Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G059700 Glycine max HOM05D005480 ORTHO05D006735 6.5e-199 697.6 463 100.0
Glyma.01G181500 Glycine max HOM05D005480 ORTHO05D006735 1.0e-180 637.1 419 86.4
VMungo1215G2543 Vigna mungo HOM05D005480 ORTHO05D006735 2.0e-176 622.9 486 82.5
Phvul.002G022500 Phaseolus vulgaris HOM05D005480 ORTHO05D006735 1.2e-171 607.1 405 87.2
TPR.G11349 Trifolium pratense HOM05D005480 ORTHO05D006735 1.3e-162 577.0 411 83.2
Lalb_Chr09g0322931 Lupinus albus HOM05D005480 ORTHO05D006735 1.6e-160 570.1 489 83.2
Lj2g0021055 Lotus japonicus HOM05D005480 ORTHO05D006735 8.1e-157 557.8 329 89.1
Medtr5g018390 Medicago truncatula HOM05D005480 ORTHO05D006735 6.8e-156 554.7 431 72.4
Psat2g164160 Pisum sativum HOM05D005480 ORTHO05D006735 6.8e-156 554.7 419 79.7
arahy.Tifrunner.gnm1.ann1.E9URZA Arachis hypogaea HOM05D005480 ORTHO05D006735 4.6e-152 542.0 399 84.0
Thecc.01G048100 Theobroma cacao HOM05D005480 ORTHO05D006735 1.1e-148 530.8 492 72.4
QL06p043724 Quercus lobata HOM05D005480 ORTHO05D006735 1.7e-143 513.5 511 68.3
Prupe.7G142300 Prunus persica HOM05D005480 ORTHO05D006735 1.9e-142 510.0 337 81.3
Eucgr.H01972 Eucalyptus grandis HOM05D005480 ORTHO05D006735 2.5e-142 509.6 435 68.3
Dinv26753 Davidia involucrata HOM05D005480 ORTHO05D006735 8.1e-141 504.6 332 81.0
Gohir.A12G068600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 1.1e-140 504.2 423 67.1
Duzib187G0998 Durio zibethinus HOM05D005480 ORTHO05D006735 3.1e-140 502.7 493 70.6
Manes.13G130100 Manihot esculenta HOM05D005480 ORTHO05D006735 3.1e-140 502.7 401 73.1
Ciclev10025487m.g Citrus clementina HOM05D005480 ORTHO05D006735 5.2e-140 501.9 404 79.2
Potri.007G036600 Populus trichocarpa HOM05D005480 ORTHO05D006735 1.5e-139 500.4 425 70.8
Gohir.D12G090600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 4.4e-139 498.8 423 66.4
Dinv39906 Davidia involucrata HOM05D005480 ORTHO05D006735 2.2e-138 496.5 338 77.5
CSS0014684 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 6.4e-138 495.0 417 65.9
Duzib147G0741 Durio zibethinus HOM05D005480 ORTHO05D006735 1.1e-137 494.2 422 69.2
Gorai.008G072400 Gossypium raimondii HOM05D005480 ORTHO05D006735 4.2e-137 492.3 423 66.9
MD02G1161300 Malus domestica HOM05D005480 ORTHO05D006735 5.4e-137 491.9 341 78.6
CiPaw.01G026500 Carya illinoinensis HOM05D005480 ORTHO05D006735 1.2e-136 490.7 405 76.5
PGR102G0042 Punica granatum HOM05D005480 ORTHO05D006735 1.0e-135 487.6 411 75.9
Actinidia12077 Actinidia chinensis HOM05D005480 ORTHO05D006735 2.3e-135 486.5 331 76.4
Rhsim02G0168000 Rhododendron simsii HOM05D005480 ORTHO05D006735 2.3e-135 486.5 330 74.5
Lj7A20T61 Lonicera japonica HOM05D005480 ORTHO05D006735 3.0e-135 486.1 332 78.3
Lj7A18T44 Lonicera japonica HOM05D005480 ORTHO05D006735 3.9e-135 485.7 332 78.0
FAN19G1500 Fragaria x ananassa HOM05D005480 ORTHO05D006735 5.1e-135 485.3 307 81.8
FvH4_1g14810 Fragaria vesca HOM05D005480 ORTHO05D006735 5.6e-134 481.9 306 81.4
FAN23G2977 Fragaria x ananassa HOM05D005480 ORTHO05D006735 9.6e-134 481.1 303 81.8
MD15G1275400 Malus domestica HOM05D005480 ORTHO05D006735 9.6e-134 481.1 393 72.3
MELO3C007529.2 Cucumis melo HOM05D005480 ORTHO05D006735 1.6e-133 480.3 496 65.3
CsaV3_6G042900 Cucumis sativus L. HOM05D005480 ORTHO05D006735 1.1e-132 477.6 503 63.4
FAN28G0426 Fragaria x ananassa HOM05D005480 ORTHO05D006735 3.1e-132 476.1 306 80.7
TAR381G0420 Trochodendron aralioides HOM05D005480 ORTHO05D006735 4.0e-132 475.7 354 72.6
RcHm_v2.0_Chr2g0103771 Rosa chinensis HOM05D005480 ORTHO05D006735 6.9e-132 474.9 420 65.0
Sopen02g034920 Solanum pennellii HOM05D005480 ORTHO05D006735 6.9e-132 474.9 329 75.1
Solyc02g090230.4 Solanum lycopersicum HOM05D005480 ORTHO05D006735 1.2e-131 474.2 330 74.5
CSS0005424 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 1.5e-131 473.8 417 64.3
Sed0026694 Sechium edule HOM05D005480 ORTHO05D006735 2.0e-131 473.4 502 66.3
DCAR_021432 Daucus carota HOM05D005480 ORTHO05D006735 4.4e-131 472.2 336 75.0
CANSAT01G1679 Cannabis sativa HOM05D005480 ORTHO05D006735 2.2e-130 469.9 431 67.7
THA.LOC104819823 Tarenaya hassleriana HOM05D005480 ORTHO05D006735 8.4e-130 468.0 407 69.8
PGSC0003DMG400010074 Solanum tuberosum HOM05D005480 ORTHO05D006735 1.1e-129 467.6 334 73.4
Cc07_g05560 Coffea canephora HOM05D005480 ORTHO05D006735 2.4e-129 466.5 336 75.6
Cfa004218 Carpinus fangiana HOM05D005480 ORTHO05D006735 4.2e-129 465.7 302 81.8
Sc03g0001260 Simmondsia chinensis HOM05D005480 ORTHO05D006735 5.4e-129 465.3 339 72.6
FAN26G2127 Fragaria x ananassa HOM05D005480 ORTHO05D006735 7.1e-129 464.9 306 79.4
TAR625G1062 Trochodendron aralioides HOM05D005480 ORTHO05D006735 1.2e-128 464.2 348 73.0
ClCG01G016580 Citrullus lanatus HOM05D005480 ORTHO05D006735 6.0e-128 461.8 476 56.9
Hma1.2p1_0546F.1_g176180 Hydrangea macrophylla HOM05D005480 ORTHO05D006735 7.9e-128 461.5 426 63.4
Aqoxy5G01417 Aquilegia oxysepala HOM05D005480 ORTHO05D006735 1.1e-124 451.1 334 71.6
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.4e-124 450.7 338 70.1
COL.COLO4_11327 Corchorus olitorius HOM05D005480 ORTHO05D006735 2.4e-124 449.9 308 78.2
Nn6g32121 Nelumbo nucifera HOM05D005480 ORTHO05D006735 3.1e-124 449.5 331 73.1
PSO170G5089 Papaver somniferum HOM05D005480 ORTHO05D006735 5.3e-124 448.7 335 71.6
ECA232G3160 Erigeron canadensis HOM05D005480 ORTHO05D006735 2.0e-123 446.8 336 72.9
PSO210G7251 Papaver somniferum HOM05D005480 ORTHO05D006735 3.4e-123 446.0 335 71.3
SGA_v2.0_scaffold15G07231 Striga asiatica HOM05D005480 ORTHO05D006735 1.3e-122 444.1 398 68.6
Carub.0007s0332 Capsella rubella HOM05D005480 ORTHO05D006735 2.2e-122 443.4 419 63.5
Hund13586 Selenicereus undatus HOM05D005480 ORTHO05D006735 2.2e-122 443.4 337 69.4
MSTRG.23794 Avicennia marina HOM05D005480 ORTHO05D006735 8.4e-122 441.4 309 73.8
Thhalv10025060m.g Eutrema salsugineum HOM05D005480 ORTHO05D006735 1.4e-121 440.7 486 63.4
Migut.H00485 Erythranthe guttata HOM05D005480 ORTHO05D006735 1.6e-120 437.2 334 69.5
Sp7g34650 Schrenkiella parvula HOM05D005480 ORTHO05D006735 4.6e-120 435.6 422 67.8
HanXRQChr04g0123741 Helianthus annuus HOM05D005480 ORTHO05D006735 3.0e-119 433.0 404 67.6
Ca_24802_v3 Cicer arietinum L. HOM05D005480 ORTHO05D006735 5.1e-119 432.2 354 76.0
Peaxi162Scf00993g00022 Petunia axillaris HOM05D005480 ORTHO05D006735 1.3e-117 427.6 296 76.0
Sabra07G0032600 Salix brachista HOM05D005480 ORTHO05D006735 1.4e-116 424.1 297 76.8
AL7G13910 Arabidopsis lyrata HOM05D005480 ORTHO05D006735 4.5e-115 419.1 334 68.3
vmacro05295 Vaccinium macrocarpon HOM05D005480 ORTHO05D006735 4.5e-115 419.1 301 73.1
AT4G37130 Arabidopsis thaliana HOM05D005480 ORTHO05D006735 7.6e-115 418.3 424 64.6
ATR0733G143 Amborella trichopoda HOM05D005480 ORTHO05D006735 1.7e-114 417.2 338 65.4
MBI16_g19897_MAGBIO Magnolia biondii HOM05D005480 ORTHO05D006735 1.2e-112 411.0 405 63.2
Aa31LG6G13860 Aethionema arabicum HOM05D005480 ORTHO05D006735 1.6e-112 410.6 333 66.7
BraA01t00184Z Brassica rapa HOM05D005480 ORTHO05D006735 2.1e-112 410.2 496 58.3
Lsat_1_v5_gn_4_179460 Lactuca sativa HOM05D005480 ORTHO05D006735 2.7e-112 409.8 339 66.1
arahy.Tifrunner.gnm1.ann1.HXIH5S Arachis hypogaea HOM05D005480 ORTHO05D006735 4.6e-112 409.1 285 80.4
A01p01950 Brassica napus HOM05D005480 ORTHO05D006735 6.0e-112 408.7 493 58.2
CARHR245380 Cardamine hirsuta HOM05D005480 ORTHO05D006735 1.3e-111 407.5 337 67.1
CAN.G836.34 Capsicum annuum HOM05D005480 ORTHO05D006735 1.6e-109 400.6 308 70.1
unitig_899.g14972 Utricularia gibba HOM05D005480 ORTHO05D006735 1.8e-108 397.1 373 61.7
Nitab4.5_0001014g0070 Nicotiana tabacum HOM05D005480 ORTHO05D006735 1.5e-107 394.0 278 73.7
Nitab4.5_0000108g0300 Nicotiana tabacum HOM05D005480 ORTHO05D006735 2.0e-107 393.7 278 74.1
BcaNung03510 Brassica carinata HOM05D005480 ORTHO05D006735 4.5e-107 392.5 500 60.2
CDE02G2721 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 1.7e-106 390.6 289 68.9
Lalb_Chr05g0213141 Lupinus albus HOM05D005480 ORTHO05D006735 2.2e-106 390.2 251 81.7
Haze_15193 Corylus avellana HOM05D005480 ORTHO05D006735 2.9e-106 389.8 260 80.0
SHI08751 Sapria himalayana HOM05D005480 ORTHO05D006735 3.8e-106 389.4 335 64.2
AUR62003828 Chenopodium quinoa HOM05D005480 ORTHO05D006735 1.9e-105 387.1 300 68.3
BolC1t00204H Brassica oleracea HOM05D005480 ORTHO05D006735 3.2e-105 386.3 505 62.4
C01p02120 Brassica napus HOM05D005480 ORTHO05D006735 1.2e-104 384.4 499 62.7
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 1.8e-103 380.6 283 72.4
CDE01G0732 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 3.0e-103 379.8 430 58.6
BolC3t20222H Brassica oleracea HOM05D005480 ORTHO05D006735 1.1e-102 377.9 423 57.2
A08p22500 Brassica napus HOM05D005480 ORTHO05D006735 3.3e-102 376.3 410 54.6
Oeu003952.2 Olea europaea HOM05D005480 ORTHO05D006735 1.3e-101 374.4 570 44.9
BraA08t34205Z Brassica rapa HOM05D005480 ORTHO05D006735 2.8e-101 373.2 408 54.4
BcaB03g12366 Brassica carinata HOM05D005480 ORTHO05D006735 9.0e-100 368.2 484 51.0
BcaC01g00434 Brassica carinata HOM05D005480 ORTHO05D006735 3.4e-99 366.3 429 55.0
C03p79710 Brassica napus HOM05D005480 ORTHO05D006735 3.4e-99 366.3 429 55.0
GSVIVG01005079001 Vitis vinifera HOM05D005480 ORTHO05D006735 5.0e-98 362.5 305 79.3
Os09g0453500 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 7.4e-94 348.6 334 55.1
AUR62001975 Chenopodium quinoa HOM05D005480 ORTHO05D006735 1.9e-89 334.0 268 67.5
Zm00001eb100530 Zea mays HOM05D005480 ORTHO05D006735 1.4e-84 317.8 306 52.9
Zm00001eb314700 Zea mays HOM05D005480 ORTHO05D006735 2.0e-83 313.9 307 53.4
BcaB03g12364 Brassica carinata HOM05D005480 ORTHO05D006735 1.5e-81 307.8 484 45.5
AagrBONN_evm.TU.Sc2ySwM_117.4106 Anthoceros agrestis HOM05D005480 ORTHO05D006735 1.5e-78 297.7 342 50.3
Mapoly0027s0041 Marchantia polymorpha HOM05D005480 ORTHO05D006735 4.0e-71 273.1 339 49.6
Ah.03g144040 Amaranthus hybridus HOM05D005480 ORTHO05D006735 4.7e-64 249.6 222 59.5
SGA_v2.0_scaffold135G34951 Striga asiatica HOM05D005480 ORTHO05D006735 4.7e-64 249.6 377 48.3
Pp3c24_6760 Physcomitrium patens HOM05D005480 ORTHO05D006735 6.1e-64 249.2 338 44.1
HPP92_016040 Vanilla planifolia HOM05D005480 ORTHO05D006735 2.4e-60 237.3 201 58.7
SEGI_40098 Sequoiadendron giganteum HOM05D005480 ORTHO05D006735 7.0e-60 235.7 245 54.7
Psat5g148720 Pisum sativum HOM05D005480 ORTHO05D006735 5.6e-57 226.1 137 89.1
CBR_g66690 Chara braunii HOM05D005480 ORTHO05D006735 4.9e-53 213.0 350 39.4
Os03g0765400 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 1.5e-49 201.4 316 41.5
Mapoly0016s0112 Marchantia polymorpha HOM05D005480 ORTHO05D006735 7.3e-41 172.6 347 37.5
Cpa.g.c44085 Carica papaya HOM05D005480 ORTHO05D006735 1.5e-30 138.3 194 49.0
Sabra07G0033400 Salix brachista HOM05D005480 ORTHO05D006735 4.9e-29 133.3 99 72.7
Sabra07G0032900 Salix brachista HOM05D005480 ORTHO05D006735 2.4e-28 131.0 99 71.7
Sabra07G0033100 Salix brachista HOM05D005480 ORTHO05D006735 2.4e-28 131.0 99 71.7
HPP92_016039 Vanilla planifolia HOM05D005480 ORTHO05D006735 4.7e-24 116.7 74 78.4
Ah.03g144030 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.1e-17 95.5 84 60.7
Cre16.g685217 Chlamydomonas reinhardtii HOM05D005480 ORTHO05D006735 1.1e-12 79.0 298 26.8
PRCOL_00002206 Prasinoderma coloniale HOM05D005480 ORTHO05D006735 5.4e-12 76.6 333 25.2
C04p28170 Brassica napus HOM05D005480 ORTHO05D006735 3.5e-11 73.9 97 50.5
BolC4t24360H Brassica oleracea HOM05D005480 ORTHO05D006735 3.5e-11 73.9 97 50.5
BcaC02g10502 Brassica carinata HOM05D005480 ORTHO05D006735 1.0e-10 72.4 65 61.5
C04p33290 Brassica napus HOM05D005480 ORTHO05D006735 1.4e-07 62.0 111 43.2
BolC4t24894H Brassica oleracea HOM05D005480 ORTHO05D006735 2.0e-06 58.2 98 45.9
Lalb_Chr05g0213591 Lupinus albus HOM05D005480 ORTHO05D006735 2.0e-06 58.2 36 77.8


User provided reference genes

Program Settings