Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G199200 Glycine max HOM05D005962 ORTHO05D007325 1.6e-138 496.1 250 100.0
VMungo0331G0822 Vigna mungo HOM05D005962 ORTHO05D007325 4.4e-133 478.0 253 96.4
Phvul.010G143300 Phaseolus vulgaris HOM05D005962 ORTHO05D007325 1.4e-131 473.0 250 95.6
Lj3g0005277 Lotus japonicus HOM05D005962 ORTHO05D007325 2.8e-119 432.2 245 89.4
Psat4g195960 Pisum sativum HOM05D005962 ORTHO05D007325 3.6e-119 431.8 247 85.8
Medtr8g015230 Medicago truncatula HOM05D005962 ORTHO05D007325 3.7e-116 421.8 250 84.4
Lalb_Chr01g0013231 Lupinus albus HOM05D005962 ORTHO05D007325 1.3e-113 413.3 247 82.6
TAR623G1297 Trochodendron aralioides HOM05D005962 ORTHO05D007325 1.3e-113 413.3 249 81.5
Atru.chr12.732 Acer truncatum HOM05D005962 ORTHO05D007325 6.6e-113 411.0 251 82.9
Ca_23283_v3 Cicer arietinum L. HOM05D005962 ORTHO05D007325 5.6e-112 407.9 251 82.9
arahy.Tifrunner.gnm1.ann1.FEFU12 Arachis hypogaea HOM05D005962 ORTHO05D007325 7.3e-112 407.5 245 82.9
CiPaw.02G144100 Carya illinoinensis HOM05D005962 ORTHO05D007325 1.2e-111 406.8 250 81.6
Haze_15888 Corylus avellana HOM05D005962 ORTHO05D007325 2.1e-111 406.0 247 81.4
Thecc.06G103400 Theobroma cacao HOM05D005962 ORTHO05D007325 6.2e-111 404.4 252 80.6
arahy.Tifrunner.gnm1.ann1.M52QXX Arachis hypogaea HOM05D005962 ORTHO05D007325 1.4e-110 403.3 229 86.9
COL.COLO4_30547 Corchorus olitorius HOM05D005962 ORTHO05D007325 1.4e-110 403.3 236 84.3
Gohir.D01G215700 Gossypium hirsutum HOM05D005962 ORTHO05D007325 3.1e-110 402.1 233 83.7
Prupe.3G054900 Prunus persica HOM05D005962 ORTHO05D007325 3.1e-110 402.1 235 85.1
Gorai.002G261900 Gossypium raimondii HOM05D005962 ORTHO05D007325 6.8e-110 401.0 253 79.1
Nn4g25123 Nelumbo nucifera HOM05D005962 ORTHO05D007325 6.8e-110 401.0 246 79.3
MBI01_g35895_MAGBIO Magnolia biondii HOM05D005962 ORTHO05D007325 1.2e-109 400.2 247 79.8
Duzib192G0276 Durio zibethinus HOM05D005962 ORTHO05D007325 1.5e-109 399.8 254 79.1
CsaV3_3G023410 Cucumis sativus L. HOM05D005962 ORTHO05D007325 7.5e-109 397.5 247 81.8
Manes.11G030300 Manihot esculenta HOM05D005962 ORTHO05D007325 1.7e-108 396.4 250 78.4
Actinidia32123 Actinidia chinensis HOM05D005962 ORTHO05D007325 6.4e-108 394.4 249 77.9
ClCG07G013490 Citrullus lanatus HOM05D005962 ORTHO05D007325 1.1e-107 393.7 248 81.5
Gohir.A10G063800 Gossypium hirsutum HOM05D005962 ORTHO05D007325 1.1e-107 393.7 258 77.5
Rhsim08G0229500 Rhododendron simsii HOM05D005962 ORTHO05D007325 1.1e-107 393.7 246 79.3
Gorai.011G069400 Gossypium raimondii HOM05D005962 ORTHO05D007325 1.9e-107 392.9 233 83.3
Sabra17G0126400 Salix brachista HOM05D005962 ORTHO05D007325 1.9e-107 392.9 234 81.6
Ciclev10026335m.g Citrus clementina HOM05D005962 ORTHO05D007325 2.4e-107 392.5 252 79.0
GSVIVG01016927001 Vitis vinifera HOM05D005962 ORTHO05D007325 3.2e-107 392.1 227 84.1
Gohir.D10G065400 Gossypium hirsutum HOM05D005962 ORTHO05D007325 9.2e-107 390.6 258 77.5
CANSAT21G1984 Cannabis sativa HOM05D005962 ORTHO05D007325 1.2e-106 390.2 253 77.9
Sed0025844 Sechium edule HOM05D005962 ORTHO05D007325 1.6e-106 389.8 254 79.9
Manes.04G136400 Manihot esculenta HOM05D005962 ORTHO05D007325 3.5e-106 388.7 250 79.2
Aqoxy2G04031 Aquilegia oxysepala HOM05D005962 ORTHO05D007325 6.0e-106 387.9 245 80.0
MELO3C013015.2 Cucumis melo HOM05D005962 ORTHO05D007325 1.0e-105 387.1 275 74.2
QL08p056642 Quercus lobata HOM05D005962 ORTHO05D007325 1.0e-105 387.1 252 78.6
DCAR_007600 Daucus carota HOM05D005962 ORTHO05D007325 1.7e-105 386.3 248 77.4
vmacro18833 Vaccinium macrocarpon HOM05D005962 ORTHO05D007325 1.7e-105 386.3 247 76.5
CSS0027495 Camellia sinensis var. sinensis HOM05D005962 ORTHO05D007325 5.0e-105 384.8 225 81.8
Eucgr.J02602 Eucalyptus grandis HOM05D005962 ORTHO05D007325 5.0e-105 384.8 257 76.3
TWI12G1051 Tripterygium wilfordii HOM05D005962 ORTHO05D007325 1.5e-104 383.3 247 76.1
Oeu024256.1 Olea europaea HOM05D005962 ORTHO05D007325 1.2e-103 380.2 263 74.5
Cc00_g23930 Coffea canephora HOM05D005962 ORTHO05D007325 2.1e-103 379.4 235 79.1
Rhsim08G0229700 Rhododendron simsii HOM05D005962 ORTHO05D007325 2.8e-103 379.0 259 74.1
Hma1.2p1_0764F.1_g214960 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 1.8e-102 376.3 248 77.0
PGSC0003DMG400026839 Solanum tuberosum HOM05D005962 ORTHO05D007325 2.3e-102 375.9 254 75.6
Sc19g0007830 Simmondsia chinensis HOM05D005962 ORTHO05D007325 4.0e-102 375.2 257 74.7
Peaxi162Scf00038g01151 Petunia axillaris HOM05D005962 ORTHO05D007325 1.5e-101 373.2 233 79.4
Sopen12g023060 Solanum pennellii HOM05D005962 ORTHO05D007325 2.0e-101 372.9 249 76.3
Hma1.2p1_2308F.1_g319480 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 2.6e-101 372.5 248 76.2
ECA248G1573 Erigeron canadensis HOM05D005962 ORTHO05D007325 3.4e-101 372.1 227 79.7
Solyc12g044640.2 Solanum lycopersicum HOM05D005962 ORTHO05D007325 3.4e-101 372.1 244 75.8
MSTRG.11013 Avicennia marina HOM05D005962 ORTHO05D007325 1.7e-100 369.8 234 77.4
HPP92_007682 Vanilla planifolia HOM05D005962 ORTHO05D007325 2.2e-100 369.4 247 73.7
Lsat_1_v5_gn_5_181040 Lactuca sativa HOM05D005962 ORTHO05D007325 8.3e-100 367.5 226 79.6
CAN.G1143.30 Capsicum annuum HOM05D005962 ORTHO05D007325 5.4e-99 364.8 232 75.9
PGSC0003DMG401002516 Solanum tuberosum HOM05D005962 ORTHO05D007325 5.4e-99 364.8 233 76.8
EL10Ac3g07358 Beta vulgaris HOM05D005962 ORTHO05D007325 7.1e-99 364.4 247 74.5
Nitab4.5_0002423g0030 Nicotiana tabacum HOM05D005962 ORTHO05D007325 7.1e-99 364.4 253 73.5
PSO210G0258 Papaver somniferum HOM05D005962 ORTHO05D007325 7.1e-99 364.4 244 73.8
RcHm_v2.0_Chr2g0141751 Rosa chinensis HOM05D005962 ORTHO05D007325 9.2e-99 364.0 252 73.4
SalBow6G5073 Salvia bowleyana HOM05D005962 ORTHO05D007325 3.5e-98 362.1 228 78.1
Nitab4.5_0001172g0180 Nicotiana tabacum HOM05D005962 ORTHO05D007325 6.0e-98 361.3 256 74.2
AUR62020986 Chenopodium quinoa HOM05D005962 ORTHO05D007325 1.0e-97 360.5 247 74.5
FvH4_6g32730 Fragaria vesca HOM05D005962 ORTHO05D007325 1.7e-97 359.8 252 73.0
PSO210G7608 Papaver somniferum HOM05D005962 ORTHO05D007325 1.7e-97 359.8 244 73.0
Migut.I00971 Erythranthe guttata HOM05D005962 ORTHO05D007325 1.5e-96 356.7 229 77.7
PGR102G2175 Punica granatum HOM05D005962 ORTHO05D007325 1.5e-96 356.7 235 74.0
FAN05G1114 Fragaria x ananassa HOM05D005962 ORTHO05D007325 2.5e-96 355.9 252 72.2
Sopen03g040020 Solanum pennellii HOM05D005962 ORTHO05D007325 2.5e-96 355.9 250 72.4
Dinv37956 Davidia involucrata HOM05D005962 ORTHO05D007325 5.6e-96 354.8 214 82.2
FAN02G1749 Fragaria x ananassa HOM05D005962 ORTHO05D007325 3.6e-95 352.1 252 71.0
unitig_32.g10986 Utricularia gibba HOM05D005962 ORTHO05D007325 1.4e-94 350.1 245 73.9
AUR62018448 Chenopodium quinoa HOM05D005962 ORTHO05D007325 2.0e-93 346.3 247 72.5
FAN09G1055 Fragaria x ananassa HOM05D005962 ORTHO05D007325 3.4e-93 345.5 250 69.6
Os06g0217500 Oryza sativa ssp. japonica HOM05D005962 ORTHO05D007325 3.4e-93 345.5 233 72.1
Aa31LG8G8050 Aethionema arabicum HOM05D005962 ORTHO05D007325 2.4e-91 339.3 233 72.5
HanXRQChr15g0489361 Helianthus annuus HOM05D005962 ORTHO05D007325 4.6e-90 335.1 245 71.0
Zm00001eb372970 Zea mays HOM05D005962 ORTHO05D007325 8.6e-89 330.9 231 71.4
Gohir.A01G226000 Gossypium hirsutum HOM05D005962 ORTHO05D007325 4.3e-88 328.6 199 81.4
THA.LOC104805924 Tarenaya hassleriana HOM05D005962 ORTHO05D007325 8.1e-87 324.3 233 70.4
Sp3g19410 Schrenkiella parvula HOM05D005962 ORTHO05D007325 1.4e-86 323.6 233 69.5
Carub.0003s2138 Capsella rubella HOM05D005962 ORTHO05D007325 5.2e-86 321.6 233 69.5
Thhalv10021373m.g Eutrema salsugineum HOM05D005962 ORTHO05D007325 5.2e-86 321.6 233 70.8
Solyc03g121210.4 Solanum lycopersicum HOM05D005962 ORTHO05D007325 5.2e-86 321.6 228 70.2
SGA_v2.0_scaffold45G16998 Striga asiatica HOM05D005962 ORTHO05D007325 1.5e-85 320.1 182 82.4
AL3G35400 Arabidopsis lyrata HOM05D005962 ORTHO05D007325 2.0e-85 319.7 233 68.7
SHI11207 Sapria himalayana HOM05D005962 ORTHO05D007325 2.0e-85 319.7 236 67.8
BcaB06g26231 Brassica carinata HOM05D005962 ORTHO05D007325 7.6e-85 317.8 233 69.1
BcaC05g28175 Brassica carinata HOM05D005962 ORTHO05D007325 2.2e-84 316.2 234 70.5
AT3G21350 Arabidopsis thaliana HOM05D005962 ORTHO05D007325 2.9e-84 315.8 233 69.5
CARHR097270 Cardamine hirsuta HOM05D005962 ORTHO05D007325 3.8e-84 315.5 232 69.0
A05p27250 Brassica napus HOM05D005962 ORTHO05D007325 4.9e-84 315.1 233 69.1
C05p42110 Brassica napus HOM05D005962 ORTHO05D007325 8.4e-84 314.3 233 68.7
TPR.G39766 Trifolium pratense HOM05D005962 ORTHO05D007325 2.7e-82 309.3 185 83.2
BraA05t21615Z Brassica rapa HOM05D005962 ORTHO05D007325 3.5e-82 308.9 243 66.7
BolC5t32941H Brassica oleracea HOM05D005962 ORTHO05D007325 3.1e-78 295.8 270 59.3
Cfa019373 Carpinus fangiana HOM05D005962 ORTHO05D007325 3.3e-72 275.8 171 81.9
Cpa.g.sc131.1 Carica papaya HOM05D005962 ORTHO05D007325 7.4e-72 274.6 151 84.8
ATR0705G221 Amborella trichopoda HOM05D005962 ORTHO05D007325 4.8e-71 271.9 163 79.8
Ah.04g150140 Amaranthus hybridus HOM05D005962 ORTHO05D007325 1.1e-67 260.8 156 80.1
Lj5A50T68 Lonicera japonica HOM05D005962 ORTHO05D007325 7.1e-67 258.1 171 77.2
Migut.I00969 Erythranthe guttata HOM05D005962 ORTHO05D007325 9.3e-67 257.7 139 84.9
Migut.O00801 Erythranthe guttata HOM05D005962 ORTHO05D007325 9.3e-67 257.7 139 84.9
MD14G1079700 Malus domestica HOM05D005962 ORTHO05D007325 6.7e-65 251.5 175 77.1
AagrBONN_evm.TU.Sc2ySwM_362.1658 Anthoceros agrestis HOM05D005962 ORTHO05D007325 2.1e-63 246.5 194 62.9
Pp3c11_22580 Physcomitrium patens HOM05D005962 ORTHO05D007325 2.8e-63 246.1 245 55.5
Mapoly0012s0176 Marchantia polymorpha HOM05D005962 ORTHO05D007325 1.0e-60 237.7 250 54.8
SMO143G0120 Selaginella moellendorffii HOM05D005962 ORTHO05D007325 2.5e-59 233.0 189 63.0
CBR_g22489 Chara braunii HOM05D005962 ORTHO05D007325 8.2e-47 191.4 244 46.3
Medtr0361s0030 Medicago truncatula HOM05D005962 ORTHO05D007325 1.2e-42 177.6 103 84.5
Lj3g0016976 Lotus japonicus HOM05D005962 ORTHO05D007325 2.0e-40 170.2 189 56.1
QL05p018100 Quercus lobata HOM05D005962 ORTHO05D007325 8.8e-33 144.8 93 77.4
Lj5C50T14 Lonicera japonica HOM05D005962 ORTHO05D007325 1.8e-30 137.1 75 81.3
SEGI_18792 Sequoiadendron giganteum HOM05D005962 ORTHO05D007325 5.0e-28 129.0 80 75.0
Dinv30416 Davidia involucrata HOM05D005962 ORTHO05D007325 7.2e-27 125.2 224 39.3
Cfa019374 Carpinus fangiana HOM05D005962 ORTHO05D007325 9.4e-27 124.8 67 85.1
TAR624G0741 Trochodendron aralioides HOM05D005962 ORTHO05D007325 2.1e-26 123.6 157 51.0
Lsat_1_v5_gn_2_99820 Lactuca sativa HOM05D005962 ORTHO05D007325 4.0e-25 119.4 72 76.4
RcHm_v2.0_Chr5g0064381 Rosa chinensis HOM05D005962 ORTHO05D007325 1.2e-21 107.8 85 60.0
Ah.04g150130 Amaranthus hybridus HOM05D000535 ORTHO05D000427 7.7e-21 105.1 89 61.8
TAR623G1541 Trochodendron aralioides HOM05D005962 ORTHO05D007325 2.9e-20 103.2 58 84.5
Nitab4.5_0008212g0010 Nicotiana tabacum HOM05D005962 ORTHO05D007325 1.2e-18 97.8 197 38.1
PRCOL_00006676 Prasinoderma coloniale HOM05D001184 ORTHO05D008450 1.8e-17 94.0 130 38.5
Zm00001eb084330 Zea mays HOM05D005962 ORTHO05D007325 3.0e-17 93.2 59 74.6
Zm00001eb192830 Zea mays HOM05D005962 ORTHO05D007325 1.5e-16 90.9 63 68.3
Pp3c7_2870 Physcomitrium patens HOM05D005962 ORTHO05D007325 4.1e-14 82.8 261 31.8
TAR636G3265 Trochodendron aralioides HOM05D005962 ORTHO05D007325 5.9e-13 79.0 49 73.5
Cpa.g.c26718.1 Carica papaya HOM05D005962 ORTHO05D007325 1.5e-11 74.3 54 68.5
BraA09t39590Z Brassica rapa HOM05D002393 ORTHO05D002845 1.0e-09 68.2 64 54.7
Dinv30417 Davidia involucrata HOM05D000106 ORTHO05D000160 8.8e-09 65.1 60 58.3
Cre11.g467659 Chlamydomonas reinhardtii HOM05D005962 ORTHO05D007325 7.0e-06 55.5 154 30.5


User provided reference genes

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