Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G000050 Glycine max HOM05D003438 ORTHO05D004235 5.5e-78 294.3 152 100.0
Glyma.03G011400 Glycine max HOM05D003438 ORTHO05D004235 1.7e-50 203.0 105 97.1
Glyma.08G368201 Glycine max HOM05D003438 ORTHO05D004235 1.1e-49 200.3 105 97.1
Glyma.15G277066 Glycine max HOM05D003438 ORTHO05D004235 2.5e-46 189.1 109 90.8
Glyma.06G325402 Glycine max HOM05D003438 ORTHO05D004235 8.0e-29 131.0 66 97.0
Glyma.06G325566 Glycine max HOM05D003438 ORTHO05D004235 8.0e-29 131.0 66 97.0
Glyma.13G107000 Glycine max HOM05D003438 ORTHO05D004235 2.3e-28 129.4 66 95.5
VMungo1080G0040 Vigna mungo HOM05D003438 ORTHO05D000002 6.8e-28 127.9 123 59.3
Phvul.005G022900 Phaseolus vulgaris HOM05D003438 ORTHO05D004235 8.8e-28 127.5 123 58.5
Glyma.08G368001 Glycine max HOM05D003438 ORTHO05D004235 1.2e-27 127.1 67 92.5
Glyma.15G276800 Glycine max HOM05D003438 ORTHO05D004235 1.2e-27 127.1 123 59.3
Lj4g0011234 Lotus japonicus HOM05D003438 ORTHO05D004235 4.4e-27 125.2 123 56.9
Medtr8g069840 Medicago truncatula HOM05D003438 ORTHO05D004235 7.5e-27 124.4 122 58.2
arahy.Tifrunner.gnm1.ann1.2XHE7W Arachis hypogaea HOM05D003438 ORTHO05D004235 6.3e-26 121.3 122 55.7
arahy.Tifrunner.gnm1.ann1.KJ79M0 Arachis hypogaea HOM05D003438 ORTHO05D004235 6.3e-26 121.3 122 55.7
Lalb_Chr16g0392021 Lupinus albus HOM05D003438 ORTHO05D004235 1.1e-25 120.6 122 55.7
Psat4g113480 Pisum sativum HOM05D003438 ORTHO05D004235 2.4e-25 119.4 122 55.7
MELO3C012178.2 Cucumis melo HOM05D003438 ORTHO05D004235 5.4e-25 118.2 137 48.9
Ca_22511_v3 Cicer arietinum L. HOM05D003438 ORTHO05D004235 2.0e-24 116.3 65 83.1
Prupe.1G298000 Prunus persica HOM05D003438 ORTHO05D004235 4.5e-24 115.2 137 48.9
QL03p047172 Quercus lobata HOM05D003438 ORTHO05D004235 4.5e-24 115.2 137 48.2
ClCG05G023390 Citrullus lanatus HOM05D003438 ORTHO05D004235 1.0e-23 114.0 137 47.4
Actinidia30181 Actinidia chinensis HOM05D003438 ORTHO05D004235 1.3e-23 113.6 137 46.7
CsaV3_5G033620 Cucumis sativus L. HOM05D003438 ORTHO05D004235 1.3e-23 113.6 137 47.4
Potri.010G135500 Populus trichocarpa HOM05D003438 ORTHO05D004235 1.3e-23 113.6 123 52.8
Manes.14G092500 Manihot esculenta HOM05D003438 ORTHO05D004235 1.7e-23 113.2 137 48.2
Dinv16579 Davidia involucrata HOM05D003438 ORTHO05D004235 2.2e-23 112.8 137 46.7
Dinv16582 Davidia involucrata HOM05D003438 ORTHO05D004235 2.2e-23 112.8 137 46.7
TWI75G0189 Tripterygium wilfordii HOM05D003438 ORTHO05D004235 2.2e-23 112.8 122 52.5
Cfa008813 Carpinus fangiana HOM05D003438 ORTHO05D004235 3.8e-23 112.1 137 46.0
CSS0041395 Camellia sinensis var. sinensis HOM05D003438 ORTHO05D004235 5.0e-23 111.7 122 53.3
Ciclev10030492m.g Citrus clementina HOM05D003438 ORTHO05D004235 5.0e-23 111.7 137 46.7
Sabra10G0104100 Salix brachista HOM05D003438 ORTHO05D004235 5.0e-23 111.7 122 52.5
Lj3C1025G4 Lonicera japonica HOM05D003438 ORTHO05D004235 6.5e-23 111.3 122 52.5
Sed0018972 Sechium edule HOM05D003438 ORTHO05D004235 6.5e-23 111.3 137 46.7
Atru.chr11.1518 Acer truncatum HOM05D003438 ORTHO05D004235 8.5e-23 110.9 137 47.4
CiPaw.05G119100 Carya illinoinensis HOM05D003438 ORTHO05D004235 1.1e-22 110.5 122 50.8
GSVIVG01010141001 Vitis vinifera HOM05D003438 ORTHO05D004235 1.1e-22 110.5 81 66.7
Ah.12g061010 Amaranthus hybridus HOM05D003438 ORTHO05D004235 1.5e-22 110.2 137 46.0
EL10Ac6g14628 Beta vulgaris HOM05D003438 ORTHO05D004235 1.5e-22 110.2 137 46.0
RcHm_v2.0_Chr4g0436931 Rosa chinensis HOM05D003438 ORTHO05D004235 1.5e-22 110.2 137 47.4
HPP92_019427 Vanilla planifolia HOM05D003438 ORTHO05D004235 1.5e-22 110.2 80 67.5
FAN12G2600 Fragaria x ananassa HOM05D003438 ORTHO05D004235 1.9e-22 109.8 137 46.7
MD16G1052600 Malus domestica HOM05D003438 ORTHO05D004235 1.9e-22 109.8 137 46.7
Aqoxy3G00578 Aquilegia oxysepala HOM05D005717 ORTHO05D004235 2.5e-22 109.4 122 52.5
Hma1.2p1_0762F.1_g214440 Hydrangea macrophylla HOM05D003438 ORTHO05D004235 3.2e-22 109.0 137 45.3
Eucgr.G02402 Eucalyptus grandis HOM05D003438 ORTHO05D004235 4.2e-22 108.6 122 50.8
CANSAT64G0670 Cannabis sativa HOM05D003438 ORTHO05D004235 5.5e-22 108.2 81 65.4
FvH4_4g28800 Fragaria vesca HOM05D003438 ORTHO05D004235 7.2e-22 107.8 137 46.0
Glyma.01G000248 Glycine max HOM05D003438 ORTHO05D004235 7.2e-22 107.8 107 58.9
ATR0691G173 Amborella trichopoda HOM05D003438 ORTHO05D004235 1.2e-21 107.1 80 67.5
FAN17G0827 Fragaria x ananassa HOM05D003438 ORTHO05D004235 1.2e-21 107.1 160 41.9
Pp3c9_10620 Physcomitrium patens HOM05D003438 ORTHO05D004235 1.2e-21 107.1 80 65.0
DCAR_023734 Daucus carota HOM05D003438 ORTHO05D004235 1.6e-21 106.7 137 43.8
Hund25139 Selenicereus undatus HOM05D003438 ORTHO05D004235 1.6e-21 106.7 137 44.5
FAN07G2974 Fragaria x ananassa HOM05D003438 ORTHO05D004235 2.8e-21 105.9 137 45.3
HanXRQChr16g0528311 Helianthus annuus HOM05D003438 ORTHO05D004235 2.8e-21 105.9 122 49.2
Thecc.02G318900 Theobroma cacao HOM05D003438 ORTHO05D004235 2.8e-21 105.9 122 49.2
COL.COLO4_27762 Corchorus olitorius HOM05D003438 ORTHO05D004235 3.6e-21 105.5 122 49.2
Nn4g23588 Nelumbo nucifera HOM05D003438 ORTHO05D004235 3.6e-21 105.5 80 63.8
Rhsim09G0118400 Rhododendron simsii HOM05D003438 ORTHO05D004235 3.6e-21 105.5 145 43.4
Cc11_g11300 Coffea canephora HOM05D003438 ORTHO05D004235 8.0e-21 104.4 122 48.4
Duzib251G0072 Durio zibethinus HOM05D003438 ORTHO05D004235 8.0e-21 104.4 122 50.0
PGR119G1138 Punica granatum HOM05D003438 ORTHO05D004235 8.0e-21 104.4 122 47.5
Nn4g23587 Nelumbo nucifera HOM05D003438 ORTHO05D004235 1.0e-20 104.0 71 70.4
Lsat_1_v5_gn_4_21341 Lactuca sativa HOM05D003438 ORTHO05D004235 1.4e-20 103.6 122 48.4
Peaxi162Scf00396g01321 Petunia axillaris HOM05D003438 ORTHO05D004235 1.4e-20 103.6 122 49.2
THA.LOC104821983 Tarenaya hassleriana HOM05D003438 ORTHO05D004235 1.4e-20 103.6 80 65.0
TAR629G1044 Trochodendron aralioides HOM05D003438 ORTHO05D004235 1.4e-20 103.6 66 75.8
AagrBONN_evm.TU.Sc2ySwM_228.2269 Anthoceros agrestis HOM05D003438 ORTHO05D004235 1.8e-20 103.2 139 43.9
AUR62007840 Chenopodium quinoa HOM05D003438 ORTHO05D004235 1.8e-20 103.2 133 45.9
AUR62003034 Chenopodium quinoa HOM05D003438 ORTHO05D004235 2.3e-20 102.8 133 45.9
PSO478G2917 Papaver somniferum HOM05D003438 ORTHO05D004235 2.3e-20 102.8 80 63.8
Cpa.g.sc570.4 Carica papaya HOM05D003438 ORTHO05D004235 3.0e-20 102.4 65 75.4
ECA234G3211 Erigeron canadensis HOM05D003438 ORTHO05D004235 3.0e-20 102.4 80 61.2
Sc04g0007220 Simmondsia chinensis HOM05D003438 ORTHO05D004235 3.0e-20 102.4 137 44.5
Hma1.2p1_0021F.1_g014340 Hydrangea macrophylla HOM05D003438 ORTHO05D004235 5.2e-20 101.7 133 45.1
PSO017G4740 Papaver somniferum HOM05D003438 ORTHO05D004235 5.2e-20 101.7 80 62.5
Sp5g24020 Schrenkiella parvula HOM05D003438 ORTHO05D004235 5.2e-20 101.7 137 43.1
Gorai.005G148400 Gossypium raimondii HOM05D003438 ORTHO05D004235 6.8e-20 101.3 122 46.7
AT1G68890 Arabidopsis thaliana HOM05D003438 ORTHO05D004235 8.8e-20 100.9 137 43.1
C02p25570 Brassica napus HOM05D003438 ORTHO05D004235 8.8e-20 100.9 137 43.1
BolC2t08622H Brassica oleracea HOM05D003438 ORTHO05D004235 8.8e-20 100.9 137 43.1
Haze_11830 Corylus avellana HOM05D003438 ORTHO05D004235 8.8e-20 100.9 132 46.2
Thhalv10017999m.g Eutrema salsugineum HOM05D003438 ORTHO05D004235 8.8e-20 100.9 137 43.1
Nitab4.5_0000149g0230 Nicotiana tabacum HOM05D003438 ORTHO05D004235 8.8e-20 100.9 80 62.5
Sopen04g001190 Solanum pennellii HOM05D003438 ORTHO05D004235 8.8e-20 100.9 80 63.8
Carub.0002s1551 Capsella rubella HOM05D003438 ORTHO05D004235 1.2e-19 100.5 137 42.3
CARHR061750 Cardamine hirsuta HOM05D003438 ORTHO05D004235 1.2e-19 100.5 137 42.3
Zm00001eb245360 Zea mays HOM05D003438 ORTHO05D004235 1.2e-19 100.5 66 71.2
BcaB05g24430 Brassica carinata HOM05D003438 ORTHO05D004235 1.5e-19 100.1 137 42.3
Migut.L01140 Erythranthe guttata HOM05D003438 ORTHO05D004235 1.5e-19 100.1 110 50.9
SalBow8G3833 Salvia bowleyana HOM05D003438 ORTHO05D004235 1.5e-19 100.1 119 48.7
A02p15460 Brassica napus HOM05D003438 ORTHO05D004235 2.0e-19 99.8 137 42.3
BraA02t06607Z Brassica rapa HOM05D003438 ORTHO05D004235 2.0e-19 99.8 137 42.3
Mapoly0195s0004 Marchantia polymorpha HOM05D003438 ORTHO05D004235 2.0e-19 99.8 80 61.2
Cc11_g11320 Coffea canephora HOM05D003438 ORTHO05D004235 4.4e-19 98.6 122 47.5
MSTRG.795 Avicennia marina HOM05D003438 ORTHO05D004235 9.8e-19 97.4 80 60.0
SEGI_27375 Sequoiadendron giganteum HOM05D003438 ORTHO05D004235 9.8e-19 97.4 80 60.0
SEGI_34733 Sequoiadendron giganteum HOM05D003438 ORTHO05D004235 9.8e-19 97.4 80 60.0
SGA_v2.0_scaffold16G07841 Striga asiatica HOM05D003438 ORTHO05D004235 1.3e-18 97.1 66 68.2
Aa31sc12G150 Aethionema arabicum HOM05D003438 ORTHO05D004235 1.8e-17 93.2 133 42.9
unitig_699.g19901 Utricularia gibba HOM05D003438 ORTHO05D004235 3.1e-17 92.4 62 69.4
SMO270G0066 Selaginella moellendorffii HOM05D003438 ORTHO05D004235 4.1e-17 92.0 80 53.8
CAN.G263.1 Capsicum annuum HOM05D003438 ORTHO05D004235 1.2e-16 90.5 82 58.5
CBR_g48051 Chara braunii HOM05D003553 ORTHO05D005072 1.2e-16 90.5 66 63.6
Nitab4.5_0000591g0100 Nicotiana tabacum HOM05D003438 ORTHO05D004235 2.0e-16 89.7 81 58.0
HPP92_019404 Vanilla planifolia HOM05D003438 ORTHO05D004235 1.0e-15 87.4 65 66.2
PRCOL_00004179 Prasinoderma coloniale HOM05D003438 ORTHO05D004235 1.3e-15 87.0 80 51.2
Glyma.15G277502 Glycine max HOM05D003438 ORTHO05D004235 1.6e-13 80.1 45 93.3
MCO05G676 Micromonas commoda HOM05D003438 ORTHO05D004235 4.0e-12 75.5 63 57.1
Cre16.g659050 Chlamydomonas reinhardtii HOM05D003438 ORTHO05D004235 6.8e-12 74.7 77 51.9


User provided reference genes

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