Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 0.0e+00 1379.4 976 100.0
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 0.0e+00 1261.9 976 92.4
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 1.5e-293 1013.1 980 78.5
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 7.9e-279 964.1 976 79.3
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 4.0e-275 951.8 979 78.0
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 2.2e-265 919.5 1065 67.2
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 4.1e-251 872.1 991 72.6
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 1.8e-243 846.7 1062 65.7
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 1.8e-238 830.1 992 72.4
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 2.3e-222 776.5 971 58.2
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 5.7e-221 771.9 659 74.8
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 5.7e-221 771.9 1066 63.7
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 2.3e-217 760.0 678 73.3
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 1.6e-215 753.8 982 69.2
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 8.9e-214 748.0 687 70.5
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 2.7e-210 736.5 713 66.8
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 2.8e-207 726.5 608 73.5
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 6.8e-206 721.8 686 65.2
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 5.8e-205 718.8 675 70.5
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 9.8e-205 718.0 739 66.3
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 3.7e-204 716.1 731 67.0
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 3.2e-203 713.0 738 65.0
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 9.2e-203 711.4 630 70.2
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 1.2e-202 711.1 713 65.8
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 4.6e-202 709.1 580 76.4
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 3.3e-200 703.0 682 68.6
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 5.6e-200 702.2 683 67.8
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 3.4e-197 693.0 680 67.4
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 1.7e-196 690.6 708 63.3
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 2.2e-196 690.3 652 67.6
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 3.7e-196 689.5 707 64.4
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 3.2e-195 686.4 723 62.2
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 4.1e-195 686.0 632 69.8
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 9.2e-195 684.9 632 69.6
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 2.7e-194 683.3 672 67.7
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 1.0e-193 681.4 990 64.2
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 2.1e-191 673.7 578 72.8
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 1.4e-190 671.0 690 67.7
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 7.5e-189 665.2 683 63.3
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 1.3e-188 664.5 642 66.5
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 1.3e-188 664.5 665 64.8
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 2.2e-188 663.7 613 67.4
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 2.9e-188 663.3 688 62.8
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 3.7e-188 662.9 711 64.3
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 4.1e-187 659.4 668 63.2
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 5.4e-187 659.1 712 64.2
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 7.1e-187 658.7 712 64.2
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.2e-186 657.9 712 63.9
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.2e-186 657.9 700 66.0
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 1.2e-186 657.9 701 65.6
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 2.7e-186 656.8 682 66.6
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 1.7e-185 654.1 683 62.5
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 5.1e-185 652.5 601 68.7
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 2.5e-184 650.2 714 61.2
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 3.3e-184 649.8 614 72.0
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 5.6e-184 649.0 620 70.8
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 7.3e-184 648.7 665 65.6
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 7.3e-184 648.7 686 66.8
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 4.7e-183 646.0 682 63.9
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 4.0e-182 642.9 660 64.5
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 3.4e-181 639.8 698 65.0
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 3.4e-181 639.8 700 61.6
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 3.8e-180 636.3 750 59.2
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 3.8e-180 636.3 689 60.1
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 1.4e-179 634.4 624 68.3
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 3.5e-178 629.8 562 69.8
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 6.0e-178 629.0 622 69.8
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 6.6e-177 625.5 696 61.6
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 1.5e-176 624.4 660 65.0
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 2.6e-173 613.6 577 64.8
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 2.2e-172 610.5 684 64.0
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 2.9e-172 610.1 682 64.2
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 4.9e-172 609.4 602 68.1
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 3.2e-171 606.7 671 60.8
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 1.0e-169 601.7 655 64.4
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 1.0e-169 601.7 663 59.6
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 2.3e-169 600.5 645 64.5
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 6.6e-169 599.0 626 66.0
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 8.7e-169 598.6 513 69.2
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 1.1e-168 598.2 513 68.2
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 4.3e-168 596.3 669 63.4
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 2.1e-167 594.0 670 63.0
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 4.8e-167 592.8 734 57.5
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 6.2e-167 592.4 663 63.8
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 1.4e-166 591.3 701 60.6
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 2.4e-166 590.5 692 57.2
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 6.9e-166 589.0 648 63.7
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 6.9e-166 589.0 674 62.3
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 1.5e-165 587.8 706 60.3
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 2.6e-165 587.0 637 62.6
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 2.6e-165 587.0 637 62.6
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 7.6e-165 585.5 637 62.5
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 1.7e-164 584.3 671 60.4
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 4.9e-164 582.8 685 59.6
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 1.4e-163 581.3 604 61.8
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 4.2e-163 579.7 583 62.6
CAN.G1155.22 Capsicum annuum HOM05D005307 ORTHO05D006695 1.2e-162 578.2 593 66.1
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 3.1e-158 563.5 622 64.1
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 2.0e-157 560.8 499 69.9
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 3.8e-156 556.6 622 63.8
CiPaw.01G117700 Carya illinoinensis HOM05D005307 ORTHO05D006695 2.2e-148 530.8 473 75.1
Cpa.g.sc83.42 Carica papaya HOM05D005307 ORTHO05D006695 4.8e-135 486.5 497 71.4
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 5.0e-124 449.9 509 60.3
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 1.0e-121 442.2 515 58.8
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 2.6e-120 437.6 596 54.9
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 2.9e-108 397.5 289 75.8
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 1.5e-107 395.2 327 73.1
TAR625G1365 Trochodendron aralioides HOM05D005307 ORTHO05D006695 4.0e-89 334.0 208 77.4
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 2.8e-82 311.2 520 46.2
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 3.4e-80 304.3 553 43.8
Actinidia33177 Actinidia chinensis HOM05D005307 ORTHO05D006695 2.3e-76 291.6 364 64.3
Lj3A756G29 Lonicera japonica HOM05D005307 ORTHO05D006695 2.1e-74 285.0 467 54.2
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 3.4e-72 277.7 434 46.8
BolC1t03929H Brassica oleracea HOM05D005307 ORTHO05D006695 1.1e-70 272.7 296 59.5
arahy.Tifrunner.gnm1.ann1.K4I8TV Arachis hypogaea HOM05D005307 ORTHO05D006695 3.0e-68 264.6 206 75.7
SalBow8G1782 Salvia bowleyana HOM05D005307 ORTHO05D006695 4.7e-66 257.3 332 57.8
A01p31200 Brassica napus HOM05D005307 ORTHO05D006695 3.1e-65 254.6 276 63.0
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 3.1e-65 254.6 693 42.4
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 3.0e-60 238.0 719 40.9
Hund24403 Selenicereus undatus HOM05D005307 ORTHO05D006695 3.9e-60 237.7 185 66.5
SEGI_03012 Sequoiadendron giganteum HOM05D005307 ORTHO05D006695 9.6e-59 233.0 245 52.7
Cpa.g.sc83.41 Carica papaya HOM05D005307 ORTHO05D006695 3.6e-58 231.1 184 76.6
Lj3A756G30 Lonicera japonica HOM05D005307 ORTHO05D006695 3.7e-26 124.8 71 85.9
arahy.Tifrunner.gnm1.ann1.H01PAW Arachis hypogaea HOM05D005307 ORTHO05D006695 5.5e-22 110.9 58 91.4
BcaC03g15749 Brassica carinata HOM05D005307 ORTHO05D006695 4.6e-21 107.8 89 61.8
Actinidia33176 Actinidia chinensis HOM05D005307 ORTHO05D006695 1.8e-20 105.9 155 47.7
BolC2t09503H Brassica oleracea HOM05D005307 ORTHO05D006695 3.9e-20 104.8 63 76.2
Cre16.g672150 Chlamydomonas reinhardtii HOM05D005307 ORTHO05D006695 2.8e-18 98.6 176 38.1
Psat7g074680 Pisum sativum HOM05D005307 ORTHO05D006695 9.1e-17 93.6 262 35.9
BraA02t07152Z Brassica rapa HOM05D005307 ORTHO05D006695 3.4e-16 91.7 113 48.7
Lj3C756T3 Lonicera japonica HOM05D005307 ORTHO05D006695 1.1e-14 86.7 88 71.6
BolC2t09502H Brassica oleracea HOM05D005307 ORTHO05D006695 2.5e-14 85.5 106 49.1
BraA02t07151Z Brassica rapa HOM05D005307 ORTHO05D027550 3.2e-14 85.1 291 39.9
MCO02G402 Micromonas commoda HOM05D005307 ORTHO05D006695 4.2e-14 84.7 413 25.2
C02p34830 Brassica napus HOM05D005307 ORTHO05D006695 2.1e-13 82.4 113 46.9
arahy.Tifrunner.gnm1.ann1.V8QUIX Arachis hypogaea HOM05D000659 ORTHO05D006695 1.0e-12 80.1 82 76.8
arahy.Tifrunner.gnm1.ann1.6LH71N Arachis hypogaea HOM05D005307 ORTHO05D006695 1.4e-12 79.7 133 60.2
C02p34840 Brassica napus HOM05D005307 ORTHO05D027550 4.5e-08 64.7 266 36.5
Gohir.A01G041600 Gossypium hirsutum HOM05D001023 ORTHO05D000912 2.2e-07 62.4 104 36.5
Gorai.002G038400 Gossypium raimondii HOM05D001023 ORTHO05D000912 2.2e-07 62.4 104 36.5
Gohir.A04G047000 Gossypium hirsutum HOM05D001023 ORTHO05D000912 1.5e-06 59.7 104 33.7
Gohir.A11G291200 Gossypium hirsutum HOM05D001023 ORTHO05D000912 1.5e-06 59.7 104 34.6
Gohir.D11G301400 Gossypium hirsutum HOM05D001023 ORTHO05D000912 1.5e-06 59.7 104 34.6
Gorai.007G335300 Gossypium raimondii HOM05D001023 ORTHO05D000912 1.5e-06 59.7 104 34.6
Gorai.009G358300 Gossypium raimondii HOM05D001023 ORTHO05D000912 1.5e-06 59.7 104 33.7
Gohir.D05G333200 Gossypium hirsutum HOM05D001023 ORTHO05D000912 1.9e-06 59.3 116 31.0
arahy.Tifrunner.gnm1.ann1.6FDN0X Arachis hypogaea HOM05D001023 ORTHO05D000912 2.5e-06 58.9 93 36.6
arahy.Tifrunner.gnm1.ann1.8WSJ5E Arachis hypogaea HOM05D001023 ORTHO05D000912 2.5e-06 58.9 93 36.6
A01p24780 Brassica napus HOM05D001023 ORTHO05D000912 2.5e-06 58.9 92 35.9
Carub.0001s4292 Capsella rubella HOM05D001023 ORTHO05D000912 2.5e-06 58.9 97 36.1
ATR0730G215 Amborella trichopoda HOM05D001023 ORTHO05D000912 4.2e-06 58.2 107 34.6
Migut.M00654 Erythranthe guttata HOM05D001023 ORTHO05D000912 4.2e-06 58.2 105 35.2
Thhalv10021108m.g Eutrema salsugineum HOM05D001023 ORTHO05D000912 4.2e-06 58.2 105 34.3
Aa31LG10G1640 Aethionema arabicum HOM05D001023 ORTHO05D000912 5.5e-06 57.8 104 34.6
BcaC05g29071 Brassica carinata HOM05D001023 ORTHO05D000912 5.5e-06 57.8 105 34.3
A05p34920 Brassica napus HOM05D001023 ORTHO05D000912 5.5e-06 57.8 105 34.3
C05p52830 Brassica napus HOM05D001023 ORTHO05D000912 5.5e-06 57.8 105 34.3
BolC5t33960H Brassica oleracea HOM05D001023 ORTHO05D000912 5.5e-06 57.8 105 34.3
BraA05t22306Z Brassica rapa HOM05D001023 ORTHO05D000912 5.5e-06 57.8 105 34.3
THA.LOC104810411 Tarenaya hassleriana HOM05D001023 ORTHO05D000912 5.5e-06 57.8 97 33.0
CDE11G0185 Ceratophyllum demersum HOM05D001023 ORTHO05D000912 7.2e-06 57.4 92 38.0
ECA232G0760 Erigeron canadensis HOM05D001023 ORTHO05D000912 7.2e-06 57.4 92 39.1
HanXRQChr05g0139321 Helianthus annuus HOM05D001023 ORTHO05D000912 7.2e-06 57.4 92 38.0
Lsat_1_v5_gn_9_50120 Lactuca sativa HOM05D001023 ORTHO05D000912 7.2e-06 57.4 92 38.0
TWI81G0940 Tripterygium wilfordii HOM05D001023 ORTHO05D000912 7.2e-06 57.4 92 38.0
BcaB06g25380 Brassica carinata HOM05D001023 ORTHO05D000912 9.4e-06 57.0 105 33.3
BcaC01g03928 Brassica carinata HOM05D001023 ORTHO05D000912 9.4e-06 57.0 105 33.3
A03p38850 Brassica napus HOM05D001023 ORTHO05D000912 9.4e-06 57.0 105 33.3
C03p47040 Brassica napus HOM05D001023 ORTHO05D000912 9.4e-06 57.0 105 33.3
BolC3t16969H Brassica oleracea HOM05D001023 ORTHO05D000912 9.4e-06 57.0 105 33.3
BraA03t13033Z Brassica rapa HOM05D001023 ORTHO05D000912 9.4e-06 57.0 105 33.3
Carub.0003s1418 Capsella rubella HOM05D001023 ORTHO05D000912 9.4e-06 57.0 105 33.3
Potri.001G448800 Populus trichocarpa HOM05D001023 ORTHO05D000912 9.4e-06 57.0 92 38.0
Sabra16G0302900 Salix brachista HOM05D001023 ORTHO05D000912 9.4e-06 57.0 92 38.0
THA.LOC104822602 Tarenaya hassleriana HOM05D001023 ORTHO05D000912 9.4e-06 57.0 98 33.7
TWI38G1104 Tripterygium wilfordii HOM05D001023 ORTHO05D000912 9.4e-06 57.0 107 31.8


User provided reference genes

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