Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G062451 Glycine max HOM05D000776 ORTHO05D213090 1.9e-107 392.5 194 100.0
SalBow1G1568 Salvia bowleyana HOM05D000776 ORTHO05D001624 2.5e-11 73.2 68 58.8
Glyma.07G271200 Glycine max HOM05D000776 ORTHO05D001624 1.6e-10 70.5 68 58.8
Glyma.18G145700 Glycine max HOM05D000776 ORTHO05D011849 1.6e-10 70.5 68 58.8
Glyma.18G211700 Glycine max HOM05D000776 ORTHO05D011849 1.6e-10 70.5 68 58.8
arahy.Tifrunner.gnm1.ann1.756MKY Arachis hypogaea HOM05D000776 ORTHO05D001624 2.1e-10 70.1 68 57.4
Sopen08g028890 Solanum pennellii HOM05D000776 ORTHO05D001624 4.8e-10 68.9 68 57.4
CiPaw.11G139000 Carya illinoinensis HOM05D000776 ORTHO05D001624 6.2e-10 68.6 68 55.9
arahy.Tifrunner.gnm1.ann1.1LQ7DN Arachis hypogaea HOM05D000776 ORTHO05D001624 8.1e-10 68.2 68 55.9
Cfa012123 Carpinus fangiana HOM05D000776 ORTHO05D001624 8.1e-10 68.2 68 55.9
Nitab4.5_0005648g0030 Nicotiana tabacum HOM05D000776 ORTHO05D001624 1.1e-09 67.8 68 55.9
Nitab4.5_0010472g0030 Nicotiana tabacum HOM05D000776 ORTHO05D001624 1.1e-09 67.8 68 55.9
PGSC0003DMG400003054 Solanum tuberosum HOM05D000776 ORTHO05D001624 1.1e-09 67.8 68 55.9
CAN.G981.6 Capsicum annuum HOM05D000776 ORTHO05D001624 1.4e-09 67.4 68 55.9
Gorai.004G209200 Gossypium raimondii HOM05D000776 ORTHO05D001624 1.4e-09 67.4 69 52.2
Hma1.2p1_0514F.1_g169920 Hydrangea macrophylla HOM05D000776 ORTHO05D001624 1.4e-09 67.4 68 54.4
Solyc08g080570.4 Solanum lycopersicum HOM05D000776 ORTHO05D001624 1.4e-09 67.4 68 55.9
Dinv37670 Davidia involucrata HOM05D000776 ORTHO05D001624 1.8e-09 67.0 68 54.4
Peaxi162Scf00714g00323 Petunia axillaris HOM05D000776 ORTHO05D001624 3.1e-09 66.2 68 54.4
Hund28663 Selenicereus undatus HOM05D000776 ORTHO05D001624 3.1e-09 66.2 68 55.9
Hund28665 Selenicereus undatus HOM05D000776 ORTHO05D001624 3.1e-09 66.2 68 55.9
BcaB03g13169 Brassica carinata HOM05D000776 ORTHO05D001624 4.0e-09 65.9 68 52.9
Duzib084G0275 Durio zibethinus HOM05D000776 ORTHO05D001624 4.0e-09 65.9 68 52.9
Gohir.D12G228500 Gossypium hirsutum HOM05D000776 ORTHO05D001624 4.0e-09 65.9 68 52.9
Lj2C194T17 Lonicera japonica HOM05D000776 ORTHO05D001624 4.0e-09 65.9 68 54.4
MBI04_g04736_MAGBIO Magnolia biondii HOM05D000776 ORTHO05D001624 4.0e-09 65.9 68 52.9
PSO478G2983 Papaver somniferum HOM05D000776 ORTHO05D001624 4.0e-09 65.9 68 52.9
PSO782G1764 Papaver somniferum HOM05D000776 ORTHO05D001624 4.0e-09 65.9 68 52.9
THA.LOC104809414 Tarenaya hassleriana HOM05D000776 ORTHO05D001624 4.0e-09 65.9 68 52.9
Thecc.03G273600 Theobroma cacao HOM05D000776 ORTHO05D001624 4.0e-09 65.9 68 52.9
TAR374G0295 Trochodendron aralioides HOM05D000776 ORTHO05D001624 4.0e-09 65.9 68 52.9
CiPaw.12G096900 Carya illinoinensis HOM05D000776 ORTHO05D001624 5.3e-09 65.5 68 52.9
COL.COLO4_34417 Corchorus olitorius HOM05D000776 ORTHO05D001624 5.3e-09 65.5 68 52.9
DCAR_008415 Daucus carota HOM05D000776 ORTHO05D001624 5.3e-09 65.5 68 54.4
Migut.E01129 Erythranthe guttata HOM05D000776 ORTHO05D001624 6.9e-09 65.1 68 52.9
Medtr8g096880 Medicago truncatula HOM05D000776 ORTHO05D001624 6.9e-09 65.1 68 52.9
Phvul.003G090500 Phaseolus vulgaris HOM05D000776 ORTHO05D001624 6.9e-09 65.1 68 54.4
PGR031G1935 Punica granatum HOM05D000776 ORTHO05D001624 6.9e-09 65.1 68 52.9
VMungo1215G0801 Vigna mungo HOM05D000776 ORTHO05D001624 6.9e-09 65.1 68 54.4
Ah.12g057480 Amaranthus hybridus HOM05D000776 ORTHO05D001624 9.0e-09 64.7 68 54.4
EL10Ac5g12750 Beta vulgaris HOM05D000776 ORTHO05D001624 9.0e-09 64.7 68 54.4
Gohir.D08G198400 Gossypium hirsutum HOM05D000776 ORTHO05D001624 9.0e-09 64.7 68 51.5
Oeu029778.1 Olea europaea HOM05D000776 ORTHO05D001624 9.0e-09 64.7 68 52.9
TPR.G5954 Trifolium pratense HOM05D000776 ORTHO05D001624 9.0e-09 64.7 68 52.9
A06p08910 Brassica napus HOM05D000776 ORTHO05D008161 1.2e-08 64.3 68 51.5
BraA06t24084Z Brassica rapa HOM05D000776 ORTHO05D008161 1.2e-08 64.3 68 51.5
Gohir.A08G179600 Gossypium hirsutum HOM05D000776 ORTHO05D001624 1.2e-08 64.3 68 51.5
Gorai.008G244600 Gossypium raimondii HOM05D000776 ORTHO05D001624 1.2e-08 64.3 68 51.5
MD04G1064600 Malus domestica HOM05D000776 ORTHO05D001624 1.2e-08 64.3 68 51.5
Prupe.5G093300 Prunus persica HOM05D000776 ORTHO05D001624 1.2e-08 64.3 68 51.5
HPP92_003259 Vanilla planifolia HOM05D000776 ORTHO05D001624 1.2e-08 64.3 32 81.2
AL1G24390 Arabidopsis lyrata HOM05D000776 ORTHO05D001624 1.5e-08 63.9 68 52.9
AT1G12780 Arabidopsis thaliana HOM05D000776 ORTHO05D001624 1.5e-08 63.9 68 52.9
CSS0022914 Camellia sinensis var. sinensis HOM05D000776 ORTHO05D001624 1.5e-08 63.9 68 52.9
CANSAT21G0590 Cannabis sativa HOM05D000776 ORTHO05D001624 1.5e-08 63.9 68 52.9
FvH4_5g01780 Fragaria vesca HOM05D000776 ORTHO05D001624 1.5e-08 63.9 68 51.5
FAN04G2938 Fragaria x ananassa HOM05D000776 ORTHO05D001624 1.5e-08 63.9 68 51.5
FAN08G0150 Fragaria x ananassa HOM05D000776 ORTHO05D001624 1.5e-08 63.9 68 51.5
FAN18G4093 Fragaria x ananassa HOM05D000776 ORTHO05D001624 1.5e-08 63.9 68 51.5
Manes.01G065100 Manihot esculenta HOM05D000776 ORTHO05D001624 1.5e-08 63.9 68 52.9
RcHm_v2.0_Chr7g0198901 Rosa chinensis HOM05D000776 ORTHO05D001624 1.5e-08 63.9 68 51.5
Aqoxy5G03967 Aquilegia oxysepala HOM05D000776 ORTHO05D001624 2.0e-08 63.5 68 51.5
arahy.Tifrunner.gnm1.ann1.8QP97F Arachis hypogaea HOM05D000776 ORTHO05D001624 2.0e-08 63.5 68 52.9
arahy.Tifrunner.gnm1.ann1.9GGB7F Arachis hypogaea HOM05D000776 ORTHO05D001624 2.0e-08 63.5 68 52.9
CARHR013090 Cardamine hirsuta HOM05D000776 ORTHO05D001624 2.0e-08 63.5 68 52.9
Eucgr.D01906 Eucalyptus grandis HOM05D000776 ORTHO05D001624 2.0e-08 63.5 68 51.5
Glyma.05G204700 Glycine max HOM05D000776 ORTHO05D001624 2.0e-08 63.5 68 51.5
Gohir.A01G140863 Gossypium hirsutum HOM05D000776 ORTHO05D011849 2.0e-08 63.5 68 50.0
Manes.02G025300 Manihot esculenta HOM05D000776 ORTHO05D001624 2.0e-08 63.5 68 52.9
Sabra03G0087300 Salix brachista HOM05D000776 ORTHO05D001624 2.0e-08 63.5 68 51.5
SGA_v2.0_scaffold144G35964 Striga asiatica HOM05D000776 ORTHO05D001624 2.0e-08 63.5 31 83.9
TWI15G0185 Tripterygium wilfordii HOM05D000776 ORTHO05D001624 2.0e-08 63.5 68 50.0
A08p32650 Brassica napus HOM05D000776 ORTHO05D001624 2.6e-08 63.2 68 52.9
C08p15630 Brassica napus HOM05D000776 ORTHO05D001624 2.6e-08 63.2 68 52.9
BraA08t35188Z Brassica rapa HOM05D000776 ORTHO05D001624 2.6e-08 63.2 68 52.9
Gohir.A12G226000 Gossypium hirsutum HOM05D000776 ORTHO05D001624 2.6e-08 63.2 68 51.5
Sc01g0008640 Simmondsia chinensis HOM05D000776 ORTHO05D001624 2.6e-08 63.2 68 52.9
Atru.chr9.1565 Acer truncatum HOM05D000776 ORTHO05D001624 3.4e-08 62.8 68 51.5
Aa31LG2G650 Aethionema arabicum HOM05D000776 ORTHO05D001624 3.4e-08 62.8 68 51.5
AL2G12330 Arabidopsis lyrata HOM05D000776 ORTHO05D001624 3.4e-08 62.8 68 51.5
MSTRG.13831 Avicennia marina HOM05D000776 ORTHO05D001624 3.4e-08 62.8 68 51.5
BcaC05g25157 Brassica carinata HOM05D000776 ORTHO05D008161 3.4e-08 62.8 68 51.5
BcaC05g25158 Brassica carinata HOM05D000776 ORTHO05D011849 3.4e-08 62.8 68 51.5
C05p10520 Brassica napus HOM05D000776 ORTHO05D008161 3.4e-08 62.8 68 51.5
BolC5t29798H Brassica oleracea HOM05D000776 ORTHO05D008161 3.4e-08 62.8 68 51.5
Duzib205G1733 Durio zibethinus HOM05D000776 ORTHO05D001624 3.4e-08 62.8 68 51.5
Thhalv10008065m.g Eutrema salsugineum HOM05D000776 ORTHO05D001624 3.4e-08 62.8 68 51.5
Thhalv10023559m.g Eutrema salsugineum HOM05D000776 ORTHO05D001624 3.4e-08 62.8 68 51.5
Medtr4g134490 Medicago truncatula HOM05D000776 ORTHO05D001624 3.4e-08 62.8 68 51.5
Ah.02g116470 Amaranthus hybridus HOM05D000776 ORTHO05D001624 4.5e-08 62.4 68 52.9
AL1G24240 Arabidopsis lyrata HOM05D000776 ORTHO05D001624 4.5e-08 62.4 68 51.5
ClCG01G003030 Citrullus lanatus HOM05D000776 ORTHO05D001624 4.5e-08 62.4 67 52.2
CsaV3_5G003160 Cucumis sativus L. HOM05D000776 ORTHO05D000064 4.5e-08 62.4 67 50.7
Lalb_Chr05g0224991 Lupinus albus HOM05D000776 ORTHO05D001624 4.5e-08 62.4 68 50.0
THA.LOC104818090 Tarenaya hassleriana HOM05D000776 ORTHO05D001624 4.5e-08 62.4 68 51.5
TPR.G12967 Trifolium pratense HOM05D000776 ORTHO05D001624 4.5e-08 62.4 68 51.5
Carub.0001s1250 Capsella rubella HOM05D000776 ORTHO05D001624 5.8e-08 62.0 68 51.5
Cc08_g14210 Coffea canephora HOM05D000776 ORTHO05D001624 5.8e-08 62.0 68 50.0
Dinv38989 Davidia involucrata HOM05D000776 ORTHO05D001624 5.8e-08 62.0 68 51.5
Glyma.08G011800 Glycine max HOM05D000776 ORTHO05D001624 5.8e-08 62.0 68 50.0
TWI60G1494 Tripterygium wilfordii HOM05D000776 ORTHO05D001624 5.8e-08 62.0 31 80.6
BcaC04g22714 Brassica carinata HOM05D000776 ORTHO05D001624 7.6e-08 61.6 68 50.0
BcaC06g31941 Brassica carinata HOM05D000776 ORTHO05D001624 7.6e-08 61.6 68 50.0
A09p13510 Brassica napus HOM05D000776 ORTHO05D001624 7.6e-08 61.6 68 50.0
C09p16010 Brassica napus HOM05D000776 ORTHO05D001624 7.6e-08 61.6 68 50.0
BolC8t49190H Brassica oleracea HOM05D000776 ORTHO05D001624 7.6e-08 61.6 68 51.5
BolC9t54516H Brassica oleracea HOM05D000776 ORTHO05D001624 7.6e-08 61.6 68 50.0
BraA09t37002Z Brassica rapa HOM05D000776 ORTHO05D001624 7.6e-08 61.6 68 50.0
CARHR048320 Cardamine hirsuta HOM05D000776 ORTHO05D001624 7.6e-08 61.6 68 50.0
Ca_17557_v3 Cicer arietinum L. HOM05D000776 ORTHO05D001624 7.6e-08 61.6 67 52.2
QL12p017699 Quercus lobata HOM05D000776 ORTHO05D001624 7.6e-08 61.6 68 51.5
Sp2g01390 Schrenkiella parvula HOM05D000776 ORTHO05D001624 7.6e-08 61.6 68 50.0
GSVIVG01019833001 Vitis vinifera HOM05D000776 ORTHO05D001624 7.6e-08 61.6 68 51.5
Actinidia05220 Actinidia chinensis HOM05D000776 ORTHO05D001624 9.9e-08 61.2 68 50.0
Actinidia27399 Actinidia chinensis HOM05D000776 ORTHO05D011849 9.9e-08 61.2 68 51.5
Ciclev10020907m.g Citrus clementina HOM05D000776 ORTHO05D001624 9.9e-08 61.2 68 51.5
Gohir.A07G189000 Gossypium hirsutum HOM05D000776 ORTHO05D011849 9.9e-08 61.2 68 50.0
Psat7g036120 Pisum sativum HOM05D000776 ORTHO05D001624 9.9e-08 61.2 68 52.9
Thecc.01G187700 Theobroma cacao HOM05D000776 ORTHO05D410126 9.9e-08 61.2 75 49.3
AT1G63180 Arabidopsis thaliana HOM05D000776 ORTHO05D001624 1.3e-07 60.8 68 50.0
AUR62017273 Chenopodium quinoa HOM05D000776 ORTHO05D001624 1.3e-07 60.8 68 51.5
Lj4g0016588 Lotus japonicus HOM05D000776 ORTHO05D001624 1.3e-07 60.8 68 50.0
Sp1g11340 Schrenkiella parvula HOM05D000776 ORTHO05D001624 1.3e-07 60.8 68 50.0
ATR0757G007 Amborella trichopoda HOM05D000776 ORTHO05D001624 1.7e-07 60.5 68 50.0
Phvul.002G286800 Phaseolus vulgaris HOM05D000776 ORTHO05D001624 1.7e-07 60.5 68 50.0
Potri.003G123700 Populus trichocarpa HOM05D000776 ORTHO05D001624 1.7e-07 60.5 68 50.0
BraA01t02620Z Brassica rapa HOM05D000776 ORTHO05D001624 2.2e-07 60.1 78 46.2
Carub.0002s0175 Capsella rubella HOM05D000776 ORTHO05D001624 2.2e-07 60.1 68 50.0
Cpa.g.sc74.69 Carica papaya HOM05D000776 ORTHO05D001624 2.2e-07 60.1 68 51.5
MELO3C005640.2 Cucumis melo HOM05D000776 ORTHO05D001624 2.2e-07 60.1 67 50.7
DCAR_018833 Daucus carota HOM05D000776 ORTHO05D001624 2.2e-07 60.1 68 51.5
FAN13G0887 Fragaria x ananassa HOM05D000776 ORTHO05D001624 2.2e-07 60.1 68 50.0
Os09g0526700 Oryza sativa ssp. japonica HOM05D000776 ORTHO05D001624 2.9e-07 59.7 31 77.4
Psat1g087040 Pisum sativum HOM05D000776 ORTHO05D001624 3.8e-07 59.3 32 78.1
Glyma.12G162600 Glycine max HOM05D000776 ORTHO05D011849 4.9e-07 58.9 26 96.2
HanXRQChr12g0355431 Helianthus annuus HOM05D000776 ORTHO05D001624 4.9e-07 58.9 68 48.5
AUR62010630 Chenopodium quinoa HOM05D000776 ORTHO05D001624 8.4e-07 58.2 68 50.0
VMungo0251G0325 Vigna mungo HOM05D000776 ORTHO05D001624 8.4e-07 58.2 68 48.5
Lalb_Chr16g0389771 Lupinus albus HOM05D000776 ORTHO05D001624 1.1e-06 57.8 68 48.5
Psat0s3433g0160 Pisum sativum HOM05D000776 ORTHO05D001624 1.1e-06 57.8 32 75.0
Psat1g087000 Pisum sativum HOM05D000776 ORTHO05D001624 1.1e-06 57.8 32 75.0
Psat1g087240 Pisum sativum HOM05D000776 ORTHO05D001624 1.1e-06 57.8 32 75.0
Psat1g090360 Pisum sativum HOM05D000776 ORTHO05D001624 1.1e-06 57.8 32 75.0
Psat1g090560 Pisum sativum HOM05D000776 ORTHO05D011849 1.1e-06 57.8 32 75.0
Lsat_1_v5_gn_3_8340 Lactuca sativa HOM05D000776 ORTHO05D001624 1.4e-06 57.4 68 48.5
Rhsim02G0244800 Rhododendron simsii HOM05D000776 ORTHO05D001624 1.4e-06 57.4 88 43.2
SEGI_26374 Sequoiadendron giganteum HOM05D000776 ORTHO05D001624 1.9e-06 57.0 32 75.0
Gohir.A03G118900 Gossypium hirsutum HOM05D000776 ORTHO05D011849 2.4e-06 56.6 32 78.1
Psat1g087120 Pisum sativum HOM05D000776 ORTHO05D011849 2.4e-06 56.6 68 48.5
Zm00001eb319250 Zea mays HOM05D000776 ORTHO05D001624 3.2e-06 56.2 68 45.6
ECA246G4729 Erigeron canadensis HOM05D000776 ORTHO05D001624 4.2e-06 55.8 68 47.1
Gohir.A13G001300 Gossypium hirsutum HOM05D000776 ORTHO05D011849 5.4e-06 55.5 63 50.8
HanXRQChr06g0165501 Helianthus annuus HOM05D000776 ORTHO05D001624 7.1e-06 55.1 68 47.1
Psat1g090400 Pisum sativum HOM05D000776 ORTHO05D011849 9.3e-06 54.7 32 75.0


User provided reference genes

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