Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 2191.0 1144 100.0
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 2038.1 1144 93.1
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 0.0e+00 1890.5 1141 86.6
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1881.3 1146 85.9
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1840.1 1144 84.4
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1832.0 1144 84.1
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 0.0e+00 1822.4 1144 83.7
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 0.0e+00 1803.1 1145 83.3
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1800.8 1144 82.4
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1800.8 1144 82.4
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 0.0e+00 1796.6 1147 81.9
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 0.0e+00 1588.5 1158 72.5
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 0.0e+00 1587.4 1145 73.7
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 0.0e+00 1579.7 1161 73.0
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 0.0e+00 1568.5 1157 73.5
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 0.0e+00 1567.4 1164 73.1
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 0.0e+00 1557.3 1177 71.2
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 0.0e+00 1547.3 1161 71.7
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 0.0e+00 1546.9 1180 71.4
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 0.0e+00 1543.9 1153 72.8
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1538.5 1153 72.2
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1537.7 1168 72.1
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1532.7 1181 70.4
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 0.0e+00 1530.4 1152 71.9
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1518.8 1183 69.9
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1516.9 1196 68.9
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 0.0e+00 1511.9 1158 70.7
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 0.0e+00 1508.8 1162 69.4
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 0.0e+00 1508.4 1161 70.9
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1508.0 1193 69.3
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 0.0e+00 1501.1 1163 71.1
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 0.0e+00 1500.0 1168 69.6
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 0.0e+00 1498.0 1155 70.2
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1494.9 1166 69.3
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 0.0e+00 1493.4 1166 70.5
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 0.0e+00 1488.0 1194 68.8
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 0.0e+00 1488.0 1166 69.8
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1487.6 1167 70.4
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 0.0e+00 1486.1 1160 69.7
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 0.0e+00 1483.0 1162 70.1
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 0.0e+00 1479.2 1165 69.5
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 0.0e+00 1477.6 1159 69.2
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 0.0e+00 1462.2 1162 68.5
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1460.7 1165 67.6
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 0.0e+00 1454.5 1165 68.7
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 0.0e+00 1448.0 1158 68.3
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 0.0e+00 1443.3 1179 68.1
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 0.0e+00 1442.6 1186 67.1
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 0.0e+00 1440.2 1158 68.0
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 0.0e+00 1439.1 1175 68.2
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1429.5 1167 67.7
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 0.0e+00 1422.1 1154 67.5
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1421.8 1164 67.4
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1419.4 1164 66.7
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1415.6 1164 67.3
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 0.0e+00 1415.2 1155 67.8
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 0.0e+00 1414.8 1159 67.1
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 0.0e+00 1406.7 1143 68.2
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 0.0e+00 1400.6 1153 67.1
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 0.0e+00 1398.6 1153 67.0
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 0.0e+00 1398.6 1218 65.1
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 0.0e+00 1395.6 1154 66.5
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 0.0e+00 1389.8 1153 66.2
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 0.0e+00 1388.2 1153 66.5
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 0.0e+00 1387.1 1163 65.8
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 0.0e+00 1384.4 1161 66.1
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 0.0e+00 1379.4 1181 65.5
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1375.9 1177 65.5
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 0.0e+00 1375.9 1162 65.5
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 0.0e+00 1374.0 1154 66.4
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1372.8 1177 65.4
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 0.0e+00 1371.3 1174 65.8
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 0.0e+00 1370.9 1179 65.2
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 0.0e+00 1369.8 1179 65.5
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1364.4 1125 66.8
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1362.4 1181 64.8
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1362.1 1177 64.7
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1361.7 1176 64.6
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 0.0e+00 1358.6 1178 65.0
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1355.5 1164 64.9
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 0.0e+00 1353.2 1176 64.7
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1347.0 1172 64.2
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 0.0e+00 1343.9 1161 64.3
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 0.0e+00 1332.0 1148 65.2
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 0.0e+00 1306.2 1196 62.0
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 0.0e+00 1289.6 1227 60.2
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 0.0e+00 1229.9 884 73.0
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 0.0e+00 1228.0 939 70.5
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 0.0e+00 1138.6 1236 53.4
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1136.7 922 67.6
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1117.4 1045 60.9
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 0.0e+00 1098.2 1197 52.0
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 0.0e+00 1094.0 1234 52.0
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 9.4e-308 1060.4 735 73.9
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.3e-288 996.9 1157 50.9
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.7e-270 936.0 728 69.0
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 6.4e-256 888.3 1389 42.8
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 1.1e-242 844.3 589 76.1
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 4.0e-242 842.4 588 75.5
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 1.2e-225 787.7 615 69.6
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 3.4e-225 786.2 538 77.0
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 4.5e-225 785.8 538 77.0
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 6.1e-222 775.4 524 78.4
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 4.7e-198 696.0 631 62.1
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 9.2e-186 655.2 620 60.6
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 2.7e-177 627.1 1171 38.1
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 1.5e-175 621.3 570 61.8
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 3.3e-159 567.0 572 57.9
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 1.7e-155 554.7 558 58.6
HPP92_010927 Vanilla planifolia HOM05D004611 ORTHO05D005794 1.1e-138 498.8 389 67.9
Actinidia14243 Actinidia chinensis HOM05D004611 ORTHO05D005794 4.6e-137 493.4 463 62.2
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 1.8e-133 481.5 554 52.0
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.1e-125 455.7 332 72.9
Cpa.g.sc146.72 Carica papaya HOM05D004611 ORTHO05D005794 1.0e-123 449.1 329 71.1
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 2.5e-122 444.5 767 37.3
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 9.7e-111 406.0 377 60.5
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 4.1e-109 400.6 380 60.5
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 1.5e-103 382.1 240 84.2
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 2.6e-103 381.3 491 49.7
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 3.7e-102 377.5 559 46.5
SEGI_02813 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 2.8e-94 351.3 359 53.5
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 2.3e-88 331.6 1187 28.0
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 2.5e-82 311.6 253 59.7
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 4.5e-76 290.8 456 47.4
CDE02G2799 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 2.0e-71 275.4 256 60.9
Cpa.g.sc146.70 Carica papaya HOM05D004611 ORTHO05D005794 6.3e-70 270.4 247 61.5
TAR362G0625 Trochodendron aralioides HOM05D004611 ORTHO05D005794 2.7e-68 265.0 228 68.0
arahy.Tifrunner.gnm1.ann1.PAF7VJ Arachis hypogaea HOM05D004611 ORTHO05D005794 7.8e-68 263.5 149 91.3
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 7.3e-66 256.9 179 74.3
SEGI_18823 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 2.6e-63 248.4 147 83.0
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 9.2e-61 240.0 371 45.0
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 5.6e-58 230.7 379 42.7
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 1.8e-56 225.7 379 42.0
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 2.3e-56 225.3 379 42.5
TPR.G40539 Trifolium pratense HOM05D004611 ORTHO05D005794 9.2e-53 213.4 173 68.8
Actinidia07518 Actinidia chinensis HOM05D004611 ORTHO05D005794 7.8e-52 210.3 197 57.9
arahy.Tifrunner.gnm1.ann1.MSK2EL Arachis hypogaea HOM05D004611 ORTHO05D005794 7.8e-52 210.3 113 93.8
arahy.Tifrunner.gnm1.ann1.N4MQ0H Arachis hypogaea HOM05D004611 ORTHO05D005794 1.5e-50 206.1 113 92.9
arahy.Tifrunner.gnm1.ann1.631YT7 Arachis hypogaea HOM05D004611 ORTHO05D005794 1.9e-50 205.7 111 93.7
Actinidia07517 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.2e-49 203.0 106 95.3
arahy.Tifrunner.gnm1.ann1.G1FZ3Z Arachis hypogaea HOM05D004611 ORTHO05D005794 8.1e-49 200.3 113 90.3
arahy.Tifrunner.gnm1.ann1.80REVR Arachis hypogaea HOM05D004611 ORTHO05D005794 1.1e-48 199.9 113 90.3
arahy.Tifrunner.gnm1.ann1.KEPZ3C Arachis hypogaea HOM05D004611 ORTHO05D005794 1.4e-45 189.5 109 89.9
arahy.Tifrunner.gnm1.ann1.F9ANIH Arachis hypogaea HOM05D004611 ORTHO05D005794 5.6e-42 177.6 106 86.8
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 4.7e-41 174.5 588 29.3
arahy.Tifrunner.gnm1.ann1.LTB099 Arachis hypogaea HOM05D004611 ORTHO05D005794 1.5e-39 169.5 99 86.9
Atru.chr6.2576 Acer truncatum HOM05D004611 ORTHO05D005794 5.8e-39 167.5 97 84.5
Actinidia25067 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.1e-37 163.3 89 91.0
Cpa.g.sc146.71 Carica papaya HOM05D004611 ORTHO05D005794 3.0e-35 155.2 82 93.9
CANSAT35G0087 Cannabis sativa HOM05D004611 ORTHO05D005794 1.1e-34 153.3 166 57.2
SMO356G0656 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 2.6e-31 142.1 122 60.7
SMO356G0045 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 5.1e-27 127.9 176 42.6
TPR.G31403 Trifolium pratense HOM05D004611 ORTHO05D005794 3.6e-25 121.7 72 86.1
HanXRQChr06g0164931 Helianthus annuus HOM05D004611 ORTHO05D005794 5.3e-24 117.9 85 70.6
arahy.Tifrunner.gnm1.ann1.0CQZ6Z Arachis hypogaea HOM05D000862 ORTHO05D000003 7.6e-23 114.0 75 78.7
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 2.2e-22 112.5 75 77.3
HanXRQChr04g0096671 Helianthus annuus HOM05D004611 ORTHO05D005794 1.1e-21 110.2 91 64.8
COL.COLO4_13521 Corchorus olitorius HOM05D004611 ORTHO05D005794 5.1e-19 101.3 91 62.6


User provided reference genes

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