Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G033500 Glycine max HOM05D005801 ORTHO05D008555 0.0e+00 1082.0 558 100.0
Phvul.002G308600 Phaseolus vulgaris HOM05D005801 ORTHO05D008555 4.2e-269 931.0 559 86.8
VMungo0251G1949 Vigna mungo HOM05D005801 ORTHO05D008555 1.1e-261 906.4 559 84.3
Lj4g0016627 Lotus japonicus HOM05D005801 ORTHO05D008555 4.0e-219 765.0 604 70.4
Lalb_Chr05g0223241 Lupinus albus HOM05D005801 ORTHO05D008555 2.7e-215 752.3 579 71.8
Ca_17365_v3 Cicer arietinum L. HOM05D005801 ORTHO05D008555 1.3e-214 750.0 564 71.8
arahy.Tifrunner.gnm1.ann1.BF4XTR Arachis hypogaea HOM05D005801 ORTHO05D008555 1.5e-205 719.9 575 69.2
Psat7g016720 Pisum sativum HOM05D005801 ORTHO05D008555 2.0e-202 709.5 621 64.1
Medtr8g102480 Medicago truncatula HOM05D005801 ORTHO05D008555 4.9e-201 704.9 593 66.4
Duzib150G1339 Durio zibethinus HOM05D005801 ORTHO05D008555 3.7e-164 582.4 605 56.9
Thecc.09G100600 Theobroma cacao HOM05D005801 ORTHO05D008555 1.2e-162 577.4 595 57.3
Gohir.D07G009800 Gossypium hirsutum HOM05D005801 ORTHO05D008555 2.9e-161 572.8 585 57.9
CiPaw.04G157900 Carya illinoinensis HOM05D005801 ORTHO05D008555 4.2e-160 568.9 584 56.5
Gorai.001G010100 Gossypium raimondii HOM05D005801 ORTHO05D008555 2.1e-159 566.6 583 57.8
Gohir.A07G009500 Gossypium hirsutum HOM05D005801 ORTHO05D008555 1.8e-158 563.5 574 57.8
Potri.018G087800 Populus trichocarpa HOM05D005801 ORTHO05D008555 2.0e-157 560.1 611 55.2
Cfa003179 Carpinus fangiana HOM05D005801 ORTHO05D008555 4.1e-155 552.4 396 72.7
Prupe.7G219800 Prunus persica HOM05D005801 ORTHO05D008555 9.1e-155 551.2 611 54.3
QL02p041581 Quercus lobata HOM05D005801 ORTHO05D008555 1.3e-153 547.4 479 64.3
COL.COLO4_34743 Corchorus olitorius HOM05D005801 ORTHO05D008555 1.1e-152 544.3 453 66.0
Duzib132G0722 Durio zibethinus HOM05D005801 ORTHO05D008555 1.9e-152 543.5 473 64.5
RcHm_v2.0_Chr2g0091911 Rosa chinensis HOM05D005801 ORTHO05D008555 1.9e-152 543.5 595 54.1
Sabra18G0076100 Salix brachista HOM05D005801 ORTHO05D008555 5.5e-152 542.0 622 53.5
CANSAT21G1751 Cannabis sativa HOM05D005801 ORTHO05D008555 1.6e-151 540.4 579 55.6
FAN28G2516 Fragaria x ananassa HOM05D005801 ORTHO05D008555 2.7e-151 539.7 632 51.3
Manes.16G108700 Manihot esculenta HOM05D005801 ORTHO05D008555 6.7e-150 535.0 576 54.0
TWI63G0976 Tripterygium wilfordii HOM05D005801 ORTHO05D008555 1.1e-149 534.3 606 53.3
TAR636G1320 Trochodendron aralioides HOM05D005801 ORTHO05D008555 7.4e-149 531.6 559 54.7
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 1.7e-148 530.4 601 53.1
CSS0008146 Camellia sinensis var. sinensis HOM05D005801 ORTHO05D008555 2.2e-148 530.0 408 70.1
FvH4_1g06150 Fragaria vesca HOM05D005801 ORTHO05D008555 2.8e-148 529.6 637 50.1
Cc06_g10480 Coffea canephora HOM05D005801 ORTHO05D008555 1.1e-147 527.7 477 62.1
FAN26G1273 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.2e-146 524.2 664 48.6
Dinv36686 Davidia involucrata HOM05D005801 ORTHO05D008555 4.5e-146 522.3 590 53.6
Lj4P387T11 Lonicera japonica HOM05D005801 ORTHO05D008555 7.7e-146 521.5 462 63.9
FAN19G1715 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.0e-145 521.2 630 50.6
FAN23G0343 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.1e-144 517.7 645 49.6
Peaxi162Scf00720g00044 Petunia axillaris HOM05D005801 ORTHO05D008555 1.1e-144 517.7 464 62.9
THA.LOC104814572 Tarenaya hassleriana HOM05D005801 ORTHO05D008555 1.1e-144 517.7 594 52.7
Oeu053186.1 Olea europaea HOM05D005801 ORTHO05D008555 1.9e-144 516.9 417 67.6
Nitab4.5_0000066g0110 Nicotiana tabacum HOM05D005801 ORTHO05D008555 3.2e-144 516.2 463 63.5
Nitab4.5_0001703g0010 Nicotiana tabacum HOM05D005801 ORTHO05D008555 7.2e-144 515.0 463 63.1
SalBow1G2797 Salvia bowleyana HOM05D005801 ORTHO05D008555 9.4e-144 514.6 550 55.8
MELO3C015412.2 Cucumis melo HOM05D005801 ORTHO05D008555 6.1e-143 511.9 515 57.7
CsaV3_1G039790 Cucumis sativus L. HOM05D005801 ORTHO05D008555 6.1e-143 511.9 464 62.1
DCAR_028663 Daucus carota HOM05D005801 ORTHO05D008555 8.0e-143 511.5 355 74.6
MD02G1065700 Malus domestica HOM05D005801 ORTHO05D008555 1.4e-142 510.8 387 68.2
PGSC0003DMG400038162 Solanum tuberosum HOM05D005801 ORTHO05D008555 2.3e-142 510.0 428 65.7
Eucgr.C00997 Eucalyptus grandis HOM05D005801 ORTHO05D008555 3.0e-142 509.6 464 62.1
vmacro06253 Vaccinium macrocarpon HOM05D005801 ORTHO05D008555 4.0e-142 509.2 457 63.7
Sopen05g014540 Solanum pennellii HOM05D005801 ORTHO05D008555 2.6e-141 506.5 426 65.3
EL10Ac8g18377 Beta vulgaris HOM05D005801 ORTHO05D008555 5.7e-141 505.4 556 52.7
Ciclev10007826m.g Citrus clementina HOM05D005801 ORTHO05D008555 5.7e-141 505.4 579 53.0
CAN.G370.29 Capsicum annuum HOM05D005801 ORTHO05D008555 9.8e-141 504.6 412 66.5
FAN19G0317 Fragaria x ananassa HOM05D005801 ORTHO05D008555 9.8e-141 504.6 355 72.4
Rhsim03G0236600 Rhododendron simsii HOM05D005801 ORTHO05D008555 1.3e-140 504.2 422 66.6
FAN26G1315 Fragaria x ananassa HOM05D005801 ORTHO05D008555 3.7e-140 502.7 366 71.0
Migut.K00541 Erythranthe guttata HOM05D005801 ORTHO05D008555 1.4e-139 500.7 462 60.0
MSTRG.10602 Avicennia marina HOM05D005801 ORTHO05D008555 5.4e-139 498.8 550 54.7
Aqoxy7G01401 Aquilegia oxysepala HOM05D005801 ORTHO05D008555 6.5e-137 491.9 337 73.3
Sed0027809 Sechium edule HOM05D005801 ORTHO05D008555 6.5e-137 491.9 481 58.4
Solyc05g017990.4 Solanum lycopersicum HOM05D005801 ORTHO05D008555 2.5e-136 490.0 455 61.1
Sp3g33210 Schrenkiella parvula HOM05D005801 ORTHO05D008555 9.4e-136 488.0 433 63.0
Thhalv10002296m.g Eutrema salsugineum HOM05D005801 ORTHO05D008555 1.2e-135 487.6 429 63.4
AL3G48350 Arabidopsis lyrata HOM05D005801 ORTHO05D008555 1.6e-135 487.3 427 62.5
Sc18g0001500 Simmondsia chinensis HOM05D005801 ORTHO05D008555 1.8e-134 483.8 571 51.8
AT2G19870 Arabidopsis thaliana HOM05D005801 ORTHO05D008555 3.0e-134 483.0 601 50.4
unitig_46.g18397 Utricularia gibba HOM05D005801 ORTHO05D008555 7.5e-133 478.4 348 69.3
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 2.8e-132 476.5 435 61.6
Carub.0003s3414 Capsella rubella HOM05D005801 ORTHO05D008555 4.9e-132 475.7 431 61.9
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 3.1e-131 473.0 567 52.6
BraA07t27882Z Brassica rapa HOM05D005801 ORTHO05D008555 5.4e-131 472.2 569 53.1
BcaB03g16775 Brassica carinata HOM05D005801 ORTHO05D008555 1.2e-130 471.1 580 51.0
MBI04_g34406_MAGBIO Magnolia biondii HOM05D005801 ORTHO05D008555 1.2e-130 471.1 345 71.3
BcaC06g36648 Brassica carinata HOM05D005801 ORTHO05D008555 2.0e-130 470.3 569 52.4
BolC7t40588H Brassica oleracea HOM05D005801 ORTHO05D008555 2.0e-130 470.3 569 52.4
C07p01810 Brassica napus HOM05D005801 ORTHO05D008555 2.9e-129 466.5 587 50.6
CDE04G1187 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 1.9e-128 463.8 467 56.3
ATR0681G166 Amborella trichopoda HOM05D005801 ORTHO05D008555 1.6e-127 460.7 343 67.3
PSO063G7511 Papaver somniferum HOM05D005801 ORTHO05D008555 2.1e-127 460.3 305 77.7
ECA234G2262 Erigeron canadensis HOM05D005801 ORTHO05D008555 8.0e-127 458.4 347 68.9
PSO832G4312 Papaver somniferum HOM05D005801 ORTHO05D008555 1.0e-126 458.0 300 78.3
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 1.8e-126 457.2 361 65.9
SGA_v2.0_scaffold129G34141 Striga asiatica HOM05D005801 ORTHO05D008555 8.9e-126 454.9 549 51.9
Zm00001eb371210 Zea mays HOM05D005801 ORTHO05D008555 9.2e-123 444.9 312 70.5
SHI02689 Sapria himalayana HOM05D005801 ORTHO05D008555 1.3e-121 441.0 471 53.7
Aa31LG8G16820 Aethionema arabicum HOM05D005801 ORTHO05D008555 1.7e-121 440.7 404 57.7
Actinidia32650 Actinidia chinensis HOM05D005801 ORTHO05D008555 1.1e-120 438.0 310 74.2
HPP92_009088 Vanilla planifolia HOM05D005801 ORTHO05D008555 1.5e-120 437.6 391 60.1
Cpa.g.sc40.94 Carica papaya HOM05D005801 ORTHO05D008555 9.5e-120 434.9 279 80.3
AUR62021403 Chenopodium quinoa HOM05D005801 ORTHO05D008555 5.8e-117 425.6 478 53.1
AUR62010892 Chenopodium quinoa HOM05D005801 ORTHO05D008555 3.5e-114 416.4 478 52.7
HanXRQChr10g0318931 Helianthus annuus HOM05D005801 ORTHO05D008555 3.9e-113 412.9 286 75.2
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 8.6e-113 411.8 286 75.2
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 8.6e-113 411.8 286 75.2
MD15G1196600 Malus domestica HOM05D005801 ORTHO05D008555 1.9e-104 384.0 270 74.1
Lalb_Chr09g0331541 Lupinus albus HOM05D005801 ORTHO05D008555 1.3e-81 308.1 231 72.3
Mapoly0135s0034 Marchantia polymorpha HOM05D005801 ORTHO05D008555 1.4e-78 298.1 330 50.0
FvH4_1g06190 Fragaria vesca HOM05D005801 ORTHO05D008555 9.9e-77 292.0 175 81.1
Pp3c17_17180 Physcomitrium patens HOM05D005801 ORTHO05D008555 9.3e-75 285.4 310 50.6
CBR_g20364 Chara braunii HOM05D005801 ORTHO05D008555 2.5e-72 277.3 291 51.5
Lalb_Chr09g0331551 Lupinus albus HOM05D005801 ORTHO05D008555 4.6e-66 256.5 310 53.5
SMO367G0373 Selaginella moellendorffii HOM05D005801 ORTHO05D008555 2.1e-63 247.7 277 49.8
Lj6C67T4 Lonicera japonica HOM05D005801 ORTHO05D008555 4.5e-61 240.0 176 70.5
CAN.G640.23 Capsicum annuum HOM05D005801 ORTHO05D008555 1.3e-52 211.8 207 58.5
Os01g0742000 Oryza sativa ssp. japonica HOM05D005801 ORTHO05D008555 6.1e-50 203.0 149 73.8
MCO03G539 Micromonas commoda HOM05D005801 ORTHO05D008555 3.7e-47 193.7 306 40.2
PRCOL_00003145 Prasinoderma coloniale HOM05D005801 ORTHO05D008555 4.8e-47 193.4 285 43.2
Cre13.g566150 Chlamydomonas reinhardtii HOM05D005801 ORTHO05D008555 1.4e-46 191.8 297 39.7
CAN.G775.15 Capsicum annuum HOM05D005801 ORTHO05D008555 6.9e-46 189.5 287 42.2
CDE02G3237 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 1.0e-44 185.7 464 33.0
HanXRQChr12g0378121 Helianthus annuus HOM05D005801 ORTHO05D008555 9.1e-38 162.5 153 55.6
CAN.G1277.2 Capsicum annuum HOM05D005801 ORTHO05D008555 5.2e-33 146.7 289 39.4
CAN.G77.3 Capsicum annuum HOM05D005801 ORTHO05D008555 1.6e-21 108.6 83 65.1
EL10Ac8g19871 Beta vulgaris HOM05D005801 ORTHO05D008555 2.7e-18 97.8 82 63.4
BcaC04g20246 Brassica carinata HOM05D005801 ORTHO05D016715 2.8e-15 87.8 83 51.8
BolC9t57462H Brassica oleracea HOM05D005801 ORTHO05D016715 2.8e-15 87.8 83 51.8
C09p45950 Brassica napus HOM05D005801 ORTHO05D016715 4.9e-15 87.0 83 50.6
Medtr8g046830 Medicago truncatula HOM05D005801 ORTHO05D008555 8.3e-15 86.3 60 71.7
A07p26140 Brassica napus HOM05D005801 ORTHO05D013666 5.9e-13 80.1 70 55.7
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 5.9e-13 80.1 264 26.1
BraA07t30260Z Brassica rapa HOM05D005801 ORTHO05D013666 2.9e-12 77.8 70 54.3
BcaC03g16316 Brassica carinata HOM05D005801 ORTHO05D016715 3.3e-11 74.3 71 47.9
C03p54440 Brassica napus HOM05D005801 ORTHO05D041341 1.2e-10 72.4 56 60.7
BolC3t17730H Brassica oleracea HOM05D005801 ORTHO05D041341 1.2e-10 72.4 56 60.7
BcaC04g22492 Brassica carinata HOM05D005801 ORTHO05D016715 2.1e-10 71.6 64 54.7
BcaB08g34890 Brassica carinata HOM05D005801 ORTHO05D008555 2.8e-10 71.2 80 55.0
MD01G1041100 Malus domestica HOM05D007191 ORTHO05D009370 3.2e-06 57.8 179 32.4


User provided reference genes

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