Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G054300 Glycine max HOM05D005338 ORTHO05D006550 1.4e-114 416.4 218 100.0
Glyma.15G160500 Glycine max HOM05D005338 ORTHO05D006550 6.3e-112 407.5 218 97.7
VMungo1215G3044 Vigna mungo HOM05D005338 ORTHO05D006550 1.6e-110 402.9 218 96.3
Glyma.18G135700 Glycine max HOM05D005338 ORTHO05D006550 9.5e-108 393.7 218 95.4
Phvul.009G240644 Phaseolus vulgaris HOM05D005338 ORTHO05D006550 4.0e-106 388.3 218 93.1
VMungo1309G1758 Vigna mungo HOM05D005338 ORTHO05D006550 4.0e-106 388.3 218 92.2
Lalb_Chr15g0083931 Lupinus albus HOM05D005338 ORTHO05D006550 2.4e-103 379.0 211 92.4
Medtr2g438770 Medicago truncatula HOM05D005338 ORTHO05D006550 2.4e-103 379.0 218 89.4
arahy.Tifrunner.gnm1.ann1.82M2ZV Arachis hypogaea HOM05D005338 ORTHO05D006550 5.4e-103 377.9 218 89.9
arahy.Tifrunner.gnm1.ann1.F09FAE Arachis hypogaea HOM05D005338 ORTHO05D006550 5.4e-103 377.9 218 89.9
arahy.Tifrunner.gnm1.ann1.N4382H Arachis hypogaea HOM05D005338 ORTHO05D006550 5.4e-103 377.9 218 89.9
arahy.Tifrunner.gnm1.ann1.VZ94AI Arachis hypogaea HOM05D005338 ORTHO05D006550 5.4e-103 377.9 218 89.9
Lj4g0021487 Lotus japonicus HOM05D005338 ORTHO05D006550 3.5e-102 375.2 218 89.4
Cfa018461 Carpinus fangiana HOM05D005338 ORTHO05D006550 3.0e-101 372.1 215 88.4
CiPaw.15G069200 Carya illinoinensis HOM05D005338 ORTHO05D006550 3.0e-101 372.1 218 87.2
Cfa002226 Carpinus fangiana HOM05D005338 ORTHO05D006550 3.9e-101 371.7 218 87.6
ClCG08G015430 Citrullus lanatus HOM05D005338 ORTHO05D006550 1.1e-100 370.2 218 85.3
CsaV3_2G028360 Cucumis sativus L. HOM05D005338 ORTHO05D006550 1.1e-100 370.2 218 85.3
Sed0010775 Sechium edule HOM05D005338 ORTHO05D006550 1.5e-100 369.8 218 84.9
QL02p007082 Quercus lobata HOM05D005338 ORTHO05D006550 1.9e-100 369.4 217 87.1
Duzib147G0908 Durio zibethinus HOM05D005338 ORTHO05D006550 3.3e-100 368.6 218 87.6
TWI74G1059 Tripterygium wilfordii HOM05D005338 ORTHO05D006550 7.3e-100 367.5 218 86.7
SGA_v2.0_scaffold4G02341 Striga asiatica HOM05D005338 ORTHO05D006550 1.6e-99 366.3 218 85.3
Cpa.g.sc337.5 Carica papaya HOM05D005338 ORTHO05D006550 2.1e-99 365.9 218 86.7
Migut.H00565 Erythranthe guttata HOM05D005338 ORTHO05D006550 2.1e-99 365.9 218 84.4
Gohir.A02G128500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 2.1e-99 365.9 218 86.2
Gorai.003G040400 Gossypium raimondii HOM05D005338 ORTHO05D006550 2.1e-99 365.9 218 86.2
Gorai.007G236400 Gossypium raimondii HOM05D005338 ORTHO05D006550 2.1e-99 365.9 211 88.6
Actinidia15288 Actinidia chinensis HOM05D005338 ORTHO05D006550 3.6e-99 365.2 218 85.3
MSTRG.2958 Avicennia marina HOM05D005338 ORTHO05D006550 4.7e-99 364.8 218 84.9
Gohir.D03G039200 Gossypium hirsutum HOM05D005338 ORTHO05D006550 4.7e-99 364.8 218 86.2
CSS0015965 Camellia sinensis var. sinensis HOM05D005338 ORTHO05D006550 6.2e-99 364.4 218 85.3
CANSAT25G1955 Cannabis sativa HOM05D005338 ORTHO05D006550 8.0e-99 364.0 218 85.3
Cc07_g04760 Coffea canephora HOM05D005338 ORTHO05D006550 1.0e-98 363.6 218 86.2
GSVIVG01009622001 Vitis vinifera HOM05D005338 ORTHO05D006550 1.0e-98 363.6 216 85.6
Gohir.A11G203500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 1.4e-98 363.2 218 85.3
Nitab4.5_0000154g0040 Nicotiana tabacum HOM05D005338 ORTHO05D006550 1.8e-98 362.8 217 85.3
Nitab4.5_0003384g0030 Nicotiana tabacum HOM05D005338 ORTHO05D006550 1.8e-98 362.8 218 85.3
Hma1.2p1_0471F.1_g159310 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 4.0e-98 361.7 218 84.4
Psat1g148520 Pisum sativum HOM05D005338 ORTHO05D006550 6.8e-98 360.9 223 83.9
MBI01_g22964_MAGBIO Magnolia biondii HOM05D005338 ORTHO05D006550 8.9e-98 360.5 218 84.9
Oeu012884.1 Olea europaea HOM05D005338 ORTHO05D006550 1.2e-97 360.1 218 83.9
Ciclev10026443m.g Citrus clementina HOM05D005338 ORTHO05D006550 1.5e-97 359.8 211 86.7
Nn8g40744 Nelumbo nucifera HOM05D005338 ORTHO05D006550 3.4e-97 358.6 218 83.5
Thecc.01G098200 Theobroma cacao HOM05D005338 ORTHO05D006550 3.4e-97 358.6 218 84.9
COL.COLO4_27273 Corchorus olitorius HOM05D005338 ORTHO05D006550 7.5e-97 357.5 218 84.9
Medtr5g044730 Medicago truncatula HOM05D005338 ORTHO05D006550 3.7e-96 355.1 207 88.4
Prupe.1G517500 Prunus persica HOM05D005338 ORTHO05D006550 4.9e-96 354.8 217 82.5
Eucgr.F01508 Eucalyptus grandis HOM05D005338 ORTHO05D006550 6.4e-96 354.4 218 83.0
CAN.G162.113 Capsicum annuum HOM05D005338 ORTHO05D006550 8.3e-96 354.0 215 83.7
CARHR113580 Cardamine hirsuta HOM05D005338 ORTHO05D006550 1.1e-95 353.6 218 82.6
Prupe.1G518900 Prunus persica HOM05D005338 ORTHO05D006550 1.4e-95 353.2 217 82.5
THA.LOC104824882 Tarenaya hassleriana HOM05D005338 ORTHO05D006550 1.4e-95 353.2 218 82.6
DCAR_003287 Daucus carota HOM05D005338 ORTHO05D006550 1.9e-95 352.8 218 82.1
PGR083G0298 Punica granatum HOM05D005338 ORTHO05D006550 2.4e-95 352.4 218 82.1
SalBow1G1006 Salvia bowleyana HOM05D000168 ORTHO05D006550 2.4e-95 352.4 218 82.1
TPR.G29215 Trifolium pratense HOM05D005338 ORTHO05D006550 4.1e-95 351.7 207 87.9
Manes.13G095300 Manihot esculenta HOM05D005338 ORTHO05D006550 5.4e-95 351.3 220 83.6
CANSAT56G3114 Cannabis sativa HOM05D005338 ORTHO05D006550 7.0e-95 350.9 218 81.7
Solyc06g008010.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 9.2e-95 350.5 215 83.3
PGSC0003DMG400014704 Solanum tuberosum HOM05D005338 ORTHO05D006550 9.2e-95 350.5 215 83.3
RcHm_v2.0_Chr5g0038311 Rosa chinensis HOM05D005338 ORTHO05D006550 2.0e-94 349.4 218 81.2
Sopen06g002850 Solanum pennellii HOM05D005338 ORTHO05D006550 2.0e-94 349.4 215 82.8
AT2G22370 Arabidopsis thaliana HOM05D005338 ORTHO05D006550 3.5e-94 348.6 218 80.7
EL10Ac3g06218 Beta vulgaris HOM05D005338 ORTHO05D006550 3.5e-94 348.6 218 80.3
FAN04G2403 Fragaria x ananassa HOM05D005338 ORTHO05D006550 6.0e-94 347.8 213 82.2
ECA247G2066 Erigeron canadensis HOM05D005338 ORTHO05D006550 1.0e-93 347.1 220 80.9
FvH4_5g37300 Fragaria vesca HOM05D005338 ORTHO05D006550 1.7e-93 346.3 217 80.2
FAN08G1597 Fragaria x ananassa HOM05D005338 ORTHO05D006550 5.0e-93 344.7 217 79.7
Thhalv10000318m.g Eutrema salsugineum HOM05D005338 ORTHO05D006550 6.6e-93 344.4 218 80.3
HanXRQChr04g0104391 Helianthus annuus HOM05D005338 ORTHO05D006550 6.6e-93 344.4 221 80.5
vmacro21598 Vaccinium macrocarpon HOM05D005338 ORTHO05D006550 2.5e-92 342.4 207 84.5
Hund12454 Selenicereus undatus HOM05D005338 ORTHO05D006550 3.3e-92 342.0 207 83.6
AL4G11870 Arabidopsis lyrata HOM05D005338 ORTHO05D006550 4.3e-92 341.7 218 79.4
Gohir.D11G220100 Gossypium hirsutum HOM05D005338 ORTHO05D006550 4.3e-92 341.7 209 83.7
Carub.0004s0155 Capsella rubella HOM05D005338 ORTHO05D006550 6.2e-91 337.8 218 78.4
Peaxi162Scf00479g00910 Petunia axillaris HOM05D005338 ORTHO05D006550 1.1e-90 337.0 206 84.0
Potri.007G095300 Populus trichocarpa HOM05D005338 ORTHO05D006550 1.1e-90 337.0 218 81.7
Haze_25403 Corylus avellana HOM05D005338 ORTHO05D006550 1.4e-90 336.7 294 65.6
Lsat_1_v5_gn_1_19481 Lactuca sativa HOM05D005338 ORTHO05D006550 1.8e-90 336.3 206 84.0
PSO017G6030 Papaver somniferum HOM05D005338 ORTHO05D006550 5.2e-90 334.7 218 77.5
Aqoxy6G01960 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 1.2e-89 333.6 218 77.5
FAN13G0739 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.2e-89 333.6 203 81.8
BcaC02g08666 Brassica carinata HOM05D005338 ORTHO05D006550 1.5e-89 333.2 219 79.0
unitig_744.g23988 Utricularia gibba HOM05D005338 ORTHO05D006550 2.0e-89 332.8 215 80.9
A04p16850 Brassica napus HOM05D005338 ORTHO05D006550 2.6e-89 332.4 219 79.0
BraA04t17318Z Brassica rapa HOM05D005338 ORTHO05D006550 2.6e-89 332.4 219 79.0
BcaC02g08711 Brassica carinata HOM05D005338 ORTHO05D006550 3.4e-89 332.0 219 79.0
C04p51430 Brassica napus HOM05D005338 ORTHO05D006550 3.4e-89 332.0 219 79.0
FAN18G4080 Fragaria x ananassa HOM05D005338 ORTHO05D006550 3.4e-89 332.0 202 81.7
PSO170G4003 Papaver somniferum HOM05D005338 ORTHO05D006550 1.3e-88 330.1 218 77.1
BolC4t26735H Brassica oleracea HOM05D005338 ORTHO05D006550 2.9e-88 328.9 219 78.5
Aqoxy1G02678 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 3.7e-88 328.6 218 76.1
MD15G1369800 Malus domestica HOM05D005338 ORTHO05D006550 3.7e-88 328.6 221 76.9
ATR0767G114 Amborella trichopoda HOM05D005338 ORTHO05D006550 2.1e-86 322.8 218 76.1
HPP92_021909 Vanilla planifolia HOM05D005338 ORTHO05D006550 1.3e-85 320.1 218 73.4
Sabra07G0078500 Salix brachista HOM05D005338 ORTHO05D006550 5.1e-85 318.2 211 77.7
Aa31LG7G14440 Aethionema arabicum HOM05D005338 ORTHO05D006550 8.6e-85 317.4 277 61.4
Os02g0193900 Oryza sativa ssp. japonica HOM05D005338 ORTHO05D006550 2.5e-84 315.8 203 75.9
Zm00001eb236490 Zea mays HOM05D005338 ORTHO05D006550 3.3e-84 315.5 202 76.7
Sopen03g010490 Solanum pennellii HOM05D005338 ORTHO05D006550 4.3e-84 315.1 215 75.3
Sopen03g021660 Solanum pennellii HOM05D005338 ORTHO05D006550 1.2e-83 313.5 215 74.9
Sp4g01410 Schrenkiella parvula HOM05D005338 ORTHO05D006550 3.6e-83 312.0 218 73.4
Sopen03g021630 Solanum pennellii HOM05D005338 ORTHO05D006550 8.1e-83 310.8 215 74.4
CDE07G0352 Ceratophyllum demersum HOM05D005338 ORTHO05D006550 5.2e-82 308.1 196 79.1
Dinv36026 Davidia involucrata HOM05D005338 ORTHO05D006550 7.6e-81 304.3 215 74.9
Ca_02026_v3 Cicer arietinum L. HOM05D005338 ORTHO05D006550 1.0e-77 293.9 164 90.2
MELO3C010912.2 Cucumis melo HOM05D005338 ORTHO05D006550 8.6e-77 290.8 174 83.9
CAN.G176.23 Capsicum annuum HOM05D005338 ORTHO05D006550 4.7e-75 285.0 185 78.9
Rhsim06G0038600 Rhododendron simsii HOM05D005338 ORTHO05D006550 4.4e-73 278.5 185 78.9
Lj4A782T79 Lonicera japonica HOM05D005338 ORTHO05D006550 2.2e-72 276.2 173 80.3
SHI19279 Sapria himalayana HOM05D005338 ORTHO05D006550 2.9e-72 275.8 201 71.1
Pp3c14_750 Physcomitrium patens HOM05D005338 ORTHO05D006550 7.8e-70 267.7 219 58.9
Mapoly0023s0045 Marchantia polymorpha HOM05D005338 ORTHO05D006550 3.0e-69 265.8 210 64.3
SMO236G0045 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 6.6e-69 264.6 210 63.3
SalBow1G1231 Salvia bowleyana HOM05D005338 ORTHO05D006550 3.8e-64 248.8 218 64.7
TAR628G0003 Trochodendron aralioides HOM05D005338 ORTHO05D006550 7.4e-60 234.6 145 82.8
AagrBONN_evm.TU.Sc2ySwM_362.1720 Anthoceros agrestis HOM05D005338 ORTHO05D006550 1.1e-58 230.7 210 56.7
AUR62040070 Chenopodium quinoa HOM05D005338 ORTHO05D006550 1.2e-57 227.3 139 80.6
Sc15g0006680 Simmondsia chinensis HOM05D005338 ORTHO05D006550 1.2e-57 227.3 145 82.8
Solyc03g046360.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 1.4e-55 220.3 212 58.5
RcHm_v2.0_Chr7g0238911 Rosa chinensis HOM05D005338 ORTHO05D006550 4.2e-55 218.8 177 67.8
Hma1.2p1_0023F.1_g015170 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 6.2e-51 204.9 151 74.2
RcHm_v2.0_Chr5g0034471 Rosa chinensis HOM05D005338 ORTHO05D006550 1.6e-46 190.3 125 76.8
Sopen00g011030 Solanum pennellii HOM05D005338 ORTHO05D006550 1.0e-45 187.6 215 51.6
RcHm_v2.0_Chr7g0238871 Rosa chinensis HOM05D005338 ORTHO05D006550 1.3e-43 180.6 110 77.3
SMO236G0041 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 3.7e-43 179.1 162 56.8
Sopen00g003620 Solanum pennellii HOM05D005338 ORTHO05D006550 4.1e-42 175.6 170 57.1
Sopen03g021680 Solanum pennellii HOM05D005338 ORTHO05D006550 4.8e-35 152.1 217 47.0
RcHm_v2.0_Chr7g0238881 Rosa chinensis HOM05D005338 ORTHO05D006550 2.4e-34 149.8 91 87.9
TPR.G5804 Trifolium pratense HOM05D005338 ORTHO05D006550 4.5e-33 145.6 84 91.7
Atru.chr1.3597 Acer truncatum HOM05D005338 ORTHO05D006550 1.3e-24 117.5 81 76.5
BcaC04g23293 Brassica carinata HOM05D005338 ORTHO05D006550 8.5e-16 88.2 56 73.2
BraA09t41155Z Brassica rapa HOM05D005338 ORTHO05D006550 8.5e-16 88.2 66 75.8
SEGI_27973 Sequoiadendron giganteum HOM05D005338 ORTHO05D006550 2.5e-15 86.7 53 73.6
Atru.chr12.488 Acer truncatum HOM05D005338 ORTHO05D006550 1.2e-14 84.3 45 88.9
TAR628G1182 Trochodendron aralioides HOM05D005338 ORTHO05D006550 1.2e-14 84.3 46 84.8
MD08G1183200 Malus domestica HOM05D005338 ORTHO05D006550 1.8e-10 70.5 88 47.7
C08p40830 Brassica napus HOM05D005338 ORTHO05D006550 1.0e-08 64.7 34 91.2
BolC8t51648H Brassica oleracea HOM05D005338 ORTHO05D006550 2.9e-08 63.2 34 91.2


User provided reference genes

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