Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G232251 Glycine max HOM05D004970 ORTHO05D005665 2.5e-98 362.1 182 100.0
Glyma.12G013300 Glycine max HOM05D004970 ORTHO05D005665 2.2e-65 252.7 139 91.4
Glyma.09G223600 Glycine max HOM05D004970 ORTHO05D005665 5.9e-63 244.6 139 89.2
VMungo1127G0435 Vigna mungo HOM05D004970 ORTHO05D005665 1.8e-56 223.0 137 81.8
Phvul.011G016400 Phaseolus vulgaris HOM05D004970 ORTHO05D005665 1.0e-54 217.2 141 79.4
arahy.Tifrunner.gnm1.ann1.N044W1 Arachis hypogaea HOM05D004970 ORTHO05D005665 3.1e-51 205.7 136 76.5
arahy.Tifrunner.gnm1.ann1.TJCL76 Arachis hypogaea HOM05D004970 ORTHO05D005665 3.1e-51 205.7 136 76.5
Lj3g0014992 Lotus japonicus HOM05D004970 ORTHO05D005665 4.9e-49 198.4 134 75.4
Lalb_Chr19g0140121 Lupinus albus HOM05D004970 ORTHO05D005665 2.4e-48 196.1 138 71.7
Medtr0172s0030 Medicago truncatula HOM05D004970 ORTHO05D005665 4.3e-45 185.3 135 70.4
Lalb_Chr01g0000711 Lupinus albus HOM05D004970 ORTHO05D005665 4.0e-43 178.7 139 70.5
TPR.G20254 Trifolium pratense HOM05D004970 ORTHO05D005665 2.9e-41 172.6 141 68.1
Haze_00346 Corylus avellana HOM05D004970 ORTHO05D005665 6.4e-41 171.4 136 64.7
Ca_00814_v3 Cicer arietinum L. HOM05D004970 ORTHO05D005665 1.1e-40 170.6 144 66.0
Thecc.05G227300 Theobroma cacao HOM05D004970 ORTHO05D005665 3.5e-39 165.6 143 64.3
COL.COLO4_08410 Corchorus olitorius HOM05D004970 ORTHO05D005665 1.0e-38 164.1 139 64.7
Psat7g161560 Pisum sativum HOM05D004970 ORTHO05D005665 1.3e-38 163.7 135 68.1
Ciclev10031289m.g Citrus clementina HOM05D004970 ORTHO05D005665 3.0e-38 162.5 138 64.5
CiPaw.05G210700 Carya illinoinensis HOM05D004970 ORTHO05D005665 5.1e-38 161.8 137 61.3
Ca_13824_v3 Cicer arietinum L. HOM05D004970 ORTHO05D005665 5.1e-38 161.8 144 63.2
Duzib177G0786 Durio zibethinus HOM05D004970 ORTHO05D005665 5.6e-37 158.3 136 64.7
Cfa016111 Carpinus fangiana HOM05D004970 ORTHO05D005665 1.6e-36 156.8 129 62.0
Atru.chr12.1813 Acer truncatum HOM05D004970 ORTHO05D005665 2.1e-36 156.4 137 61.3
Gohir.D08G239800 Gossypium hirsutum HOM05D004970 ORTHO05D005665 2.8e-36 156.0 140 61.4
Gorai.004G255000 Gossypium raimondii HOM05D004970 ORTHO05D005665 8.1e-36 154.5 140 60.7
Duzib128G2026 Durio zibethinus HOM05D004970 ORTHO05D005665 1.4e-35 153.7 136 62.5
Gohir.D11G234800 Gossypium hirsutum HOM05D004970 ORTHO05D005665 4.0e-35 152.1 139 58.3
Gorai.007G247500 Gossypium raimondii HOM05D004970 ORTHO05D005665 4.0e-35 152.1 139 58.3
Gohir.A08G221630 Gossypium hirsutum HOM05D004970 ORTHO05D005665 1.5e-34 150.2 140 60.0
TWI60G0079 Tripterygium wilfordii HOM05D004970 ORTHO05D005665 2.0e-34 149.8 136 61.0
Potri.019G043300 Populus trichocarpa HOM05D004970 ORTHO05D005665 1.3e-33 147.1 170 51.2
Manes.09G130800 Manihot esculenta HOM05D004970 ORTHO05D005665 3.8e-33 145.6 129 59.7
CiPaw.06G037800 Carya illinoinensis HOM05D004970 ORTHO05D005665 4.9e-33 145.2 147 55.1
Gohir.A11G221400 Gossypium hirsutum HOM05D004970 ORTHO05D005665 6.4e-33 144.8 139 56.8
TWI32G0575 Tripterygium wilfordii HOM05D004970 ORTHO05D005665 6.4e-33 144.8 137 59.9
Manes.08G159000 Manihot esculenta HOM05D004970 ORTHO05D005665 2.4e-32 142.9 139 56.8
Prupe.2G329700 Prunus persica HOM05D004970 ORTHO05D005665 2.1e-31 139.8 141 58.2
Sabra19G0054000 Salix brachista HOM05D004970 ORTHO05D005665 3.5e-31 139.0 170 49.4
Aa31LG2G2110 Aethionema arabicum HOM05D004970 ORTHO05D005665 2.3e-30 136.3 139 55.4
Cpa.g.sc43.154 Carica papaya HOM05D004970 ORTHO05D005665 6.6e-30 134.8 133 57.1
ClCG02G007910 Citrullus lanatus HOM05D004970 ORTHO05D005665 1.1e-29 134.0 138 54.3
Potri.013G075400 Populus trichocarpa HOM05D004970 ORTHO05D005665 2.5e-29 132.9 131 56.5
Nn1g09277 Nelumbo nucifera HOM05D004970 ORTHO05D005665 1.6e-28 130.2 132 53.8
AT1G64860 Arabidopsis thaliana HOM05D004970 ORTHO05D005665 2.8e-28 129.4 138 53.6
TAR375G0320 Trochodendron aralioides HOM05D004970 ORTHO05D005665 2.8e-28 129.4 136 55.9
AL2G19270 Arabidopsis lyrata HOM05D004970 ORTHO05D005665 3.6e-28 129.0 142 54.2
Nn3g19169 Nelumbo nucifera HOM05D004970 ORTHO05D005665 3.6e-28 129.0 133 53.4
Rhsim03G0225500 Rhododendron simsii HOM05D004970 ORTHO05D005665 4.7e-28 128.6 138 52.9
CsaV3_2G035830 Cucumis sativus L. HOM05D004970 ORTHO05D005665 6.2e-28 128.3 136 50.7
Thhalv10002486m.g Eutrema salsugineum HOM05D004970 ORTHO05D005665 6.2e-28 128.3 143 51.7
THA.LOC104821684 Tarenaya hassleriana HOM05D004970 ORTHO05D005665 1.1e-27 127.5 138 52.2
MD01G1240100 Malus domestica HOM05D004970 ORTHO05D005665 1.4e-27 127.1 140 55.0
Dinv17236 Davidia involucrata HOM05D004970 ORTHO05D005665 3.1e-27 125.9 130 57.7
MELO3C024760.2 Cucumis melo HOM05D004970 ORTHO05D005665 4.0e-27 125.6 137 51.1
BcaB05g23594 Brassica carinata HOM05D004970 ORTHO05D005665 1.5e-26 123.6 149 48.3
DCAR_020435 Daucus carota HOM05D004970 ORTHO05D005665 2.0e-26 123.2 135 54.8
Sed0007466 Sechium edule HOM05D004970 ORTHO05D005665 2.0e-26 123.2 136 50.7
CARHR056270 Cardamine hirsuta HOM05D004970 ORTHO05D005665 2.6e-26 122.9 145 50.3
CSS0041522 Camellia sinensis var. sinensis HOM05D004970 ORTHO05D005665 3.4e-26 122.5 137 54.7
Sed0000344 Sechium edule HOM05D004970 ORTHO05D005665 4.4e-26 122.1 135 50.4
Carub.0002s0979 Capsella rubella HOM05D004970 ORTHO05D005665 5.8e-26 121.7 141 49.6
Sabra13G0064900 Salix brachista HOM05D004970 ORTHO05D005665 7.6e-26 121.3 131 51.1
vmacro06358 Vaccinium macrocarpon HOM05D004970 ORTHO05D005665 7.6e-26 121.3 138 52.9
GSVIVG01024261001 Vitis vinifera HOM05D004970 ORTHO05D005665 7.6e-26 121.3 146 55.5
CSS0006334 Camellia sinensis var. sinensis HOM05D004970 ORTHO05D005665 1.7e-25 120.2 138 55.8
MD07G1311500 Malus domestica HOM05D004970 ORTHO05D005665 1.7e-25 120.2 141 51.8
CSS0029772 Camellia sinensis var. sinensis HOM05D004970 ORTHO05D005665 3.8e-25 119.0 137 54.0
Sc13g0011030 Simmondsia chinensis HOM05D004970 ORTHO05D005665 3.8e-25 119.0 132 54.5
Sp5g19000 Schrenkiella parvula HOM05D004970 ORTHO05D005665 4.9e-25 118.6 143 49.7
FAN10G0750 Fragaria x ananassa HOM05D004970 ORTHO05D005665 8.4e-25 117.9 141 51.8
FAN03G2928 Fragaria x ananassa HOM05D004970 ORTHO05D005665 1.1e-24 117.5 141 51.8
RcHm_v2.0_Chr1g0384631 Rosa chinensis HOM05D004970 ORTHO05D005665 1.4e-24 117.1 141 51.1
ECA233G0740 Erigeron canadensis HOM05D004970 ORTHO05D005665 1.9e-24 116.7 152 50.0
Peaxi162Scf00516g00423 Petunia axillaris HOM05D004970 ORTHO05D005665 2.4e-24 116.3 130 53.1
FAN01G0343 Fragaria x ananassa HOM05D004970 ORTHO05D005665 4.2e-24 115.5 143 51.0
Nitab4.5_0000021g0930 Nicotiana tabacum HOM05D004970 ORTHO05D005665 5.4e-24 115.2 134 51.5
FvH4_7g34280 Fragaria vesca HOM05D004970 ORTHO05D005665 9.3e-24 114.4 143 50.3
Sopen03g028090 Solanum pennellii HOM05D004970 ORTHO05D005665 9.3e-24 114.4 145 49.7
Solyc03g097320.3 Solanum lycopersicum HOM05D004970 ORTHO05D005665 1.6e-23 113.6 135 52.6
Lsat_1_v5_gn_8_14040 Lactuca sativa HOM05D004970 ORTHO05D005665 2.7e-23 112.8 130 53.8
Nitab4.5_0005545g0050 Nicotiana tabacum HOM05D004970 ORTHO05D005665 7.8e-23 111.3 131 50.4
Peaxi162Scf00815g00348 Petunia axillaris HOM05D004970 ORTHO05D005665 7.8e-23 111.3 134 50.7
CAN.G732.31 Capsicum annuum HOM05D004970 ORTHO05D005665 1.7e-22 110.2 130 53.1
Lj3C883T3 Lonicera japonica HOM05D004970 ORTHO05D005665 2.3e-22 109.8 142 44.4
EL10Ac2g02539 Beta vulgaris HOM05D004970 ORTHO05D005665 6.6e-22 108.2 136 48.5
HanXRQChr05g0144361 Helianthus annuus HOM05D004970 ORTHO05D005665 1.9e-21 106.7 152 47.4
Lsat_1_v5_gn_2_127081 Lactuca sativa HOM05D004970 ORTHO05D005665 4.3e-21 105.5 128 51.6
C02p37850 Brassica napus HOM05D004970 ORTHO05D005665 5.6e-21 105.1 145 44.1
BolC2t09801H Brassica oleracea HOM05D004970 ORTHO05D005665 5.6e-21 105.1 145 44.1
HanXRQChr08g0223061 Helianthus annuus HOM05D004970 ORTHO05D005665 1.3e-20 104.0 152 46.7
HanXRQChr14g0461121 Helianthus annuus HOM05D004970 ORTHO05D005665 1.3e-20 104.0 142 46.5
Nitab4.5_0002998g0010 Nicotiana tabacum HOM05D004970 ORTHO05D005665 1.6e-20 103.6 135 48.9
A02p24000 Brassica napus HOM05D004970 ORTHO05D005665 2.1e-20 103.2 140 45.7
BraA02t07395Z Brassica rapa HOM05D004970 ORTHO05D005665 2.1e-20 103.2 140 45.7
BcaC03g16031 Brassica carinata HOM05D004970 ORTHO05D005665 2.8e-20 102.8 148 42.6
Oeu028991.1 Olea europaea HOM05D004970 ORTHO05D005665 2.8e-20 102.8 131 52.7
Ah.10g025760 Amaranthus hybridus HOM05D004970 ORTHO05D005665 8.1e-20 101.3 137 46.0
CAN.G65.124 Capsicum annuum HOM05D004970 ORTHO05D005665 1.8e-19 100.1 130 50.0
AUR62032380 Chenopodium quinoa HOM05D004970 ORTHO05D005665 1.8e-19 100.1 131 49.6
PSO063G5802 Papaver somniferum HOM05D004970 ORTHO05D005665 2.4e-19 99.8 136 47.8
MBI04_g30791_MAGBIO Magnolia biondii HOM05D004970 ORTHO05D005665 3.1e-19 99.4 131 47.3
PSO782G0173 Papaver somniferum HOM05D004970 ORTHO05D005665 3.1e-19 99.4 136 47.8
Sopen06g029080 Solanum pennellii HOM05D004970 ORTHO05D005665 3.1e-19 99.4 129 48.8
PGSC0003DMG400027038 Solanum tuberosum HOM05D004970 ORTHO05D005665 6.9e-19 98.2 131 48.9
MSTRG.8566 Avicennia marina HOM05D004970 ORTHO05D005665 9.0e-19 97.8 129 49.6
Nitab4.5_0000645g0090 Nicotiana tabacum HOM05D004970 ORTHO05D005665 1.2e-18 97.4 133 45.9
CDE01G0673 Ceratophyllum demersum HOM05D004970 ORTHO05D005665 2.0e-18 96.7 134 45.5
Solyc06g072710.3 Solanum lycopersicum HOM05D004970 ORTHO05D005665 3.4e-18 95.9 129 47.3
Cc02_g00040 Coffea canephora HOM05D004970 ORTHO05D005665 5.8e-18 95.1 135 45.9
CDE12G0545 Ceratophyllum demersum HOM05D004970 ORTHO05D005665 7.6e-18 94.7 134 44.0
AUR62024839 Chenopodium quinoa HOM05D004970 ORTHO05D005665 7.6e-18 94.7 138 46.4
ECA238G3380 Erigeron canadensis HOM05D004970 ORTHO05D005665 7.6e-18 94.7 177 37.9
Aqoxy3G01903 Aquilegia oxysepala HOM05D004970 ORTHO05D005665 1.3e-17 94.0 137 47.4
ATR0568G198 Amborella trichopoda HOM05D004970 ORTHO05D005665 3.8e-17 92.4 129 46.5
ECA232G1337 Erigeron canadensis HOM05D004970 ORTHO05D005665 1.1e-16 90.9 148 42.6
Migut.H00003 Erythranthe guttata HOM05D004970 ORTHO05D005665 3.9e-14 82.4 132 47.0
Lsat_1_v5_gn_9_50600 Lactuca sativa HOM05D004970 ORTHO05D005665 3.9e-14 82.4 137 43.1
CANSAT21G0704 Cannabis sativa HOM05D004970 ORTHO05D005665 2.1e-12 76.6 147 42.2
Ah.12g063400 Amaranthus hybridus HOM05D004970 ORTHO05D005665 6.9e-11 71.6 175 30.9
unitig_0.g2402 Utricularia gibba HOM05D004970 ORTHO05D005665 6.4e-09 65.1 132 35.6
SEGI_26324 Sequoiadendron giganteum HOM05D004970 ORTHO05D005665 8.4e-09 64.7 132 35.6
Eucgr.A02994 Eucalyptus grandis HOM05D004970 ORTHO05D005665 1.4e-08 63.9 153 37.3
MSTRG.26919 Avicennia marina HOM05D004970 ORTHO05D005665 9.3e-08 61.2 132 38.6
unitig_52.g17686 Utricularia gibba HOM05D004970 ORTHO05D005665 9.3e-08 61.2 130 35.4
PGSC0003DMG400026491 Solanum tuberosum HOM05D004970 ORTHO05D005665 2.7e-07 59.7 67 55.2
arahy.Tifrunner.gnm1.ann1.J8WNHI Arachis hypogaea HOM05D000073 ORTHO05D010773 5.1e-06 55.5 47 51.1
Glyma.12G054400 Glycine max HOM05D000073 ORTHO05D000033 6.7e-06 55.1 84 40.5
Glyma.11G129700 Glycine max HOM05D000073 ORTHO05D000033 8.7e-06 54.7 89 32.6
Glyma.11G129800 Glycine max HOM05D000073 ORTHO05D000033 8.7e-06 54.7 89 32.6


User provided reference genes

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