Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 1.5e-67 259.2 119 100.0
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 3.7e-66 254.6 119 98.3
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 3.6e-61 238.0 119 89.1
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 6.8e-60 233.8 119 87.4
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 3.5e-56 221.5 119 82.4
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 4.6e-56 221.1 119 82.4
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 2.3e-55 218.8 119 79.8
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.1e-54 216.5 119 77.3
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.1e-54 216.5 119 77.3
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 1.1e-54 216.5 119 79.8
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 5.6e-54 214.2 119 78.2
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 7.3e-54 213.8 119 78.2
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 4.8e-53 211.1 116 76.7
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 1.1e-52 209.9 119 78.2
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 1.8e-52 209.1 119 76.5
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 1.5e-51 206.1 119 75.6
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 3.4e-51 204.9 114 78.9
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 4.4e-51 204.5 119 74.8
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 5.8e-51 204.1 115 74.8
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 7.6e-51 203.8 116 74.1
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 1.3e-50 203.0 116 74.1
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 1.7e-50 202.6 119 72.3
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 1.7e-50 202.6 119 72.3
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.7e-50 202.6 119 72.3
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.7e-50 202.6 119 72.3
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 2.2e-50 202.2 114 77.2
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 2.2e-50 202.2 119 73.1
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 2.9e-50 201.8 114 77.2
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 6.4e-50 200.7 119 71.4
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 1.1e-49 199.9 114 74.6
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 3.2e-49 198.4 114 74.6
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 3.2e-49 198.4 114 74.6
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 3.2e-49 198.4 119 71.4
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 5.4e-49 197.6 114 73.7
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 5.4e-49 197.6 114 72.8
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 5.4e-49 197.6 114 72.8
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 5.4e-49 197.6 114 73.7
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 7.1e-49 197.2 114 75.4
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 7.1e-49 197.2 114 74.6
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 7.1e-49 197.2 115 72.2
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 1.2e-48 196.4 114 75.4
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 3.5e-48 194.9 112 73.2
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 6.0e-48 194.1 112 72.3
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 7.9e-48 193.7 114 72.8
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.3e-47 193.0 111 72.1
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 1.7e-47 192.6 114 72.8
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 2.3e-47 192.2 112 73.2
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 3.0e-47 191.8 114 72.8
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 6.6e-47 190.7 114 69.3
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 8.7e-47 190.3 114 71.1
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 1.5e-46 189.5 114 70.2
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 2.5e-46 188.7 114 70.2
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 2.5e-46 188.7 114 70.2
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 3.3e-46 188.3 114 68.4
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 4.3e-46 188.0 112 70.5
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 7.3e-46 187.2 114 68.4
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 9.6e-46 186.8 114 71.1
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 1.3e-45 186.4 114 70.2
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 2.1e-45 185.7 119 67.2
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 2.1e-45 185.7 110 73.6
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 2.1e-45 185.7 114 71.1
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 6.2e-45 184.1 114 70.2
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 1.4e-44 183.0 114 70.2
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.8e-44 182.6 118 63.6
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 3.1e-44 181.8 112 69.6
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 3.1e-44 181.8 114 69.3
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 5.3e-44 181.0 112 67.9
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 5.3e-44 181.0 112 67.9
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 5.3e-44 181.0 112 67.9
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 6.9e-44 180.6 114 66.7
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 6.9e-44 180.6 113 69.9
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 2.0e-43 179.1 119 64.7
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 2.0e-43 179.1 118 61.9
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 5.8e-43 177.6 114 69.3
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 7.6e-43 177.2 113 68.1
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 7.6e-43 177.2 112 67.9
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 1.3e-42 176.4 113 68.1
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 3.8e-42 174.9 116 68.1
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 6.4e-42 174.1 112 66.1
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 6.4e-42 174.1 112 67.0
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 6.4e-42 174.1 112 67.0
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 8.4e-42 173.7 114 64.9
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 8.4e-42 173.7 114 64.9
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 8.4e-42 173.7 114 64.9
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 8.4e-42 173.7 114 64.9
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 1.4e-41 172.9 114 64.9
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 1.4e-41 172.9 114 67.5
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 1.9e-41 172.6 114 64.9
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 1.9e-41 172.6 114 64.9
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 1.9e-41 172.6 114 67.5
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 5.4e-41 171.0 114 64.0
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 7.1e-41 170.6 111 63.1
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 9.3e-41 170.2 117 62.4
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 1.2e-40 169.9 116 61.2
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 1.2e-40 169.9 111 63.1
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 1.2e-40 169.9 117 62.4
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 2.7e-40 168.7 116 60.3
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 2.7e-40 168.7 114 64.0
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 4.6e-40 167.9 114 63.2
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 6.0e-40 167.5 117 64.1
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 6.0e-40 167.5 114 61.4
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 6.0e-40 167.5 118 61.0
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 6.0e-40 167.5 118 61.0
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 7.9e-40 167.2 114 60.5
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 7.9e-40 167.2 114 62.3
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 7.9e-40 167.2 117 61.5
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 1.0e-39 166.8 114 63.2
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 1.8e-39 166.0 116 59.5
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 3.0e-39 165.2 114 61.4
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.0e-39 165.2 118 58.5
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 6.7e-39 164.1 114 59.6
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 6.7e-39 164.1 113 65.5
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 8.7e-39 163.7 112 63.4
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 1.9e-38 162.5 116 59.5
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 1.9e-38 162.5 116 59.5
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 1.9e-38 162.5 116 59.5
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 5.6e-38 161.0 108 61.1
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 1.3e-37 159.8 110 63.6
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 4.8e-37 157.9 114 61.4
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 6.2e-37 157.5 118 55.9
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.8e-36 156.0 112 58.9
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 5.3e-36 154.5 118 53.4
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 5.3e-36 154.5 118 55.1
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 1.5e-35 152.9 108 60.2
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.5e-35 152.9 118 55.1
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 1.5e-35 152.9 114 60.5
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 2.0e-35 152.5 108 61.1
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 2.6e-35 152.1 111 59.5
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 4.5e-35 151.4 112 57.1
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 1.3e-34 149.8 118 50.8
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 2.9e-34 148.7 112 55.4
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 3.8e-34 148.3 118 53.4
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 6.5e-34 147.5 113 55.8
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 1.1e-33 146.7 118 52.5
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.9e-33 146.0 113 59.3
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 4.2e-33 144.8 111 55.0
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 2.1e-32 142.5 114 54.4
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 2.7e-32 142.1 106 55.7
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 6.0e-32 141.0 120 51.7
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 6.0e-32 141.0 109 56.0
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 1.0e-31 140.2 115 53.9
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 3.9e-31 138.3 92 62.0
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.5e-30 135.6 102 55.9
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 5.7e-30 134.4 111 55.9
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 1.1e-28 130.2 109 56.9
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 1.1e-28 130.2 120 54.2
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 2.4e-28 129.0 109 52.3
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 1.2e-27 126.7 111 53.2
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 1.0e-26 123.6 109 54.1
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 3.8e-26 121.7 115 47.0
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 1.1e-25 120.2 91 57.1
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.1e-25 120.2 88 58.0
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 4.2e-25 118.2 93 54.8
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.2e-24 116.7 96 54.2
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 4.6e-24 114.8 112 45.5
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 2.3e-23 112.5 117 44.4
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 2.5e-22 109.0 112 42.9
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 7.4e-22 107.5 110 49.1
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.3e-21 106.7 107 46.7
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 9.0e-20 100.5 111 45.0
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 9.0e-20 100.5 111 45.0
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 7.7e-19 97.4 75 57.3
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.7e-18 96.3 72 55.6
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 1.1e-17 93.6 111 42.3
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.1e-17 93.6 68 55.9
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 3.0e-15 85.5 53 69.8
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 3.0e-15 85.5 91 41.8
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 8.8e-15 84.0 84 50.0
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 3.4e-11 72.0 109 39.4
Potri.010G083751 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.9e-09 66.2 42 64.3
BcaB03g14654 Brassica carinata HOM05D004187 ORTHO05D004890 7.2e-09 64.3 72 41.7
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 5.7e-06 54.7 34 61.8


User provided reference genes

Program Settings