.1
unitig_899.g14635 Utricularia gibba HOM05D005272 ORTHO05D006890 1.4e-19 100.5 100 54.0
Cfa023942 Carpinus fangiana HOM05D005272 ORTHO05D006890 1.8e-19 100.1 113 45.1
MCO05G403 Micromonas commoda HOM05D005272 ORTHO05D006890 1.7e-17 93.6 119 41.2
PRCOL_00001074 Prasinoderma coloniale HOM05D005272 ORTHO05D006890 1.4e-16 90.5 67 58.2
vmacro14062 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 2.4e-16 89.7 68 60.3
Dinv05205 Davidia involucrata HOM05D005272 ORTHO05D006890 6.9e-16 88.2 47 85.1
arahy.Tifrunner.gnm1.ann1.38E01X Arachis hypogaea HOM05D005272 ORTHO05D006890 9.1e-16 87.8 66 69.7
Rhsim09G0214800 Rhododendron simsii HOM05D005272 ORTHO05D006890 9.1e-16 87.8 67 61.2
COL.COLO4_21995 Corchorus olitorius HOM05D005272 ORTHO05D002654 5.9e-15 85.1 73 63.0
Ah.03g141540 Amaranthus hybridus HOM05D005272 ORTHO05D006890 9.4e-13 77.8 47 76.6
SMO364G0343 Selaginella moellendorffii HOM05D005272 ORTHO05D006890 2.1e-12 76.6 66 53.0
Psat3g045240 Pisum sativum HOM05D005272 ORTHO05D006890 2.3e-11 73.2 51 74.5
Lj7A110T24 Lonicera japonica HOM05D005272 ORTHO05D006890 5.0e-06 55.5 83 47.0


User provided reference genes

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