Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G146432 Glycine max HOM05D008392 ORTHO05D010441 1.3e-54 216.1 107 100.0
Glyma.20G096200 Glycine max HOM05D008392 ORTHO05D010441 6.0e-47 190.7 102 91.2
VMungo0720G2188 Vigna mungo HOM05D008392 ORTHO05D010441 5.4e-40 167.5 105 78.1
Phvul.007G202100 Phaseolus vulgaris HOM05D008392 ORTHO05D010441 4.6e-39 164.5 94 81.9
Ca_10178_v3 Cicer arietinum L. HOM05D008392 ORTHO05D010441 4.3e-37 157.9 101 77.2
Psat6g152920 Pisum sativum HOM05D008392 ORTHO05D010441 2.1e-36 155.6 102 70.6
Psat6g152960 Pisum sativum HOM05D008392 ORTHO05D010441 3.6e-36 154.8 102 70.6
Lalb_Chr19g0129211 Lupinus albus HOM05D008392 ORTHO05D010441 2.4e-35 152.1 103 73.8
Lj5g0025247 Lotus japonicus HOM05D008392 ORTHO05D010441 1.5e-34 149.4 103 75.7
Lalb_Chr06g0167451 Lupinus albus HOM05D008392 ORTHO05D010441 4.9e-33 144.4 103 70.9
arahy.Tifrunner.gnm1.ann1.DRX87E Arachis hypogaea HOM05D008392 ORTHO05D010441 7.1e-32 140.6 95 70.5
arahy.Tifrunner.gnm1.ann1.S3TC9P Arachis hypogaea HOM05D008392 ORTHO05D010441 7.1e-32 140.6 95 70.5
Medtr5g080030 Medicago truncatula HOM05D008392 ORTHO05D010441 1.2e-31 139.8 99 69.7
Medtr5g095070 Medicago truncatula HOM05D008392 ORTHO05D010441 1.3e-30 136.3 92 72.8
Psat0s3339g0160 Pisum sativum HOM05D008392 ORTHO05D010441 3.9e-30 134.8 103 63.1
Lj1g0008102 Lotus japonicus HOM05D008392 ORTHO05D010441 1.9e-29 132.5 102 69.6
QL03p014198 Quercus lobata HOM05D008392 ORTHO05D010441 1.1e-24 116.7 122 50.8
Dinv24467 Davidia involucrata HOM05D008392 ORTHO05D010441 4.2e-24 114.8 93 59.1
CANSAT54G2036 Cannabis sativa HOM05D008392 ORTHO05D010441 9.3e-24 113.6 95 56.8
Peaxi162Scf01061g00127 Petunia axillaris HOM05D008392 ORTHO05D010441 1.1e-21 106.7 93 53.8
MD12G1204900 Malus domestica HOM05D008392 ORTHO05D010441 4.3e-21 104.8 102 50.0
MD12G1205000 Malus domestica HOM05D008392 ORTHO05D010441 7.4e-21 104.0 95 50.5
Actinidia35516 Actinidia chinensis HOM05D008392 ORTHO05D010441 3.7e-20 101.7 101 50.5
TAR362G1147 Trochodendron aralioides HOM05D001261 ORTHO05D010441 8.1e-20 100.5 97 52.6
MD04G1192900 Malus domestica HOM05D008392 ORTHO05D010441 1.4e-19 99.8 97 49.5
CAN.G1076.23 Capsicum annuum HOM05D008392 ORTHO05D010441 3.1e-19 98.6 93 51.6
Prupe.6G312100 Prunus persica HOM05D008392 ORTHO05D010441 3.1e-19 98.6 97 50.5
FvH4_6g07580 Fragaria vesca HOM05D008392 ORTHO05D010441 4.0e-19 98.2 95 48.4
FAN14G5205 Fragaria x ananassa HOM05D001457 ORTHO05D010441 4.0e-19 98.2 95 48.4
FAN05G3611 Fragaria x ananassa HOM05D008392 ORTHO05D010441 6.9e-19 97.4 95 48.4
RcHm_v2.0_Chr3g0457251 Rosa chinensis HOM05D008392 ORTHO05D010441 9.0e-19 97.1 97 46.4
Cc02_g35180 Coffea canephora HOM05D008392 ORTHO05D010441 2.0e-18 95.9 93 47.3
FAN02G4301 Fragaria x ananassa HOM05D001457 ORTHO05D010441 2.6e-18 95.5 95 46.3
Solyc01g100620.3 Solanum lycopersicum HOM05D008392 ORTHO05D010441 2.6e-18 95.5 93 49.5
Sopen01g044120 Solanum pennellii HOM05D008392 ORTHO05D010441 2.6e-18 95.5 93 49.5
Lsat_1_v5_gn_5_40160 Lactuca sativa HOM05D008392 ORTHO05D010441 9.9e-18 93.6 97 50.5
DCAR_025288 Daucus carota HOM05D008392 ORTHO05D010441 2.4e-16 89.0 93 46.2
DCAR_005422 Daucus carota HOM05D008392 ORTHO05D010441 3.2e-16 88.6 93 45.2
SalBow7G4279 Salvia bowleyana HOM05D008392 ORTHO05D010441 6.7e-14 80.9 97 39.2
TPR.G8444 Trifolium pratense HOM05D008392 ORTHO05D010441 3.3e-13 78.6 49 77.6
Nn5g30235 Nelumbo nucifera HOM05D001261 ORTHO05D010441 7.4e-13 77.4 96 42.7
TPR.G2592 Trifolium pratense HOM05D008392 ORTHO05D010441 8.2e-12 73.9 73 56.2
Aqoxy2G02705 Aquilegia oxysepala HOM05D001261 ORTHO05D010441 5.3e-11 71.2 94 41.5
SGA_v2.0_scaffold4G01973 Striga asiatica HOM05D008392 ORTHO05D010441 5.3e-11 71.2 83 42.2
Oeu053741.2 Olea europaea HOM05D008392 ORTHO05D010441 1.7e-09 66.2 82 42.7
ECA246G1668 Erigeron canadensis HOM05D005510 ORTHO05D006750 2.5e-08 62.4 78 39.7
AUR62013853 Chenopodium quinoa HOM05D001261 ORTHO05D001130 4.2e-08 61.6 62 43.5
Rhsim04G0007700 Rhododendron simsii HOM05D001261 ORTHO05D001130 5.5e-08 61.2 92 39.1
ATR0693G224 Amborella trichopoda HOM05D001261 ORTHO05D001130 9.3e-08 60.5 85 38.8
vmacro01573 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 9.3e-08 60.5 98 35.7
FAN16G2494 Fragaria x ananassa HOM05D001261 ORTHO05D001130 1.2e-07 60.1 95 33.7
AUR62036749 Chenopodium quinoa HOM05D001261 ORTHO05D001130 1.6e-07 59.7 62 43.5
Migut.B00949 Erythranthe guttata HOM05D008392 ORTHO05D010441 1.6e-07 59.7 45 62.2
FAN21G2040 Fragaria x ananassa HOM05D001261 ORTHO05D001130 2.1e-07 59.3 95 33.7
Actinidia03674 Actinidia chinensis HOM05D001261 ORTHO05D001130 2.7e-07 58.9 92 33.7
FvH4_3g41610 Fragaria vesca HOM05D001261 ORTHO05D001130 2.7e-07 58.9 95 33.7
FAN11G1862 Fragaria x ananassa HOM05D001261 ORTHO05D001130 2.7e-07 58.9 95 33.7
Lj3g0005977 Lotus japonicus HOM05D001261 ORTHO05D001130 3.5e-07 58.5 74 39.2
Nn5g30869 Nelumbo nucifera HOM05D001261 ORTHO05D001130 3.5e-07 58.5 65 40.0
Nitab4.5_0002353g0020 Nicotiana tabacum HOM05D001261 ORTHO05D001130 3.5e-07 58.5 66 40.9
PGR083G2486 Punica granatum HOM05D001261 ORTHO05D001130 3.5e-07 58.5 95 32.6
MD08G1006400 Malus domestica HOM05D001261 ORTHO05D001130 4.6e-07 58.2 63 42.9
Rhsim11G0096300 Rhododendron simsii HOM05D008392 ORTHO05D010441 4.6e-07 58.2 97 37.1
GSVIVG01008723001 Vitis vinifera HOM05D001261 ORTHO05D001130 4.6e-07 58.2 69 40.6
Migut.C00909 Erythranthe guttata HOM05D001261 ORTHO05D001130 6.0e-07 57.8 75 34.7
Hund22972 Selenicereus undatus HOM05D001261 ORTHO05D001130 6.0e-07 57.8 75 38.7
FAN25G3495 Fragaria x ananassa HOM05D001261 ORTHO05D001130 7.9e-07 57.4 95 31.6
Gorai.013G147900 Gossypium raimondii HOM05D001261 ORTHO05D001130 7.9e-07 57.4 107 32.7
MBI08_g40331_MAGBIO Magnolia biondii HOM05D001261 ORTHO05D001130 7.9e-07 57.4 63 39.7
arahy.Tifrunner.gnm1.ann1.J9QP8S Arachis hypogaea HOM05D001261 ORTHO05D001130 1.0e-06 57.0 103 30.1
arahy.Tifrunner.gnm1.ann1.K5DIHH Arachis hypogaea HOM05D001261 ORTHO05D001130 1.0e-06 57.0 103 30.1
EL10Ac3g06122 Beta vulgaris HOM05D001261 ORTHO05D001130 1.0e-06 57.0 97 36.1
CSS0050103 Camellia sinensis var. sinensis HOM05D001261 ORTHO05D001130 1.0e-06 57.0 74 33.8
CANSAT11G1516 Cannabis sativa HOM05D001261 ORTHO05D001130 1.0e-06 57.0 103 33.0
Cpa.g.sc12.68 Carica papaya HOM05D001261 ORTHO05D001130 1.0e-06 57.0 89 36.0
Nn6g31871 Nelumbo nucifera HOM05D001261 ORTHO05D001130 1.0e-06 57.0 63 39.7
THA.LOC104811448 Tarenaya hassleriana HOM05D001261 ORTHO05D001130 1.0e-06 57.0 63 41.3
THA.LOC104822702 Tarenaya hassleriana HOM05D001261 ORTHO05D001130 1.0e-06 57.0 96 34.4
arahy.Tifrunner.gnm1.ann1.03HAKR Arachis hypogaea HOM05D001261 ORTHO05D001130 1.3e-06 56.6 78 35.9
arahy.Tifrunner.gnm1.ann1.YM4VCW Arachis hypogaea HOM05D001261 ORTHO05D001130 1.3e-06 56.6 78 35.9
Nitab4.5_0002216g0010 Nicotiana tabacum HOM05D001261 ORTHO05D001130 1.3e-06 56.6 69 39.1
Pp3c1_33100 Physcomitrium patens HOM05D001261 ORTHO05D001130 1.3e-06 56.6 62 41.9
QL02p013344 Quercus lobata HOM05D001261 ORTHO05D001130 1.3e-06 56.6 63 39.7
Rhsim06G0010600 Rhododendron simsii HOM05D001261 ORTHO05D001130 1.3e-06 56.6 74 33.8
Actinidia15468 Actinidia chinensis HOM05D001261 ORTHO05D001130 1.8e-06 56.2 74 33.8
Ah.13g073330 Amaranthus hybridus HOM05D001261 ORTHO05D001130 1.8e-06 56.2 73 37.0
A06p00070 Brassica napus HOM05D001261 ORTHO05D001130 1.8e-06 56.2 96 35.4
BraA06t23222Z Brassica rapa HOM05D001261 ORTHO05D001130 1.8e-06 56.2 96 35.4
CAN.G8.47 Capsicum annuum HOM05D001261 ORTHO05D001130 1.8e-06 56.2 69 39.1
Ca_14139_v3 Cicer arietinum L. HOM05D001261 ORTHO05D001130 1.8e-06 56.2 92 33.7
Dinv39562 Davidia involucrata HOM05D001261 ORTHO05D001130 1.8e-06 56.2 63 41.3
Gohir.D13G131900 Gossypium hirsutum HOM05D001261 ORTHO05D001130 1.8e-06 56.2 107 32.7
Lalb_Chr18g0048641 Lupinus albus HOM05D001261 ORTHO05D001130 2.3e-06 55.8 64 39.1
Cfa014019 Carpinus fangiana HOM05D001261 ORTHO05D001130 3.0e-06 55.5 63 39.7
CDE03G0487 Ceratophyllum demersum HOM05D001261 ORTHO05D001130 3.0e-06 55.5 74 35.1
Haze_22726 Corylus avellana HOM05D001261 ORTHO05D001130 3.0e-06 55.5 63 39.7
Gohir.A13G128500 Gossypium hirsutum HOM05D001261 ORTHO05D001130 3.0e-06 55.5 107 31.8
Phvul.009G020700 Phaseolus vulgaris HOM05D001261 ORTHO05D001130 3.0e-06 55.5 63 39.7
Prupe.1G358300 Prunus persica HOM05D001261 ORTHO05D001130 3.0e-06 55.5 63 39.7
RcHm_v2.0_Chr5g0074651 Rosa chinensis HOM05D001261 ORTHO05D001130 3.0e-06 55.5 96 30.2
SEGI_07905 Sequoiadendron giganteum HOM05D001261 ORTHO05D001130 3.0e-06 55.5 91 34.1
Sc03g0011770 Simmondsia chinensis HOM05D001261 ORTHO05D001130 3.0e-06 55.5 64 39.1
Solyc12g016190.2 Solanum lycopersicum HOM05D001261 ORTHO05D001130 3.0e-06 55.5 69 39.1
FAN15G0503 Fragaria x ananassa HOM05D001261 ORTHO05D001130 3.9e-06 55.1 64 39.1
FAN27G0685 Fragaria x ananassa HOM05D001261 ORTHO05D001130 3.9e-06 55.1 64 39.1
Medtr3g114920 Medicago truncatula HOM05D001261 ORTHO05D001130 3.9e-06 55.1 63 38.1
QL08p000529 Quercus lobata HOM05D001261 ORTHO05D001130 3.9e-06 55.1 89 33.7
SalBow7G1352 Salvia bowleyana HOM05D001261 ORTHO05D001130 3.9e-06 55.1 63 39.7
THA.LOC104810304 Tarenaya hassleriana HOM05D001261 ORTHO05D001130 3.9e-06 55.1 96 33.3
TWI38G2024 Tripterygium wilfordii HOM05D001261 ORTHO05D001130 3.9e-06 55.1 99 33.3
VMungo1309G2014 Vigna mungo HOM05D001261 ORTHO05D001130 3.9e-06 55.1 63 39.7
arahy.Tifrunner.gnm1.ann1.1C5WUF Arachis hypogaea HOM05D001261 ORTHO05D001130 5.1e-06 54.7 74 37.8
arahy.Tifrunner.gnm1.ann1.8P4JNJ Arachis hypogaea HOM05D001261 ORTHO05D001130 5.1e-06 54.7 74 37.8
CARHR069650 Cardamine hirsuta HOM05D001261 ORTHO05D001130 5.1e-06 54.7 62 38.7
CiPaw.07G142500 Carya illinoinensis HOM05D001261 ORTHO05D001130 5.1e-06 54.7 63 39.7
DCAR_013758 Daucus carota HOM05D001261 ORTHO05D001130 5.1e-06 54.7 66 36.4
Duzib093G0420 Durio zibethinus HOM05D001261 ORTHO05D001130 5.1e-06 54.7 63 38.1
Duzib268G0395 Durio zibethinus HOM05D001261 ORTHO05D001130 5.1e-06 54.7 101 32.7
Eucgr.F03526 Eucalyptus grandis HOM05D001261 ORTHO05D001130 5.1e-06 54.7 64 39.1
Glyma.04G020000 Glycine max HOM05D001261 ORTHO05D001130 5.1e-06 54.7 63 39.7
Lalb_Chr21g0307471 Lupinus albus HOM05D001261 ORTHO05D001130 5.1e-06 54.7 65 32.3
Manes.15G053800 Manihot esculenta HOM05D001261 ORTHO05D001130 5.1e-06 54.7 103 30.1
PSO170G1184 Papaver somniferum HOM05D001261 ORTHO05D001130 5.1e-06 54.7 63 38.1
PSO210G5207 Papaver somniferum HOM05D001261 ORTHO05D001130 5.1e-06 54.7 63 38.1
Prupe.6G035300 Prunus persica HOM05D001261 ORTHO05D001130 5.1e-06 54.7 95 30.5
PGSC0003DMG400029327 Solanum tuberosum HOM05D001261 ORTHO05D001130 5.1e-06 54.7 63 38.1
Atru.chr2.3895 Acer truncatum HOM05D001261 ORTHO05D001130 6.7e-06 54.3 101 32.7
CANSAT25G2358 Cannabis sativa HOM05D001261 ORTHO05D001130 6.7e-06 54.3 63 39.7
CAN.G401.4 Capsicum annuum HOM05D001261 ORTHO05D001130 6.7e-06 54.3 63 39.7
Cfa016960 Carpinus fangiana HOM05D001261 ORTHO05D001130 6.7e-06 54.3 89 31.5
CDE06G1624 Ceratophyllum demersum HOM05D000050 ORTHO05D001130 6.7e-06 54.3 63 38.1
Haze_09915 Corylus avellana HOM05D001261 ORTHO05D001130 6.7e-06 54.3 89 31.5
MD15G1005800 Malus domestica HOM05D001261 ORTHO05D001130 6.7e-06 54.3 63 39.7
Manes.03G147600 Manihot esculenta HOM05D001261 ORTHO05D001130 6.7e-06 54.3 104 30.8
Nitab4.5_0003570g0010 Nicotiana tabacum HOM05D001261 ORTHO05D001130 6.7e-06 54.3 69 37.7
Hund05144 Selenicereus undatus HOM05D001261 ORTHO05D001130 6.7e-06 54.3 75 33.3
Solyc12g094440.2 Solanum lycopersicum HOM05D001261 ORTHO05D001130 6.7e-06 54.3 63 38.1
Thecc.07G001600 Theobroma cacao HOM05D001261 ORTHO05D001130 6.7e-06 54.3 76 35.5
TPR.G38136 Trifolium pratense HOM05D001261 ORTHO05D001130 6.7e-06 54.3 63 38.1
Glyma.10G294100 Glycine max HOM05D001261 ORTHO05D001130 8.7e-06 53.9 93 31.2
Gohir.A05G182100 Gossypium hirsutum HOM05D001261 ORTHO05D001130 8.7e-06 53.9 63 38.1
Gohir.D05G185100 Gossypium hirsutum HOM05D001261 ORTHO05D001130 8.7e-06 53.9 63 38.1
Gorai.009G190400 Gossypium raimondii HOM05D001261 ORTHO05D001130 8.7e-06 53.9 63 38.1
SEGI_22736 Sequoiadendron giganteum HOM05D001261 ORTHO05D001130 8.7e-06 53.9 64 35.9


User provided reference genes

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