Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G259766 Glycine max HOM05D004739 ORTHO05D005784 8.6e-72 273.5 132 100.0
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 1.4e-45 186.4 107 82.2
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 3.2e-42 175.3 106 77.4
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 9.3e-42 173.7 107 78.5
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 1.5e-39 166.4 107 73.8
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 6.3e-38 161.0 107 74.8
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 5.3e-37 157.9 107 71.0
TPR.G2930 Trifolium pratense HOM05D004739 ORTHO05D005784 2.0e-36 156.0 121 65.3
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 3.9e-32 141.7 107 69.2
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 3.9e-32 141.7 129 58.1
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 3.7e-30 135.2 107 57.0
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 3.7e-30 135.2 107 56.1
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 8.2e-30 134.0 107 57.0
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 1.1e-29 133.7 107 56.1
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.1e-29 133.7 107 56.1
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.1e-29 133.7 107 56.1
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 1.3e-27 126.7 109 55.0
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 2.2e-27 125.9 107 59.8
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 2.2e-27 125.9 107 59.8
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 1.4e-26 123.2 109 56.0
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 7.2e-26 120.9 106 53.8
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 9.4e-26 120.6 109 53.2
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 4.7e-25 118.2 109 56.9
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.8e-24 116.3 109 55.0
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 3.9e-24 115.2 109 53.2
MD09G1250200 Malus domestica HOM05D004739 ORTHO05D005784 5.1e-24 114.8 123 48.0
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 1.1e-23 113.6 98 57.1
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 2.6e-23 112.5 109 53.2
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 9.7e-23 110.5 109 53.2
TAR365G0620 Trochodendron aralioides HOM05D004739 ORTHO05D005784 9.7e-23 110.5 109 53.2
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 1.3e-22 110.2 107 53.3
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 2.2e-22 109.4 109 51.4
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 2.8e-22 109.0 107 49.5
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 3.7e-22 108.6 109 52.3
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 3.7e-22 108.6 106 52.8
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 4.8e-22 108.2 108 50.9
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 1.1e-21 107.1 109 49.5
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 1.8e-21 106.3 110 46.4
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 1.8e-21 106.3 109 50.5
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 2.4e-21 105.9 110 46.4
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 2.4e-21 105.9 110 46.4
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 3.1e-21 105.5 109 47.7
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 3.1e-21 105.5 123 48.0
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 1.2e-20 103.6 111 46.8
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 3.4e-20 102.1 109 47.7
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 3.4e-20 102.1 110 43.6
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 4.5e-20 101.7 111 47.7
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 4.5e-20 101.7 108 49.1
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 5.9e-20 101.3 107 43.0
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 7.7e-20 100.9 110 45.5
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 1.0e-19 100.5 125 43.2
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 1.7e-19 99.8 110 43.6
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 1.7e-19 99.8 109 48.6
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 3.8e-19 98.6 109 47.7
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 5.0e-19 98.2 109 45.9
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 5.0e-19 98.2 110 49.1
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 6.5e-19 97.8 109 51.4
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 6.5e-19 97.8 108 40.7
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 6.5e-19 97.8 110 45.5
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 8.5e-19 97.4 107 43.9
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 1.9e-18 96.3 109 43.1
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 2.5e-18 95.9 111 45.0
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 4.2e-18 95.1 94 46.8
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 5.5e-18 94.7 110 42.7
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 5.5e-18 94.7 112 42.0
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 9.4e-18 94.0 110 41.8
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 1.2e-17 93.6 111 45.0
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 1.2e-17 93.6 112 44.6
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 1.2e-17 93.6 109 45.9
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 1.2e-17 93.6 109 45.9
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 6.1e-17 91.3 112 42.9
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 1.0e-16 90.5 109 46.8
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 1.0e-16 90.5 109 43.1
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 3.0e-16 89.0 95 45.3
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 3.9e-16 88.6 109 41.3
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 5.2e-16 88.2 109 42.2
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 5.2e-16 88.2 108 43.5
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 8.8e-16 87.4 109 43.1
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 1.1e-15 87.0 109 42.2
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 1.5e-15 86.7 110 43.6
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 2.6e-15 85.9 109 45.9
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 3.3e-15 85.5 125 36.0
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 4.4e-15 85.1 109 44.0
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 2.2e-14 82.8 111 42.3
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 2.2e-14 82.8 111 43.2
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 2.2e-14 82.8 104 41.3
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 2.2e-14 82.8 109 38.5
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 2.8e-14 82.4 110 42.7
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 4.8e-14 81.6 100 40.0
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 6.3e-14 81.3 109 43.1
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 6.3e-14 81.3 99 39.4
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 1.1e-13 80.5 101 41.6
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 2.4e-13 79.3 109 40.4
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 2.4e-13 79.3 109 37.6
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 2.0e-12 76.3 122 37.7
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 7.7e-12 74.3 73 53.4
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 7.7e-12 74.3 75 46.7
SEGI_19061 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 8.5e-11 70.9 112 36.6
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 9.4e-10 67.4 108 31.5
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 1.3e-06 57.0 99 34.3


User provided reference genes

Program Settings