Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G282100 Glycine max HOM05D007291 ORTHO05D009038 1.3e-236 823.2 418 100.0
VMungo1383G1759 Vigna mungo HOM05D003919 ORTHO05D009038 2.4e-126 456.8 406 66.0
Phvul.003G005900 Phaseolus vulgaris HOM05D007291 ORTHO05D009038 6.4e-124 448.7 406 65.0
Lj2g0016301 Lotus japonicus HOM05D007291 ORTHO05D009038 5.5e-91 339.3 385 51.4
Psat6g098880 Pisum sativum HOM05D007291 ORTHO05D009038 5.4e-70 269.6 356 46.9
TPR.G8243 Trifolium pratense HOM05D007291 ORTHO05D009038 1.2e-69 268.5 358 45.8
Ca_00776_v3 Cicer arietinum L. HOM05D000091 ORTHO05D009038 2.7e-69 267.3 356 46.6
arahy.Tifrunner.gnm1.ann1.HW3SC4 Arachis hypogaea HOM05D007291 ORTHO05D009038 2.9e-68 263.8 339 46.9
Lalb_Chr02g0154661 Lupinus albus HOM05D007291 ORTHO05D009038 2.3e-65 254.2 333 46.5
Cc07_g13560 Coffea canephora HOM05D007291 ORTHO05D009038 1.2e-64 251.9 383 40.5
Ca_26721_v3 Cicer arietinum L. HOM05D007291 ORTHO05D009038 1.8e-62 244.6 308 49.0
CSS0009024 Camellia sinensis var. sinensis HOM05D007956 ORTHO05D009038 7.0e-62 242.7 376 37.5
Ah.14g088580 Amaranthus hybridus HOM05D007291 ORTHO05D009038 1.5e-56 224.9 345 39.7
TWI74G1032 Tripterygium wilfordii HOM05D007291 ORTHO05D009038 2.7e-53 214.2 306 42.5
HanXRQChr14g0444491 Helianthus annuus HOM05D007291 ORTHO05D009038 3.0e-52 210.7 330 38.5
Migut.H01009 Erythranthe guttata HOM05D007291 ORTHO05D009038 7.3e-51 206.1 383 34.7
Medtr1g037260 Medicago truncatula HOM05D007291 ORTHO05D009038 1.6e-50 204.9 348 39.4
AUR62012554 Chenopodium quinoa HOM05D007291 ORTHO05D009038 8.0e-50 202.6 320 40.6
CiPaw.01G118600 Carya illinoinensis HOM05D007291 ORTHO05D009038 5.8e-48 196.4 271 44.3
CARHR058230 Cardamine hirsuta HOM05D007291 ORTHO05D009038 3.2e-46 190.7 322 38.2
HPP92_001299 Vanilla planifolia HOM05D007291 ORTHO05D009038 3.2e-46 190.7 325 35.7
AUR62014645 Chenopodium quinoa HOM05D007291 ORTHO05D009038 9.2e-46 189.1 319 39.8
MSTRG.10708 Avicennia marina HOM05D007291 ORTHO05D009038 2.3e-44 184.5 329 36.8
FvH4_5g33100 Fragaria vesca HOM05D007291 ORTHO05D009038 2.3e-44 184.5 269 40.5
Sc03g0007430 Simmondsia chinensis HOM05D000068 ORTHO05D004691 5.0e-44 183.3 307 37.1
Oeu032258.1 Olea europaea HOM05D007291 ORTHO05D009038 1.1e-43 182.2 345 35.1
Sabra04G0061000 Salix brachista HOM05D007291 ORTHO05D009038 1.1e-43 182.2 285 38.6
Potri.004G090800 Populus trichocarpa HOM05D007291 ORTHO05D009038 1.9e-43 181.4 276 39.5
SGA_v2.0_scaffold159G37611 Striga asiatica HOM05D007291 ORTHO05D009038 1.9e-43 181.4 333 34.5
RcHm_v2.0_Chr7g0231271 Rosa chinensis HOM05D007291 ORTHO05D009038 1.6e-42 178.3 267 40.4
Rhsim08G0018600 Rhododendron simsii HOM05D001542 ORTHO05D001416 2.1e-42 177.9 254 40.9
FAN08G0725 Fragaria x ananassa HOM05D007291 ORTHO05D009038 2.8e-42 177.6 274 40.9
Cpa.g.sc116.47 Carica papaya HOM05D007291 ORTHO05D009038 3.6e-42 177.2 274 41.2
ClCG01G008820 Citrullus lanatus HOM05D007291 ORTHO05D009038 8.1e-42 176.0 255 42.4
Nitab4.5_0004679g0050 Nicotiana tabacum HOM05D007291 ORTHO05D009038 2.3e-41 174.5 203 42.9
CsaV3_5G024140 Cucumis sativus L. HOM05D007291 ORTHO05D009038 3.1e-41 174.1 255 41.6
PGR044G2558 Punica granatum HOM05D007291 ORTHO05D009038 3.1e-41 174.1 298 35.2
A02p13610 Brassica napus HOM05D007291 ORTHO05D009038 4.0e-41 173.7 332 37.3
BraA02t06420Z Brassica rapa HOM05D007291 ORTHO05D009038 4.0e-41 173.7 332 37.3
SHI30104 Sapria himalayana HOM05D007291 ORTHO05D009038 5.2e-41 173.3 304 36.2
C02p21950 Brassica napus HOM05D007291 ORTHO05D009038 2.0e-40 171.4 330 36.7
BolC2t08326H Brassica oleracea HOM05D007291 ORTHO05D009038 2.0e-40 171.4 330 36.7
BcaC03g14744 Brassica carinata HOM05D007291 ORTHO05D009038 3.4e-40 170.6 330 36.7
CAN.G1181.19 Capsicum annuum HOM05D007291 ORTHO05D009038 4.4e-40 170.2 333 33.9
Medtr1g036840 Medicago truncatula HOM05D007291 ORTHO05D009038 5.8e-40 169.9 196 48.0
Atru.chr13.2096 Acer truncatum HOM05D007291 ORTHO05D009038 2.2e-39 167.9 227 42.7
Sed0024711 Sechium edule HOM05D007291 ORTHO05D009038 8.3e-39 166.0 262 40.5
SalBow1G1723 Salvia bowleyana HOM05D007291 ORTHO05D009038 2.4e-38 164.5 339 34.8
Hma1.2p1_0524F.1_g172380 Hydrangea macrophylla HOM05D007291 ORTHO05D009038 5.4e-38 163.3 230 41.3
Hma1.2p1_1840F.1_g304950 Hydrangea macrophylla HOM05D007291 ORTHO05D009038 9.2e-38 162.5 230 40.9
Duzib268G1497 Durio zibethinus HOM05D007291 ORTHO05D009038 1.2e-37 162.2 277 36.1
TAR371G0694 Trochodendron aralioides HOM05D007291 ORTHO05D009038 1.2e-37 162.2 206 46.6
RcHm_v2.0_Chr7g0231291 Rosa chinensis HOM05D007291 ORTHO05D009038 3.5e-37 160.6 240 40.4
Prupe.4G237400 Prunus persica HOM05D007291 ORTHO05D009038 6.0e-37 159.8 239 38.9
Aqoxy3G02430 Aquilegia oxysepala HOM05D007291 ORTHO05D009038 2.3e-36 157.9 286 37.4
QL02p057926 Quercus lobata HOM05D007291 ORTHO05D009038 3.0e-36 157.5 205 45.9
QL93p0100_0337 Quercus lobata HOM05D007291 ORTHO05D009038 3.0e-36 157.5 205 45.9
Ciclev10011485m.g Citrus clementina HOM05D007291 ORTHO05D009038 3.9e-36 157.1 301 35.5
FAN04G0610 Fragaria x ananassa HOM05D007291 ORTHO05D009038 5.1e-36 156.8 221 42.1
Haze_11634 Corylus avellana HOM05D007291 ORTHO05D009038 1.5e-35 155.2 204 43.1
Nitab4.5_0007769g0010 Nicotiana tabacum HOM05D007291 ORTHO05D009038 1.9e-35 154.8 198 43.9
THA.LOC104805618 Tarenaya hassleriana HOM05D007291 ORTHO05D009038 2.5e-35 154.5 269 37.9
QL08p010035 Quercus lobata HOM05D007291 ORTHO05D009038 1.6e-34 151.8 227 41.0
ATR0829G190 Amborella trichopoda HOM05D007291 ORTHO05D009038 2.1e-34 151.4 330 31.5
PGSC0003DMG401014601 Solanum tuberosum HOM05D007291 ORTHO05D009038 8.1e-34 149.4 228 38.2
unitig_21.g20398 Utricularia gibba HOM05D007291 ORTHO05D009038 1.1e-33 149.1 291 35.7
Manes.16G125800 Manihot esculenta HOM05D007291 ORTHO05D009038 1.8e-33 148.3 205 41.5
Dinv28212 Davidia involucrata HOM05D007291 ORTHO05D009038 6.8e-33 146.4 205 41.5
Solyc05g051340.3 Solanum lycopersicum HOM05D007291 ORTHO05D009038 1.5e-32 145.2 228 36.4
Carub.0002s1237 Capsella rubella HOM05D007291 ORTHO05D009038 5.8e-32 143.3 278 35.3
Sopen05g029730 Solanum pennellii HOM05D007291 ORTHO05D009038 8.4e-31 139.4 228 35.5
CDE02G1611 Ceratophyllum demersum HOM05D007291 ORTHO05D009038 1.1e-30 139.0 258 34.9
CANSAT64G0946 Cannabis sativa HOM05D007291 ORTHO05D009038 2.4e-30 137.9 224 37.1
Gorai.009G366400 Gossypium raimondii HOM05D007291 ORTHO05D009038 4.1e-30 137.1 228 36.8
AT1G66345 Arabidopsis thaliana HOM05D007291 ORTHO05D009038 1.2e-29 135.6 243 35.4
Thhalv10018418m.g Eutrema salsugineum HOM05D007291 ORTHO05D009038 1.2e-29 135.6 249 36.9
Lsat_1_v5_gn_2_69440 Lactuca sativa HOM05D007291 ORTHO05D009038 6.0e-29 133.3 235 37.0
Sp5g21370 Schrenkiella parvula HOM05D007291 ORTHO05D009038 7.8e-29 132.9 239 36.4
Thecc.07G187000 Theobroma cacao HOM05D007291 ORTHO05D009038 6.6e-28 129.8 212 37.3
SEGI_32122 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 1.9e-27 128.3 262 30.2
Medtr1g037080 Medicago truncatula HOM05D007291 ORTHO05D009038 7.3e-27 126.3 187 43.3
FAN18G3657 Fragaria x ananassa HOM05D007291 ORTHO05D009038 2.8e-26 124.4 171 41.5
Aa31LG2G3020 Aethionema arabicum HOM05D007291 ORTHO05D009038 1.8e-25 121.7 234 36.3
Zm00001eb122930 Zea mays HOM05D007291 ORTHO05D009038 2.4e-25 121.3 319 30.1
Zm00001eb122940 Zea mays HOM05D007291 ORTHO05D009038 2.4e-25 121.3 319 30.1
DCAR_003433 Daucus carota HOM05D007291 ORTHO05D009038 5.2e-25 120.2 230 33.0
MBI04_g29831_MAGBIO Magnolia biondii HOM05D001170 ORTHO05D009038 4.4e-24 117.1 178 41.0
Gohir.D05G340000 Gossypium hirsutum HOM05D007291 ORTHO05D009038 3.8e-23 114.0 201 36.8
Gorai.009G365100 Gossypium raimondii HOM05D007291 ORTHO05D009038 3.8e-23 114.0 256 31.2
SEGI_06868 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 9.3e-22 109.4 262 27.5
Peaxi162Scf00939g00023 Petunia axillaris HOM05D007291 ORTHO05D009038 2.1e-21 108.2 159 37.7
Nn4g24244 Nelumbo nucifera HOM05D007291 ORTHO05D009038 2.7e-21 107.8 162 40.7
Medtr1g051695 Medicago truncatula HOM05D007291 ORTHO05D009038 3.5e-21 107.5 184 38.0
BcaB05g24168 Brassica carinata HOM05D007291 ORTHO05D009038 3.9e-20 104.0 218 34.4
Medtr0006s0260 Medicago truncatula HOM05D007291 ORTHO05D009038 3.1e-17 94.4 69 60.9
Os01g0170800 Oryza sativa ssp. japonica HOM05D007291 ORTHO05D009038 4.5e-16 90.5 165 33.3
Medtr3g448890 Medicago truncatula HOM05D007291 ORTHO05D009038 5.8e-16 90.1 112 47.3
Eucgr.K02275 Eucalyptus grandis HOM05D007291 ORTHO05D009038 1.7e-15 88.6 84 50.0
Gohir.A04G043900 Gossypium hirsutum HOM05D007291 ORTHO05D009038 2.4e-14 84.7 119 41.2
COL.COLO4_04575 Corchorus olitorius HOM05D007291 ORTHO05D009038 7.1e-14 83.2 166 33.7
AL2G24070 Arabidopsis lyrata HOM05D007291 ORTHO05D009038 1.0e-12 79.3 195 30.8
Medtr1g050145 Medicago truncatula HOM05D007291 ORTHO05D009038 2.3e-12 78.2 53 64.2
Actinidia28812 Actinidia chinensis HOM05D007291 ORTHO05D009038 4.3e-11 73.9 101 38.6
ECA238G1703 Erigeron canadensis HOM05D007291 ORTHO05D009038 1.5e-08 65.5 98 43.9
AUR62036473 Chenopodium quinoa HOM05D007390 ORTHO05D009114 6.4e-07 60.1 222 24.8
Nitab4.5_0000556g0140 Nicotiana tabacum HOM05D000162 ORTHO05D000090 6.4e-07 60.1 192 25.5
AT3G09650 Arabidopsis thaliana HOM05D000855 ORTHO05D008530 8.4e-07 59.7 175 26.3
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 1.9e-06 58.5 129 30.2
Atru.chr2.3702 Acer truncatum HOM05D007390 ORTHO05D009114 2.4e-06 58.2 185 26.5
Thhalv10018115m.g Eutrema salsugineum HOM05D004783 ORTHO05D005581 2.4e-06 58.2 329 24.3
Nitab4.5_0002726g0010 Nicotiana tabacum HOM05D004808 ORTHO05D007773 2.4e-06 58.2 239 22.2
SGA_v2.0_scaffold48G17965 Striga asiatica HOM05D003039 ORTHO05D008410 2.4e-06 58.2 236 24.6
TWI79G0736 Tripterygium wilfordii HOM05D007455 ORTHO05D009431 2.4e-06 58.2 221 29.0
CARHR084060 Cardamine hirsuta HOM05D000855 ORTHO05D008530 3.2e-06 57.8 129 30.2
Os01g0908800 Oryza sativa ssp. japonica HOM05D006980 ORTHO05D008704 3.2e-06 57.8 259 22.8
Rhsim02G0205300 Rhododendron simsii HOM05D003039 ORTHO05D008410 3.2e-06 57.8 251 21.5
Cfa017505 Carpinus fangiana HOM05D000855 ORTHO05D008530 4.2e-06 57.4 265 22.3
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 4.2e-06 57.4 129 29.5
Aa31LG3G2070 Aethionema arabicum HOM05D000855 ORTHO05D008530 5.5e-06 57.0 129 31.0
AL1G17770 Arabidopsis lyrata HOM05D006354 ORTHO05D007773 5.5e-06 57.0 93 33.3
SalBow6G2874 Salvia bowleyana HOM05D004783 ORTHO05D005581 5.5e-06 57.0 383 25.6
Eucgr.D00236 Eucalyptus grandis HOM05D003039 ORTHO05D008410 7.1e-06 56.6 81 35.8
Migut.D02102 Erythranthe guttata HOM05D006354 ORTHO05D007773 9.3e-06 56.2 251 22.3
Medtr1g036780 Medicago truncatula HOM05D007291 ORTHO05D009038 9.3e-06 56.2 84 42.9
Sed0018920 Sechium edule HOM05D007212 ORTHO05D009094 9.3e-06 56.2 239 25.5


User provided reference genes

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