Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G002500 Glycine max HOM05D004786 ORTHO05D005582 8.8e-51 203.4 106 100.0
Glyma.10G014500 Glycine max HOM05D004786 ORTHO05D005582 1.7e-49 199.1 104 99.0
Glyma.10G001200 Glycine max HOM05D004786 ORTHO05D005582 6.3e-49 197.2 104 98.1
Lj5g0024614 Lotus japonicus HOM05D004786 ORTHO05D005582 9.1e-48 193.4 104 95.2
Ca_01909_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 5.9e-47 190.7 104 94.2
Phvul.007G215700 Phaseolus vulgaris HOM05D004786 ORTHO05D005582 7.7e-47 190.3 104 94.2
arahy.Tifrunner.gnm1.ann1.QQF2XI Arachis hypogaea HOM05D004786 ORTHO05D005582 1.5e-45 186.0 104 91.3
arahy.Tifrunner.gnm1.ann1.BSR60Q Arachis hypogaea HOM05D004786 ORTHO05D005582 2.5e-45 185.3 104 91.3
Lalb_Chr11g0063261 Lupinus albus HOM05D004786 ORTHO05D005582 2.5e-45 185.3 104 93.3
TPR.G19757 Trifolium pratense HOM05D004786 ORTHO05D005582 7.2e-45 183.7 104 89.4
arahy.Tifrunner.gnm1.ann1.7GX23T Arachis hypogaea HOM05D004786 ORTHO05D005582 9.5e-45 183.3 104 90.4
Ca_10295_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 2.8e-44 181.8 104 90.4
Haze_05017 Corylus avellana HOM05D004786 ORTHO05D005582 2.0e-42 175.6 104 85.6
arahy.Tifrunner.gnm1.ann1.U8589F Arachis hypogaea HOM05D004786 ORTHO05D005582 5.7e-42 174.1 104 85.6
Gorai.011G094200 Gossypium raimondii HOM05D004786 ORTHO05D005582 5.7e-42 174.1 104 84.6
MELO3C015937.2 Cucumis melo HOM05D004786 ORTHO05D005582 9.8e-42 173.3 104 86.5
Gohir.D10G086000 Gossypium hirsutum HOM05D004786 ORTHO05D005582 1.3e-41 172.9 104 83.7
CsaV3_7G029840 Cucumis sativus L. HOM05D004786 ORTHO05D005582 1.7e-41 172.6 104 86.5
COL.COLO4_29184 Corchorus olitorius HOM05D004786 ORTHO05D005582 2.2e-41 172.2 104 84.6
QL02p082487 Quercus lobata HOM05D004786 ORTHO05D005582 6.3e-41 170.6 104 82.7
Duzib147G1635 Durio zibethinus HOM05D004786 ORTHO05D005582 8.3e-41 170.2 104 83.7
Prupe.2G036200 Prunus persica HOM05D004786 ORTHO05D005582 8.3e-41 170.2 104 83.7
QL12p029078 Quercus lobata HOM05D004786 ORTHO05D005582 8.3e-41 170.2 104 83.7
Thecc.04G020200 Theobroma cacao HOM05D004786 ORTHO05D005582 8.3e-41 170.2 104 83.7
CiPaw.08G091100 Carya illinoinensis HOM05D004786 ORTHO05D005582 1.1e-40 169.9 104 82.7
RcHm_v2.0_Chr4g0410491 Rosa chinensis HOM05D004786 ORTHO05D005582 1.4e-40 169.5 106 84.0
Ciclev10002837m.g Citrus clementina HOM05D004786 ORTHO05D005582 4.1e-40 167.9 105 82.9
FvH4_5g39500 Fragaria vesca HOM05D004786 ORTHO05D005582 7.0e-40 167.2 106 84.0
FAN13G1587 Fragaria x ananassa HOM05D004786 ORTHO05D005582 7.0e-40 167.2 106 82.1
FAN18G2645 Fragaria x ananassa HOM05D004786 ORTHO05D005582 7.0e-40 167.2 106 84.0
Manes.02G090900 Manihot esculenta HOM05D004786 ORTHO05D005582 7.0e-40 167.2 104 80.8
Potri.014G122500 Populus trichocarpa HOM05D004786 ORTHO05D005582 2.0e-39 165.6 105 80.0
TWI18G0747 Tripterygium wilfordii HOM05D004786 ORTHO05D005582 2.0e-39 165.6 104 81.7
RcHm_v2.0_Chr7g0241821 Rosa chinensis HOM05D004786 ORTHO05D005582 2.7e-39 165.2 106 82.1
CANSAT01G0603 Cannabis sativa HOM05D004786 ORTHO05D005582 4.5e-39 164.5 102 82.4
ClCG09G005230 Citrullus lanatus HOM05D004786 ORTHO05D005582 4.5e-39 164.5 111 80.2
Ciclev10022845m.g Citrus clementina HOM05D004786 ORTHO05D005582 4.5e-39 164.5 105 81.9
Sed0001914 Sechium edule HOM05D004786 ORTHO05D005582 5.9e-39 164.1 104 80.8
Gorai.001G266700 Gossypium raimondii HOM05D004786 ORTHO05D005582 1.0e-38 163.3 104 77.9
HanXRQChr01g0000811 Helianthus annuus HOM05D004786 ORTHO05D005582 1.3e-38 162.9 103 79.6
vmacro02412 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 1.3e-38 162.9 104 80.8
Gohir.A10G101800 Gossypium hirsutum HOM05D004786 ORTHO05D005582 2.3e-38 162.2 104 81.7
Cc06_g14210 Coffea canephora HOM05D004786 ORTHO05D005582 2.9e-38 161.8 104 78.8
CSS0028094 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 3.8e-38 161.4 104 76.9
Dinv27220 Davidia involucrata HOM05D004786 ORTHO05D005582 3.8e-38 161.4 104 78.8
Sabra14G0090900 Salix brachista HOM05D004786 ORTHO05D005582 5.0e-38 161.0 105 79.0
THA.LOC104801297 Tarenaya hassleriana HOM05D004786 ORTHO05D005582 6.6e-38 160.6 105 81.0
Cpa.g.sc18.18 Carica papaya HOM05D004786 ORTHO05D005582 8.6e-38 160.2 105 79.0
Nn4g25644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 8.6e-38 160.2 106 79.2
Atru.chr5.1041 Acer truncatum HOM05D004786 ORTHO05D005582 1.1e-37 159.8 105 80.0
CAN.G1164.25 Capsicum annuum HOM05D004786 ORTHO05D005582 1.1e-37 159.8 104 76.0
DCAR_002518 Daucus carota HOM05D004786 ORTHO05D005582 1.9e-37 159.1 104 76.9
Eucgr.C00116 Eucalyptus grandis HOM05D004786 ORTHO05D005582 1.9e-37 159.1 101 78.2
PGR142G0252 Punica granatum HOM05D004786 ORTHO05D005582 1.9e-37 159.1 102 74.5
Solyc02g078300.3 Solanum lycopersicum HOM05D004786 ORTHO05D005582 1.9e-37 159.1 104 76.0
Sopen02g023150 Solanum pennellii HOM05D004786 ORTHO05D005582 1.9e-37 159.1 104 76.0
PGSC0003DMG400029688 Solanum tuberosum HOM05D004786 ORTHO05D005582 1.9e-37 159.1 104 76.0
MSTRG.21673 Avicennia marina HOM05D004786 ORTHO05D005582 2.5e-37 158.7 105 79.0
Nitab4.5_0002158g0250 Nicotiana tabacum HOM05D004786 ORTHO05D005582 3.3e-37 158.3 104 76.0
Nitab4.5_0007940g0040 Nicotiana tabacum HOM05D004786 ORTHO05D005582 3.3e-37 158.3 104 76.0
Rhsim01G0289800 Rhododendron simsii HOM05D004786 ORTHO05D005582 3.3e-37 158.3 104 75.0
TAR636G2395 Trochodendron aralioides HOM05D004786 ORTHO05D005582 3.3e-37 158.3 104 76.9
Rhsim13G0006100 Rhododendron simsii HOM05D004786 ORTHO05D005582 4.3e-37 157.9 104 80.8
CSS0001467 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 7.3e-37 157.1 104 76.0
CSS0006628 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 7.3e-37 157.1 104 76.0
Oeu047382.1 Olea europaea HOM05D004786 ORTHO05D005582 7.3e-37 157.1 104 76.0
Migut.D00095 Erythranthe guttata HOM05D004786 ORTHO05D005582 9.5e-37 156.8 104 75.0
Actinidia21008 Actinidia chinensis HOM05D004395 ORTHO05D005234 1.2e-36 156.4 106 76.4
Peaxi162Scf00736g00421 Petunia axillaris HOM05D004786 ORTHO05D005582 1.2e-36 156.4 104 75.0
Solyc02g078285.1 Solanum lycopersicum HOM05D004786 ORTHO05D005582 3.6e-36 154.8 104 75.0
CANSAT01G2201 Cannabis sativa HOM05D004786 ORTHO05D005582 6.1e-36 154.1 102 78.4
Aqoxy5G00800 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 8.0e-36 153.7 104 75.0
FAN14G2614 Fragaria x ananassa HOM05D004786 ORTHO05D005582 1.0e-35 153.3 85 87.1
Ah.11g049360 Amaranthus hybridus HOM05D004786 ORTHO05D005582 1.4e-35 152.9 105 75.2
Medtr1g087370 Medicago truncatula HOM05D004786 ORTHO05D005582 1.4e-35 152.9 104 76.9
Psat6g162520 Pisum sativum HOM05D004786 ORTHO05D005582 1.8e-35 152.5 105 79.0
Atru.chr2.1244 Acer truncatum HOM05D004786 ORTHO05D005582 3.0e-35 151.8 105 75.2
vmacro15120 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 3.0e-35 151.8 104 73.1
ECA248G3582 Erigeron canadensis HOM05D004786 ORTHO05D005582 4.0e-35 151.4 104 76.0
SGA_v2.0_scaffold376G50268 Striga asiatica HOM05D004786 ORTHO05D005582 6.8e-35 150.6 111 71.2
Nn3g21644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 8.9e-35 150.2 104 72.1
GSVIVG01028095001 Vitis vinifera HOM05D004786 ORTHO05D005582 8.9e-35 150.2 122 66.4
Atru.chr5.1040 Acer truncatum HOM05D004786 ORTHO05D005582 1.2e-34 149.8 105 75.2
Actinidia21415 Actinidia chinensis HOM05D004786 ORTHO05D005582 1.2e-34 149.8 108 75.0
Hma1.2p1_0089F.1_g045460 Hydrangea macrophylla HOM05D004786 ORTHO05D005582 1.2e-34 149.8 102 75.5
Atru.chr2.1242 Acer truncatum HOM05D004786 ORTHO05D005582 1.5e-34 149.4 105 75.2
Oeu005869.1 Olea europaea HOM05D004786 ORTHO05D005582 5.7e-34 147.5 104 70.2
AUR62024675 Chenopodium quinoa HOM05D004786 ORTHO05D005582 7.5e-34 147.1 104 72.1
unitig_736.g22945 Utricularia gibba HOM05D004786 ORTHO05D005582 7.5e-34 147.1 119 67.2
EL10As5g23505 Beta vulgaris HOM05D004786 ORTHO05D005582 9.8e-34 146.7 105 72.4
CDE02G4247 Ceratophyllum demersum HOM05D004786 ORTHO05D005582 9.8e-34 146.7 104 74.0
SEGI_16103 Sequoiadendron giganteum HOM05D004786 ORTHO05D005582 1.7e-33 146.0 104 68.3
PSO478G0620 Papaver somniferum HOM05D004786 ORTHO05D005582 1.1e-32 143.3 106 68.9
PSO017G1185 Papaver somniferum HOM05D004786 ORTHO05D005582 7.0e-32 140.6 106 67.9
DCAR_030468 Daucus carota HOM05D004786 ORTHO05D005582 1.2e-31 139.8 96 75.0
Aqoxy2G02794 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 5.9e-31 137.5 97 68.0
Os01g0338100 Oryza sativa ssp. japonica HOM05D004786 ORTHO05D005582 5.9e-31 137.5 85 78.8
Hund02934 Selenicereus undatus HOM05D004786 ORTHO05D005582 5.9e-31 137.5 142 55.6
Zm00001eb131310 Zea mays HOM05D004786 ORTHO05D005582 5.9e-31 137.5 85 78.8
PSO478G2484 Papaver somniferum HOM05D004786 ORTHO05D005582 7.8e-31 137.1 106 67.0
SalBow3G4092 Salvia bowleyana HOM05D004786 ORTHO05D005582 1.3e-30 136.3 104 73.1
Sc05g0000530 Simmondsia chinensis HOM05D004786 ORTHO05D005582 2.3e-30 135.6 107 68.2
PSO384G2419 Papaver somniferum HOM05D004786 ORTHO05D005582 3.9e-30 134.8 107 63.6
AL1G12010 Arabidopsis lyrata HOM05D004786 ORTHO05D005582 5.0e-30 134.4 105 67.6
CARHR001960 Cardamine hirsuta HOM05D004786 ORTHO05D005582 5.0e-30 134.4 101 70.3
Sp1g01660 Schrenkiella parvula HOM05D004786 ORTHO05D005582 1.1e-29 133.3 104 66.3
Carub.0001s0173 Capsella rubella HOM05D004786 ORTHO05D005582 1.9e-29 132.5 102 67.6
PSO339G0583 Papaver somniferum HOM05D004786 ORTHO05D005582 1.9e-29 132.5 107 62.6
Thhalv10009111m.g Eutrema salsugineum HOM05D004786 ORTHO05D005582 2.5e-29 132.1 104 65.4
ATR0068G032 Amborella trichopoda HOM05D004786 ORTHO05D005582 1.2e-28 129.8 95 70.5
BcaC07g36997 Brassica carinata HOM05D004786 ORTHO05D005582 1.6e-28 129.4 104 61.5
C08p00190 Brassica napus HOM05D004786 ORTHO05D005582 1.6e-28 129.4 104 61.5
BolC8t46821H Brassica oleracea HOM05D004786 ORTHO05D005582 1.6e-28 129.4 104 61.5
FvH4_6g14960 Fragaria vesca HOM05D004786 ORTHO05D005582 2.1e-28 129.0 67 91.0
BolC5t28917H Brassica oleracea HOM05D004786 ORTHO05D005582 2.8e-28 128.6 91 69.2
C05p01350 Brassica napus HOM05D004786 ORTHO05D005582 3.6e-28 128.3 91 69.2
AUR62011833 Chenopodium quinoa HOM05D004786 ORTHO05D005582 3.6e-28 128.3 92 70.7
AT1G02680 Arabidopsis thaliana HOM05D004786 ORTHO05D005582 4.7e-28 127.9 104 62.5
A10p01370 Brassica napus HOM05D004786 ORTHO05D005582 1.0e-27 126.7 104 59.6
HPP92_025545 Vanilla planifolia HOM05D004786 ORTHO05D005582 1.0e-27 126.7 90 70.0
A08p37600 Brassica napus HOM05D004786 ORTHO05D005582 1.4e-27 126.3 104 61.5
BraA08t35657Z Brassica rapa HOM05D004786 ORTHO05D005582 1.4e-27 126.3 104 61.5
BraA10t42413Z Brassica rapa HOM05D004786 ORTHO05D005582 5.2e-27 124.4 106 62.3
Aqoxy293s004 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 8.9e-27 123.6 134 55.2
arahy.Tifrunner.gnm1.ann1.8ER521 Arachis hypogaea HOM05D004786 ORTHO05D005582 1.2e-26 123.2 104 68.3
SHI21583 Sapria himalayana HOM05D004786 ORTHO05D005582 1.2e-26 123.2 89 68.5
Gohir.A07G224200 Gossypium hirsutum HOM05D004786 ORTHO05D005582 1.5e-26 122.9 67 85.1
arahy.Tifrunner.gnm1.ann1.NH5DW8 Arachis hypogaea HOM05D004786 ORTHO05D005582 1.7e-25 119.4 104 67.3
Mapoly0033s0143 Marchantia polymorpha HOM05D004786 ORTHO05D005582 4.9e-25 117.9 88 61.4
TAR633G1250 Trochodendron aralioides HOM05D004786 ORTHO05D005582 6.4e-25 117.5 70 77.1
Lsat_1_v5_gn_3_69620 Lactuca sativa HOM05D004786 ORTHO05D005582 1.1e-24 116.7 104 63.5
AagrBONN_evm.TU.Sc2ySwM_362.2238 Anthoceros agrestis HOM05D004786 ORTHO05D005582 1.9e-24 115.9 84 59.5
Aa31LG1G9890 Aethionema arabicum HOM05D004786 ORTHO05D005582 3.2e-24 115.2 136 50.7
VMungo0720G3029 Vigna mungo HOM05D003159 ORTHO05D005582 4.1e-24 114.8 61 93.4
AagrBONN_evm.TU.Sc2ySwM_344.2318 Anthoceros agrestis HOM05D004786 ORTHO05D005582 5.4e-24 114.4 84 59.5
Pp3c10_23650 Physcomitrium patens HOM05D004786 ORTHO05D005582 9.2e-24 113.6 88 56.8
AagrBONN_evm.TU.Sc2ySwM_228.4423 Anthoceros agrestis HOM05D004786 ORTHO05D005582 2.0e-23 112.5 88 56.8
Pp3c20_20300 Physcomitrium patens HOM05D004786 ORTHO05D005582 2.0e-23 112.5 90 56.7
BcaB03g15799 Brassica carinata HOM05D004786 ORTHO05D005582 2.7e-23 112.1 92 64.1
Mapoly0066s0092 Marchantia polymorpha HOM05D004786 ORTHO05D005582 1.3e-22 109.8 104 54.8
SMO172G0161 Selaginella moellendorffii HOM05D004786 ORTHO05D005582 1.1e-21 106.7 85 58.8
HPP92_025439 Vanilla planifolia HOM05D004786 ORTHO05D005582 3.3e-21 105.1 63 74.6
CBR_g31434 Chara braunii HOM05D004977 ORTHO05D006454 7.3e-21 104.0 82 56.1
Actinidia12745 Actinidia chinensis HOM05D004786 ORTHO05D005582 9.8e-18 93.6 57 78.9
PGSC0003DMG400028899 Solanum tuberosum HOM05D000457 ORTHO05D000560 4.9e-17 91.3 57 73.7
MD02G1287100 Malus domestica HOM05D004786 ORTHO05D005582 1.4e-16 89.7 49 85.7
BcaB03g13505 Brassica carinata HOM05D004786 ORTHO05D005582 2.4e-16 89.0 53 77.4
MCO05G258 Micromonas commoda HOM05D004786 ORTHO05D005582 4.1e-16 88.2 92 45.7
HanXRQChr04g0094601 Helianthus annuus HOM05D004786 ORTHO05D005582 7.1e-16 87.4 58 74.1
Dinv10078 Davidia involucrata HOM05D004786 ORTHO05D005582 2.7e-15 85.5 52 78.8
PRCOL_00006976 Prasinoderma coloniale HOM05D004786 ORTHO05D005582 6.0e-15 84.3 93 41.9
arahy.Tifrunner.gnm1.ann1.17AZVE Arachis hypogaea HOM05D004786 ORTHO05D005582 6.6e-14 80.9 51 82.4
Solyc06g036200.2 Solanum lycopersicum HOM05D004786 ORTHO05D005582 1.1e-13 80.1 74 55.4
Haze_27741 Corylus avellana HOM05D004786 ORTHO05D005582 8.9e-11 70.5 75 42.7
MD02G1287200 Malus domestica HOM05D004786 ORTHO05D005582 8.9e-11 70.5 47 76.6
SGA_v2.0_scaffold334G49058 Striga asiatica HOM05D004395 ORTHO05D005234 2.2e-09 65.9 36 80.6
Cre04.g222100 Chlamydomonas reinhardtii HOM05D004786 ORTHO05D005582 3.8e-09 65.1 90 41.1
Gohir.D07G231500 Gossypium hirsutum HOM05D004786 ORTHO05D005582 6.4e-09 64.3 57 63.2
Cfa022415 Carpinus fangiana HOM05D004786 ORTHO05D005582 6.0e-07 57.8 73 35.6


User provided reference genes

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