Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G030400 Glycine max HOM05D004135 ORTHO05D005558 1.6e-163 579.3 291 100.0
Glyma.15G136100 Glycine max HOM05D004135 ORTHO05D005558 3.7e-160 568.2 291 97.3
Phvul.006G122500 Phaseolus vulgaris HOM05D004135 ORTHO05D005558 1.2e-155 553.1 291 93.8
Lj6g0020585 Lotus japonicus HOM05D004135 ORTHO05D005558 2.7e-150 535.4 289 90.3
Ca_00931_v3 Cicer arietinum L. HOM05D004135 ORTHO05D005558 5.6e-148 527.7 289 90.0
Medtr2g032130 Medicago truncatula HOM05D004135 ORTHO05D005558 3.1e-146 521.9 289 89.3
VMungo0540G1545 Vigna mungo HOM05D004135 ORTHO05D005558 6.4e-144 514.2 291 89.0
arahy.Tifrunner.gnm1.ann1.CJHC7K Arachis hypogaea HOM05D004135 ORTHO05D005558 9.3e-143 510.4 293 86.7
Lalb_Chr20g0120301 Lupinus albus HOM05D004135 ORTHO05D005558 6.2e-139 497.7 289 83.4
CiPaw.09G148400 Carya illinoinensis HOM05D004135 ORTHO05D005558 1.6e-134 483.0 286 80.8
CsaV3_6G052670 Cucumis sativus L. HOM05D004135 ORTHO05D005558 1.1e-132 476.9 287 79.1
QL05p064858 Quercus lobata HOM05D004135 ORTHO05D005558 1.9e-132 476.1 286 80.4
MELO3C007042.2 Cucumis melo HOM05D004135 ORTHO05D005558 3.3e-132 475.3 287 78.7
ClCG01G025420 Citrullus lanatus HOM05D004135 ORTHO05D005558 7.4e-132 474.2 287 78.7
Carub.0001s2889 Capsella rubella HOM05D004135 ORTHO05D005558 8.1e-131 470.7 289 77.9
Psat1g164080 Pisum sativum HOM05D004135 ORTHO05D005558 8.1e-131 470.7 258 89.5
TPR.G8030 Trifolium pratense HOM05D004135 ORTHO05D005558 1.4e-130 469.9 256 91.0
Cfa000762 Carpinus fangiana HOM05D004135 ORTHO05D005558 1.8e-130 469.5 286 79.4
AL1G44690 Arabidopsis lyrata HOM05D004135 ORTHO05D005558 6.9e-130 467.6 289 77.2
Sed0006315 Sechium edule HOM05D004135 ORTHO05D005558 9.0e-130 467.2 288 78.1
AT1G30630 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 1.2e-129 466.8 289 76.8
Aa31LG6G11870 Aethionema arabicum HOM05D004135 ORTHO05D005558 1.5e-129 466.5 288 78.5
Cpa.g.sc285.5 Carica papaya HOM05D004135 ORTHO05D005558 1.5e-129 466.5 286 78.7
Sp1g26530 Schrenkiella parvula HOM05D004135 ORTHO05D005558 5.8e-129 464.5 289 76.1
Gohir.A05G111900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 9.9e-129 463.8 285 78.2
Potri.011G155800 Populus trichocarpa HOM05D004135 ORTHO05D005558 9.9e-129 463.8 284 78.9
Thhalv10008349m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 1.3e-128 463.4 286 76.6
Hma1.2p1_0300F.1_g117980 Hydrangea macrophylla HOM05D004135 ORTHO05D005558 1.7e-128 463.0 289 76.8
Ciclev10016127m.g Citrus clementina HOM05D004135 ORTHO05D005558 2.9e-128 462.2 286 77.6
Manes.06G053900 Manihot esculenta HOM05D004135 ORTHO05D005558 2.9e-128 462.2 289 77.9
Sed0027064 Sechium edule HOM05D004135 ORTHO05D005558 2.9e-128 462.2 287 75.6
CANSAT35G0477 Cannabis sativa HOM05D004135 ORTHO05D005558 4.9e-128 461.5 286 76.6
Nitab4.5_0012414g0010 Nicotiana tabacum HOM05D004135 ORTHO05D005558 8.4e-128 460.7 286 78.3
Gorai.005G119100 Gossypium raimondii HOM05D004135 ORTHO05D005558 1.9e-127 459.5 286 78.0
BcaC05g27087 Brassica carinata HOM05D004135 ORTHO05D005558 3.2e-127 458.8 288 75.7
C05p29690 Brassica napus HOM05D004135 ORTHO05D005558 3.2e-127 458.8 288 75.7
BolC5t31698H Brassica oleracea HOM05D004135 ORTHO05D005558 3.2e-127 458.8 288 75.7
Manes.14G126900 Manihot esculenta HOM05D004135 ORTHO05D005558 3.2e-127 458.8 287 77.7
TAR629G2923 Trochodendron aralioides HOM05D004135 ORTHO05D005558 3.2e-127 458.8 289 75.4
Eucgr.D01026 Eucalyptus grandis HOM05D004135 ORTHO05D005558 4.2e-127 458.4 288 77.4
Gohir.D02G104900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 5.5e-127 458.0 286 77.6
Lj2A337T32 Lonicera japonica HOM05D004135 ORTHO05D005558 5.5e-127 458.0 288 76.4
Nitab4.5_0001219g0030 Nicotiana tabacum HOM05D004135 ORTHO05D005558 5.5e-127 458.0 286 77.6
Peaxi162Scf00195g00518 Petunia axillaris HOM05D004135 ORTHO05D005558 5.5e-127 458.0 287 77.4
A09p35780 Brassica napus HOM05D004135 ORTHO05D005558 7.1e-127 457.6 288 75.3
BraA09t39101Z Brassica rapa HOM05D004135 ORTHO05D005558 7.1e-127 457.6 288 75.3
THA.LOC104814339 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 7.1e-127 457.6 286 76.9
CARHR030110 Cardamine hirsuta HOM05D004135 ORTHO05D005558 9.3e-127 457.2 288 76.0
Gohir.A02G088700 Gossypium hirsutum HOM05D004135 ORTHO05D005558 1.2e-126 456.8 286 77.6
CAN.G675.30 Capsicum annuum HOM05D004135 ORTHO05D005558 1.6e-126 456.4 284 78.5
PSO541G2415 Papaver somniferum HOM05D004135 ORTHO05D005558 1.6e-126 456.4 287 76.0
THA.LOC104798582 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 1.6e-126 456.4 286 76.6
Lsat_1_v5_gn_1_86700 Lactuca sativa HOM05D004135 ORTHO05D005558 2.1e-126 456.1 286 75.9
Duzib235G1539 Durio zibethinus HOM05D004135 ORTHO05D005558 4.6e-126 454.9 286 76.2
Oeu060331.1 Olea europaea HOM05D004135 ORTHO05D005558 4.6e-126 454.9 284 76.8
BcaB07g32703 Brassica carinata HOM05D004135 ORTHO05D005558 6.0e-126 454.5 288 74.7
BcaC01g05751 Brassica carinata HOM05D004135 ORTHO05D005558 6.0e-126 454.5 288 77.4
C03p22580 Brassica napus HOM05D004135 ORTHO05D005558 6.0e-126 454.5 288 77.4
Solyc02g069585.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 7.9e-126 454.1 284 77.8
PSO675G0864 Papaver somniferum HOM05D004135 ORTHO05D005558 1.3e-125 453.4 287 76.0
Aa31LG10G6460 Aethionema arabicum HOM05D004135 ORTHO05D005558 1.8e-125 453.0 286 76.6
Lj1A1156T44 Lonicera japonica HOM05D004135 ORTHO05D005558 1.8e-125 453.0 299 73.9
TAR627G0684 Trochodendron aralioides HOM05D004135 ORTHO05D005558 1.8e-125 453.0 287 75.3
BolC3t14655H Brassica oleracea HOM05D004135 ORTHO05D005558 2.3e-125 452.6 288 76.7
BcaB06g28829 Brassica carinata HOM05D004135 ORTHO05D005558 3.0e-125 452.2 286 76.9
BraA03t11189Z Brassica rapa HOM05D004135 ORTHO05D005558 3.0e-125 452.2 286 77.3
Duzib160G0522 Durio zibethinus HOM05D004135 ORTHO05D005558 3.0e-125 452.2 286 76.9
GSVIVG01021747001 Vitis vinifera HOM05D004135 ORTHO05D005558 3.0e-125 452.2 289 75.8
Sopen02g018720 Solanum pennellii HOM05D004135 ORTHO05D005558 3.9e-125 451.8 284 77.5
MSTRG.16319 Avicennia marina HOM05D004135 ORTHO05D005558 8.7e-125 450.7 286 76.6
A03p19330 Brassica napus HOM05D004135 ORTHO05D005558 8.7e-125 450.7 285 77.5
Thecc.06G007700 Theobroma cacao HOM05D004135 ORTHO05D005558 8.7e-125 450.7 286 76.2
Gohir.D05G112400 Gossypium hirsutum HOM05D004135 ORTHO05D005558 3.3e-124 448.7 285 76.1
AUR62027344 Chenopodium quinoa HOM05D004135 ORTHO05D005558 4.3e-124 448.4 287 74.6
AT2G34840 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 5.6e-124 448.0 285 75.1
MSTRG.7569 Avicennia marina HOM05D004135 ORTHO05D005558 5.6e-124 448.0 284 75.7
Gorai.009G116600 Gossypium raimondii HOM05D004135 ORTHO05D005558 5.6e-124 448.0 285 76.1
PGSC0003DMG400021137 Solanum tuberosum HOM05D004135 ORTHO05D005558 7.4e-124 447.6 284 77.1
Prupe.4G101800 Prunus persica HOM05D004135 ORTHO05D005558 9.6e-124 447.2 286 76.2
PGR083G2348 Punica granatum HOM05D004135 ORTHO05D005558 9.6e-124 447.2 287 76.3
HanXRQChr11g0340901 Helianthus annuus HOM05D004135 ORTHO05D005558 2.1e-123 446.0 284 74.3
Sc24g0002580 Simmondsia chinensis HOM05D004135 ORTHO05D005558 2.1e-123 446.0 287 74.2
BraA04t18166Z Brassica rapa HOM05D004135 ORTHO05D005558 2.8e-123 445.7 286 75.9
Thhalv10017028m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 6.2e-123 444.5 288 75.7
HanXRQChr04g0119201 Helianthus annuus HOM05D004135 ORTHO05D005558 8.2e-123 444.1 284 75.4
Sopen02g009560 Solanum pennellii HOM05D004135 ORTHO05D005558 8.2e-123 444.1 284 77.5
C04p64030 Brassica napus HOM05D004135 ORTHO05D005558 1.1e-122 443.7 286 75.5
DCAR_003828 Daucus carota HOM05D004135 ORTHO05D005558 1.1e-122 443.7 286 73.1
SalBow8G1631 Salvia bowleyana HOM05D004135 ORTHO05D005558 1.1e-122 443.7 284 76.1
SalBow8G2729 Salvia bowleyana HOM05D004135 ORTHO05D005558 1.1e-122 443.7 284 76.1
Ah.11g045310 Amaranthus hybridus HOM05D004135 ORTHO05D005558 1.4e-122 443.4 287 74.2
A04p26610 Brassica napus HOM05D004135 ORTHO05D005558 1.4e-122 443.4 286 75.5
Migut.M01941 Erythranthe guttata HOM05D004135 ORTHO05D005558 1.8e-122 443.0 284 75.0
PGSC0003DMG400031401 Solanum tuberosum HOM05D004135 ORTHO05D005558 1.8e-122 443.0 284 77.1
Carub.0004s1652 Capsella rubella HOM05D004135 ORTHO05D005558 2.4e-122 442.6 286 74.8
Nn7g38349 Nelumbo nucifera HOM05D004135 ORTHO05D005558 2.4e-122 442.6 287 73.9
ATR0763G246 Amborella trichopoda HOM05D004135 ORTHO05D005558 3.1e-122 442.2 287 73.5
AUR62042515 Chenopodium quinoa HOM05D004135 ORTHO05D005558 4.0e-122 441.8 287 73.2
Aqoxy6G00202 Aquilegia oxysepala HOM05D004135 ORTHO05D005558 5.3e-122 441.4 287 73.5
Solyc02g030243.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 5.3e-122 441.4 284 77.1
BcaC02g07752 Brassica carinata HOM05D004135 ORTHO05D005558 9.0e-122 440.7 286 75.2
BolC4t27879H Brassica oleracea HOM05D004135 ORTHO05D005558 1.2e-121 440.3 286 75.2
EL10Ac8g19524 Beta vulgaris HOM05D004135 ORTHO05D005558 2.0e-121 439.5 287 73.5
CDE02G1412 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 3.4e-121 438.7 287 73.5
DCAR_007807 Daucus carota HOM05D004135 ORTHO05D005558 1.0e-120 437.2 292 72.3
Sp4g17120 Schrenkiella parvula HOM05D004135 ORTHO05D005558 1.0e-120 437.2 286 73.4
Sabra11G0144000 Salix brachista HOM05D004135 ORTHO05D005558 5.5e-119 431.4 299 71.6
HPP92_013200 Vanilla planifolia HOM05D004135 ORTHO05D005558 7.1e-119 431.0 287 72.8
CSS0034299 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D005558 7.9e-118 427.6 300 70.7
vmacro03457 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 7.9e-118 427.6 305 69.8
SGA_v2.0_scaffold298G47640 Striga asiatica HOM05D004135 ORTHO05D005558 1.3e-117 426.8 319 67.7
Nn4g26687 Nelumbo nucifera HOM05D004135 ORTHO05D005558 1.8e-117 426.4 287 70.4
Lsat_1_v5_gn_7_31180 Lactuca sativa HOM05D004135 ORTHO05D005558 3.9e-117 425.2 284 73.2
TWI15G0841 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 3.9e-117 425.2 290 72.8
TWI81G0788 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 3.9e-117 425.2 291 71.8
RcHm_v2.0_Chr5g0018341 Rosa chinensis HOM05D004135 ORTHO05D005558 5.1e-117 424.9 287 73.2
Os04g0612600 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 8.7e-117 424.1 287 71.8
unitig_748.g7354 Utricularia gibba HOM05D004135 ORTHO05D005558 1.6e-115 419.9 284 72.2
MD05G1263700 Malus domestica HOM05D004135 ORTHO05D005558 2.8e-115 419.1 286 72.0
Zm00001eb430730 Zea mays HOM05D004135 ORTHO05D005558 2.8e-115 419.1 287 71.1
Atru.chr6.3256 Acer truncatum HOM05D004135 ORTHO05D005558 4.8e-115 418.3 289 71.6
TWI38G0133 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 1.1e-114 417.2 290 71.4
Actinidia31378 Actinidia chinensis HOM05D004135 ORTHO05D005558 3.1e-114 415.6 259 78.8
FvH4_3g11400 Fragaria vesca HOM05D004135 ORTHO05D005558 3.4e-113 412.1 286 71.0
MBI18_g26296_MAGBIO Magnolia biondii HOM05D004135 ORTHO05D005558 4.5e-113 411.8 304 66.8
arahy.Tifrunner.gnm1.ann1.NB4WMM Arachis hypogaea HOM05D004135 ORTHO05D005558 7.7e-113 411.0 232 87.1
MD10G1241400 Malus domestica HOM05D004135 ORTHO05D005558 7.7e-113 411.0 283 71.0
FAN25G0882 Fragaria x ananassa HOM05D004135 ORTHO05D005558 3.8e-112 408.7 288 70.8
FAN21G1456 Fragaria x ananassa HOM05D004135 ORTHO05D005558 5.0e-112 408.3 288 70.5
FAN16G1287 Fragaria x ananassa HOM05D004135 ORTHO05D005558 8.5e-112 407.5 288 70.5
ECA236G2122 Erigeron canadensis HOM05D000091 ORTHO05D001510 1.2e-110 403.7 271 72.3
vmacro10993 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 3.0e-109 399.1 447 49.9
Actinidia32352 Actinidia chinensis HOM05D004135 ORTHO05D005558 1.3e-107 393.7 291 68.7
Oeu052702.4 Olea europaea HOM05D004135 ORTHO05D005558 8.2e-107 391.0 297 67.0
Haze_08569 Corylus avellana HOM05D004135 ORTHO05D005558 4.1e-106 388.7 304 66.1
Pp3c6_18240 Physcomitrium patens HOM05D004135 ORTHO05D005558 5.3e-106 388.3 287 64.8
Pp3c27_2170 Physcomitrium patens HOM05D004135 ORTHO05D005558 1.0e-104 384.0 287 63.4
Dinv04216 Davidia involucrata HOM05D004135 ORTHO05D005558 1.7e-104 383.3 232 79.7
Pp3c16_16890 Physcomitrium patens HOM05D004135 ORTHO05D005558 1.7e-104 383.3 289 63.7
Mapoly0002s0056 Marchantia polymorpha HOM05D004135 ORTHO05D005558 8.8e-101 370.9 285 62.5
Cc09_g07090 Coffea canephora HOM05D004135 ORTHO05D005558 1.3e-99 367.1 229 76.4
Os04g0644700 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 1.1e-98 364.0 293 62.8
Zm00001eb432010 Zea mays HOM05D004135 ORTHO05D005558 1.1e-98 364.0 292 61.0
AagrBONN_evm.TU.Sc2ySwM_117.3836 Anthoceros agrestis HOM05D004135 ORTHO05D005558 4.8e-91 338.6 286 58.4
Rhsim02G0165800 Rhododendron simsii HOM05D004135 ORTHO05D005558 5.0e-88 328.6 297 58.6
SMO358G0532 Selaginella moellendorffii HOM05D004135 ORTHO05D005558 2.7e-81 306.2 282 55.0
Actinidia25200 Actinidia chinensis HOM05D004135 ORTHO05D005558 4.5e-81 305.4 202 73.3
COL.COLO4_26892 Corchorus olitorius HOM05D004135 ORTHO05D005558 3.1e-74 282.7 267 57.3
Cre13.g592450 Chlamydomonas reinhardtii HOM05D004135 ORTHO05D005558 3.8e-72 275.8 286 49.3
PRCOL_00001868 Prasinoderma coloniale HOM05D004135 ORTHO05D005558 5.0e-72 275.4 282 50.0
CBR_g34668 Chara braunii HOM05D004135 ORTHO05D005558 4.0e-69 265.8 285 48.4
MCO11G236 Micromonas commoda HOM05D004135 ORTHO05D005558 2.0e-68 263.5 281 47.3
CDE06G2577 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 2.6e-60 236.5 164 68.3
Zm00001eb274480 Zea mays HOM05D004135 ORTHO05D005558 9.5e-55 218.0 151 66.2
Haze_05958 Corylus avellana HOM05D006556 ORTHO05D008146 1.2e-54 217.6 151 72.8
Thecc.06G007200 Theobroma cacao HOM05D004135 ORTHO05D005558 1.1e-50 204.5 111 86.5
COL.COLO4_29004 Corchorus olitorius HOM05D004135 ORTHO05D005558 2.1e-49 200.3 129 76.7
Zm00001eb135420 Zea mays HOM05D004135 ORTHO05D443401 1.2e-20 104.8 83 61.4
SGA_v2.0_scaffold147G36336 Striga asiatica HOM05D004135 ORTHO05D000001 2.0e-20 104.0 152 38.2
SGA_v2.0_scaffold147G36337 Striga asiatica HOM05D004135 ORTHO05D401852 2.0e-20 104.0 146 38.4
Zm00001eb180170 Zea mays HOM05D004135 ORTHO05D444922 5.8e-20 102.4 77 64.9
RcHm_v2.0_Chr6g0289631 Rosa chinensis HOM05D004135 ORTHO05D008146 2.9e-19 100.1 61 78.7
AUR62011277 Chenopodium quinoa HOM05D004135 ORTHO05D138132 2.4e-18 97.1 52 84.6
RcHm_v2.0_Chr6g0289621 Rosa chinensis HOM05D004135 ORTHO05D028393 3.5e-17 93.2 67 67.2
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 6.0e-17 92.4 79 60.8
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 2.3e-16 90.5 79 60.8
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 2.5e-15 87.0 79 59.5
CSS0024113 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D028393 3.3e-15 86.7 56 69.6
RcHm_v2.0_Chr0c29g0501101 Rosa chinensis HOM05D004135 ORTHO05D028393 1.3e-14 84.7 58 65.5
RcHm_v2.0_Chr1g0337861 Rosa chinensis HOM05D004135 ORTHO05D028393 1.3e-14 84.7 58 65.5
Zm00001eb388920 Zea mays HOM05D000787 ORTHO05D001019 1.5e-12 77.8 80 55.0
VMungo0540G1336 Vigna mungo HOM05D000328 ORTHO05D000191 1.3e-08 64.7 41 75.6
Zm00001eb297670 Zea mays HOM05D004958 ORTHO05D005983 4.3e-07 59.7 54 59.3
AUR62044460 Chenopodium quinoa HOM05D004135 ORTHO05D137931 2.1e-06 57.4 37 73.0


User provided reference genes

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