Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G177800 Glycine max HOM05D005914 ORTHO05D007361 2.3e-125 452.2 223 100.0
Glyma.15G054900 Glycine max HOM05D005914 ORTHO05D007361 2.4e-90 335.9 196 85.7
Phvul.006G205000 Phaseolus vulgaris HOM05D005914 ORTHO05D007361 2.2e-88 329.3 225 75.1
TPR.G25250 Trifolium pratense HOM05D005914 ORTHO05D008190 2.3e-77 292.7 195 74.9
Medtr2g009140 Medicago truncatula HOM05D005914 ORTHO05D007361 1.5e-76 290.0 195 73.3
VMungo0540G0716 Vigna mungo HOM05D005914 ORTHO05D007361 3.4e-76 288.9 203 72.9
Psat1g215880 Pisum sativum HOM05D005914 ORTHO05D007361 7.0e-74 281.2 195 72.8
Lj6g0019162 Lotus japonicus HOM05D005914 ORTHO05D007361 1.6e-73 280.0 198 71.7
Ca_00145_v3 Cicer arietinum L. HOM05D005914 ORTHO05D007361 8.6e-72 274.2 198 70.2
Lalb_Chr20g0122961 Lupinus albus HOM05D005914 ORTHO05D007361 2.2e-67 259.6 195 69.7
arahy.Tifrunner.gnm1.ann1.J9LH1L Arachis hypogaea HOM05D005914 ORTHO05D007361 1.4e-61 240.4 204 62.3
arahy.Tifrunner.gnm1.ann1.71PCZ9 Arachis hypogaea HOM05D005914 ORTHO05D007361 5.2e-61 238.4 195 64.1
arahy.Tifrunner.gnm1.ann1.T9E77A Arachis hypogaea HOM05D005914 ORTHO05D007361 5.8e-60 235.0 204 61.3
QL02p022744 Quercus lobata HOM05D005914 ORTHO05D007361 2.0e-57 226.5 200 61.5
Haze_21570 Corylus avellana HOM05D005914 ORTHO05D007361 3.9e-56 222.2 200 60.5
CiPaw.07G220900 Carya illinoinensis HOM05D005914 ORTHO05D007361 3.3e-55 219.2 200 56.5
Cfa013180 Carpinus fangiana HOM05D005914 ORTHO05D007361 4.3e-55 218.8 200 59.5
Dinv11618 Davidia involucrata HOM05D005914 ORTHO05D007361 1.6e-54 216.9 200 57.0
Prupe.1G473200 Prunus persica HOM05D005914 ORTHO05D007361 4.9e-51 205.3 197 55.8
CANSAT80G2406 Cannabis sativa HOM05D005914 ORTHO05D007361 2.4e-50 203.0 194 53.1
CANSAT80G0109 Cannabis sativa HOM05D005914 ORTHO05D007361 5.4e-50 201.8 194 53.1
TWI63G0300 Tripterygium wilfordii HOM05D005914 ORTHO05D007361 9.2e-50 201.1 202 53.0
RcHm_v2.0_Chr6g0298621 Rosa chinensis HOM05D005914 ORTHO05D007361 1.6e-49 200.3 201 54.7
MD15G1120500 Malus domestica HOM05D005914 ORTHO05D007361 2.1e-49 199.9 209 52.6
CSS0046358 Camellia sinensis var. sinensis HOM05D005914 ORTHO05D007361 1.3e-48 197.2 196 51.5
Gorai.004G274400 Gossypium raimondii HOM05D005914 ORTHO05D007361 1.3e-48 197.2 199 50.3
Thecc.09G149100 Theobroma cacao HOM05D005914 ORTHO05D007361 1.7e-48 196.8 199 51.8
GSVIVG01035808001 Vitis vinifera HOM05D005914 ORTHO05D007361 1.7e-48 196.8 196 53.6
FvH4_2g29650 Fragaria vesca HOM05D005914 ORTHO05D007361 2.3e-48 196.4 198 53.0
FAN24G3193 Fragaria x ananassa HOM05D005914 ORTHO05D007361 2.3e-48 196.4 198 53.0
Actinidia22373 Actinidia chinensis HOM05D005914 ORTHO05D007361 6.6e-48 194.9 196 50.5
Gohir.A08G236800 Gossypium hirsutum HOM05D005914 ORTHO05D007361 8.6e-48 194.5 199 49.7
TAR625G1283 Trochodendron aralioides HOM05D005914 ORTHO05D007361 1.5e-47 193.7 201 52.2
Eucgr.C01789 Eucalyptus grandis HOM05D005914 ORTHO05D007361 2.5e-47 193.0 200 51.0
BolC7t44763H Brassica oleracea HOM05D005914 ORTHO05D007361 9.5e-47 191.0 197 51.8
C07p42340 Brassica napus HOM05D005914 ORTHO05D007361 1.2e-46 190.7 197 51.8
Sabra06G0196100 Salix brachista HOM05D005914 ORTHO05D007361 1.6e-46 190.3 196 51.5
Atru.chr7.2376 Acer truncatum HOM05D005914 ORTHO05D007361 2.1e-46 189.9 201 50.7
Potri.006G250800 Populus trichocarpa HOM05D005914 ORTHO05D007361 2.1e-46 189.9 196 51.5
Ciclev10008576m.g Citrus clementina HOM05D005914 ORTHO05D007361 3.6e-46 189.1 198 50.5
CAN.G98.27 Capsicum annuum HOM05D005914 ORTHO05D007361 8.1e-46 188.0 196 52.0
Duzib150G0329 Durio zibethinus HOM05D005914 ORTHO05D007361 1.4e-45 187.2 200 50.5
Peaxi162Scf00341g00624 Petunia axillaris HOM05D005914 ORTHO05D007361 1.4e-45 187.2 196 51.5
Nn2g11936 Nelumbo nucifera HOM05D005914 ORTHO05D007361 1.8e-45 186.8 206 52.4
Carub.0006s2334 Capsella rubella HOM05D005914 ORTHO05D007361 2.3e-45 186.4 196 50.0
Sp2g22050 Schrenkiella parvula HOM05D005914 ORTHO05D007361 5.2e-45 185.3 196 49.0
Thhalv10004397m.g Eutrema salsugineum HOM05D005914 ORTHO05D007361 6.8e-45 184.9 196 50.5
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 6.8e-45 184.9 205 48.3
Rhsim02G0194500 Rhododendron simsii HOM05D005914 ORTHO05D007361 1.2e-44 184.1 196 49.0
Nitab4.5_0000151g0200 Nicotiana tabacum HOM05D005914 ORTHO05D007361 1.5e-44 183.7 196 50.5
Gohir.D08G257400 Gossypium hirsutum HOM05D005914 ORTHO05D007361 2.0e-44 183.3 182 51.1
Nitab4.5_0001669g0040 Nicotiana tabacum HOM05D005914 ORTHO05D007361 2.0e-44 183.3 196 50.0
THA.LOC104799221 Tarenaya hassleriana HOM05D005914 ORTHO05D007361 2.6e-44 183.0 197 50.8
ECA233G4604 Erigeron canadensis HOM05D005914 ORTHO05D007361 5.8e-44 181.8 195 49.7
AL6G37280 Arabidopsis lyrata HOM05D005914 ORTHO05D007361 9.9e-44 181.0 196 49.0
Solyc08g067070.3 Solanum lycopersicum HOM05D005914 ORTHO05D007361 9.9e-44 181.0 196 51.0
AT5G25480 Arabidopsis thaliana HOM05D005914 ORTHO05D007361 1.7e-43 180.3 196 49.0
A06p36180 Brassica napus HOM05D005914 ORTHO05D007361 1.7e-43 180.3 195 50.8
BraA06t26540Z Brassica rapa HOM05D005914 ORTHO05D007361 1.7e-43 180.3 195 50.8
HanXRQChr13g0402741 Helianthus annuus HOM05D005914 ORTHO05D007361 1.7e-43 180.3 196 48.5
Manes.16G119400 Manihot esculenta HOM05D005914 ORTHO05D007361 6.4e-43 178.3 196 49.0
PGR142G2371 Punica granatum HOM05D005914 ORTHO05D007361 6.4e-43 178.3 200 48.5
Sopen08g021020 Solanum pennellii HOM05D005914 ORTHO05D007361 6.4e-43 178.3 196 50.5
ClCG08G013130 Citrullus lanatus HOM05D005914 ORTHO05D007361 8.4e-43 177.9 197 48.7
Aa31LG11G4850 Aethionema arabicum HOM05D005914 ORTHO05D007361 1.9e-42 176.8 195 48.2
MELO3C011235.2 Cucumis melo HOM05D005914 ORTHO05D007361 3.2e-42 176.0 196 49.0
DCAR_006234 Daucus carota HOM05D005914 ORTHO05D007361 3.2e-42 176.0 195 48.2
Cc11_g01820 Coffea canephora HOM05D005914 ORTHO05D007361 4.1e-42 175.6 195 48.2
Migut.E01476 Erythranthe guttata HOM05D005914 ORTHO05D007361 4.1e-42 175.6 196 46.9
AUR62024878 Chenopodium quinoa HOM05D005914 ORTHO05D007361 9.2e-42 174.5 200 50.0
Aqoxy7G02060 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 3.5e-41 172.6 199 49.7
SGA_v2.0_scaffold4G02186 Striga asiatica HOM05D005914 ORTHO05D007361 3.5e-41 172.6 196 49.0
MSTRG.13986 Avicennia marina HOM05D005914 ORTHO05D007361 6.0e-41 171.8 182 50.0
Lsat_1_v5_gn_6_22181 Lactuca sativa HOM05D005914 ORTHO05D007361 1.3e-40 170.6 197 48.2
EL10Ac2g02591 Beta vulgaris HOM05D005914 ORTHO05D007361 8.6e-40 167.9 201 48.3
AUR62030669 Chenopodium quinoa HOM05D005914 ORTHO05D007361 4.3e-39 165.6 199 46.2
CDE04G0852 Ceratophyllum demersum HOM05D005914 ORTHO05D007361 5.6e-39 165.2 209 45.0
Sed0010731 Sechium edule HOM05D005914 ORTHO05D007361 5.6e-39 165.2 195 47.7
CsaV3_2G031850 Cucumis sativus L. HOM05D005914 ORTHO05D007361 2.1e-38 163.3 179 49.7
MD15G1439700 Malus domestica HOM05D005914 ORTHO05D007361 2.4e-37 159.8 229 45.0
PSO170G3156 Papaver somniferum HOM05D005914 ORTHO05D007361 1.5e-36 157.1 200 45.0
ATR0815G040 Amborella trichopoda HOM05D005914 ORTHO05D007361 2.6e-36 156.4 225 39.6
unitig_747.g21653 Utricularia gibba HOM05D005914 ORTHO05D007361 1.7e-35 153.7 196 42.9
HPP92_012620 Vanilla planifolia HOM05D005914 ORTHO05D007361 3.8e-35 152.5 197 41.6
PSO455G0041 Papaver somniferum HOM05D005914 ORTHO05D007361 4.9e-35 152.1 180 47.8
MD08G1143700 Malus domestica HOM05D005914 ORTHO05D007361 2.7e-33 146.4 161 47.8
SalBow2G3472 Salvia bowleyana HOM05D005914 ORTHO05D007361 3.5e-33 146.0 207 44.0
Zm00001eb358040 Zea mays HOM05D005914 ORTHO05D007361 3.3e-31 139.4 183 42.1
Pp3c12_2410 Physcomitrium patens HOM05D005914 ORTHO05D007361 3.2e-26 122.9 253 34.0
Oeu033137.1 Olea europaea HOM05D005914 ORTHO05D007361 7.1e-26 121.7 101 60.4
Os01g0612000 Oryza sativa ssp. japonica HOM05D005914 ORTHO05D007361 3.5e-25 119.4 86 68.6
COL.COLO4_23983 Corchorus olitorius HOM05D005914 ORTHO05D007361 4.6e-25 119.0 199 38.7
Nitab4.5_0003498g0080 Nicotiana tabacum HOM05D005914 ORTHO05D007361 2.3e-24 116.7 74 75.7
Mapoly0011s0185 Marchantia polymorpha HOM05D005914 ORTHO05D007361 1.9e-23 113.6 90 58.9
MBI04_g46184_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.6e-22 110.5 201 38.8
RcHm_v2.0_Chr1g0355831 Rosa chinensis HOM05D005914 ORTHO05D007361 4.8e-22 109.0 196 37.2
CBR_g3173 Chara braunii HOM05D005914 ORTHO05D007361 6.2e-22 108.6 89 60.7
SMO146G0196 Selaginella moellendorffii HOM05D005914 ORTHO05D007361 1.8e-21 107.1 195 36.4
CARHR187910 Cardamine hirsuta HOM05D005914 ORTHO05D007361 4.0e-21 105.9 68 69.1
SEGI_35502 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 4.0e-21 105.9 66 72.7
Sc09g0008580 Simmondsia chinensis HOM05D005914 ORTHO05D007361 2.2e-19 100.1 65 70.8
AagrBONN_evm.TU.Sc2ySwM_228.810 Anthoceros agrestis HOM05D005914 ORTHO05D007361 3.2e-18 96.3 139 41.7
Cpa.g.sc91.41 Carica papaya HOM05D005914 ORTHO05D007361 7.1e-18 95.1 64 67.2
Lj7C718G14 Lonicera japonica HOM05D005914 ORTHO05D007361 1.2e-17 94.4 184 34.8
FAN20G2480 Fragaria x ananassa HOM05D005914 ORTHO05D007361 2.3e-16 90.1 184 35.3
FAN27G2538 Fragaria x ananassa HOM05D005914 ORTHO05D007361 1.1e-13 81.3 183 35.0
MCO14G456 Micromonas commoda HOM05D005914 ORTHO05D007361 1.1e-13 81.3 65 56.9
Hma1.2p1_0000F.1_g000780 Hydrangea macrophylla HOM05D005914 ORTHO05D007361 6.9e-13 78.6 131 35.9
MCO11G560 Micromonas commoda HOM05D005914 ORTHO05D007361 6.9e-13 78.6 76 46.1
PRCOL_00003212 Prasinoderma coloniale HOM05D005914 ORTHO05D007361 2.0e-12 77.0 68 52.9
Ah.12g063960 Amaranthus hybridus HOM05D005914 ORTHO05D007361 3.4e-12 76.3 54 68.5
Ah.12g063950 Amaranthus hybridus HOM05D005914 ORTHO05D007361 2.5e-10 70.1 120 31.7
Cre12.g484600 Chlamydomonas reinhardtii HOM05D005914 ORTHO05D007361 2.1e-09 67.0 70 45.7
MD08G1143600 Malus domestica HOM05D005914 ORTHO05D007361 6.7e-08 62.0 66 48.5
Sc09g0008460 Simmondsia chinensis HOM05D005914 ORTHO05D007361 2.5e-07 60.1 56 50.0


User provided reference genes

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