Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G203300 Glycine max HOM05D006143 ORTHO05D007587 3.6e-258 894.4 465 100.0
Glyma.13G172400 Glycine max HOM05D006143 ORTHO05D007587 1.6e-234 815.8 466 91.8
Phvul.003G056900 Phaseolus vulgaris HOM05D006143 ORTHO05D007587 1.7e-194 682.9 477 77.1
Lj4g0027541 Lotus japonicus HOM05D006143 ORTHO05D007587 1.8e-185 652.9 474 72.8
TPR.G16154 Trifolium pratense HOM05D006143 ORTHO05D007587 2.3e-180 636.0 474 71.9
Lalb_Chr16g0384181 Lupinus albus HOM05D006143 ORTHO05D007587 6.6e-175 617.8 478 67.8
Psat7g118360 Pisum sativum HOM05D006143 ORTHO05D007587 2.1e-173 612.8 474 70.0
arahy.Tifrunner.gnm1.ann1.W3DLTW Arachis hypogaea HOM05D006143 ORTHO05D007587 7.5e-171 604.4 476 68.3
Ca_26041_v3 Cicer arietinum L. HOM05D006143 ORTHO05D007587 2.2e-170 602.8 436 73.6
arahy.Tifrunner.gnm1.ann1.VAEI8B Arachis hypogaea HOM05D006143 ORTHO05D007587 8.3e-170 600.9 478 67.4
Medtr4g087975 Medicago truncatula HOM05D006143 ORTHO05D007587 1.8e-164 583.2 484 67.1
Medtr6g039570 Medicago truncatula HOM05D006143 ORTHO05D007587 6.6e-151 538.1 461 63.3
VMungo0251G1209 Vigna mungo HOM05D006143 ORTHO05D007587 9.0e-132 474.6 325 76.6
CiPaw.10G054900 Carya illinoinensis HOM05D006143 ORTHO05D007587 1.3e-130 470.7 467 53.5
Dinv17374 Davidia involucrata HOM05D006143 ORTHO05D007587 1.8e-127 460.3 473 53.7
GSVIVG01021150001 Vitis vinifera HOM05D006143 ORTHO05D007587 1.8e-127 460.3 475 51.6
Prupe.4G055900 Prunus persica HOM05D006143 ORTHO05D007587 7.4e-126 454.9 478 51.7
RcHm_v2.0_Chr5g0009801 Rosa chinensis HOM05D006143 ORTHO05D007587 2.8e-125 453.0 477 52.2
MD05G1306600 Malus domestica HOM05D006143 ORTHO05D007587 2.0e-123 446.8 479 52.2
Potri.011G062100 Populus trichocarpa HOM05D006143 ORTHO05D007587 8.4e-122 441.4 465 52.9
FvH4_7g02070 Fragaria vesca HOM05D006143 ORTHO05D007587 4.6e-120 435.6 475 51.4
FAN06G1438 Fragaria x ananassa HOM05D006143 ORTHO05D007587 7.9e-120 434.9 483 50.9
Sabra11G0044000 Salix brachista HOM05D006143 ORTHO05D007587 8.7e-119 431.4 464 51.3
Manes.16G034450 Manihot esculenta HOM05D006143 ORTHO05D007587 1.5e-118 430.6 478 52.1
FAN03G1069 Fragaria x ananassa HOM05D006143 ORTHO05D007587 8.2e-117 424.9 485 50.5
Duzib235G0124 Durio zibethinus HOM05D006143 ORTHO05D007587 1.4e-113 414.1 468 48.9
FAN11G1643 Fragaria x ananassa HOM05D006143 ORTHO05D007587 1.9e-113 413.7 476 49.8
Thecc.06G177300 Theobroma cacao HOM05D006143 ORTHO05D007587 5.5e-113 412.1 467 49.3
Haze_06321 Corylus avellana HOM05D006143 ORTHO05D007587 2.7e-112 409.8 443 50.1
Hma1.2p1_0155F.1_g068560 Hydrangea macrophylla HOM05D006143 ORTHO05D007587 4.6e-112 409.1 468 50.6
Atru.chr10.1746 Acer truncatum HOM05D006143 ORTHO05D007587 5.1e-111 405.6 475 49.5
CSS0012799 Camellia sinensis var. sinensis HOM05D006143 ORTHO05D007587 5.1e-111 405.6 471 48.8
Eucgr.E03166 Eucalyptus grandis HOM05D006143 ORTHO05D007587 4.3e-110 402.5 473 47.4
MELO3C002630.2 Cucumis melo HOM05D006143 ORTHO05D007587 1.7e-109 400.6 475 47.2
ClCG03G007960 Citrullus lanatus HOM05D006143 ORTHO05D007587 2.2e-109 400.2 475 47.8
Ciclev10015477m.g Citrus clementina HOM05D006143 ORTHO05D007587 2.4e-108 396.7 411 51.8
FAN21G2423 Fragaria x ananassa HOM05D006143 ORTHO05D007587 2.6e-107 393.3 476 48.7
ECA234G2393 Erigeron canadensis HOM05D006143 ORTHO05D007587 4.2e-105 386.0 461 47.3
Sc05g0007290 Simmondsia chinensis HOM05D006143 ORTHO05D007587 9.4e-105 384.8 477 46.5
FAN16G0487 Fragaria x ananassa HOM05D006143 ORTHO05D007587 2.7e-104 383.3 463 47.7
TWI63G1355 Tripterygium wilfordii HOM05D006143 ORTHO05D007587 1.0e-103 381.3 462 47.2
Nn1g04309 Nelumbo nucifera HOM05D006143 ORTHO05D007587 1.8e-103 380.6 448 46.4
Gorai.011G031600 Gossypium raimondii HOM05D006143 ORTHO05D007587 1.4e-100 370.9 465 44.5
DCAR_007976 Daucus carota HOM05D006143 ORTHO05D007587 1.8e-100 370.5 472 45.6
Lsat_1_v5_gn_4_50941 Lactuca sativa HOM05D006143 ORTHO05D007587 2.4e-100 370.2 477 45.1
Gohir.D10G029700 Gossypium hirsutum HOM05D006143 ORTHO05D007587 4.5e-99 365.9 465 44.1
Oeu045072.2 Olea europaea HOM05D006143 ORTHO05D007587 1.7e-98 364.0 456 47.1
Cpa.g.sc7.33 Carica papaya HOM05D006143 ORTHO05D007587 5.0e-98 362.5 474 47.9
EL10Ac8g20474 Beta vulgaris HOM05D006143 ORTHO05D007587 8.5e-98 361.7 477 44.0
Hund23878 Selenicereus undatus HOM05D006143 ORTHO05D007587 1.9e-97 360.5 481 44.7
PGR042G3042 Punica granatum HOM05D006143 ORTHO05D007587 1.4e-95 354.4 447 44.3
Aqoxy4G00545 Aquilegia oxysepala HOM05D006143 ORTHO05D007587 3.0e-95 353.2 464 43.5
Cc02_g14290 Coffea canephora HOM05D006143 ORTHO05D007587 3.0e-95 353.2 468 43.4
Migut.M01078 Erythranthe guttata HOM05D006143 ORTHO05D007587 4.4e-94 349.4 471 45.9
PGSC0003DMG400010721 Solanum tuberosum HOM05D006143 ORTHO05D007587 9.7e-94 348.2 474 43.9
Sed0020086 Sechium edule HOM05D006143 ORTHO05D007587 3.7e-93 346.3 411 46.2
HanXRQChr11g0327231 Helianthus annuus HOM05D006143 ORTHO05D007587 6.3e-93 345.5 465 41.5
PSO832G2207 Papaver somniferum HOM05D006143 ORTHO05D007587 1.8e-92 344.0 466 42.5
COL.COLO4_31385 Corchorus olitorius HOM05D006143 ORTHO05D007587 2.4e-92 343.6 444 44.1
MBI07_g06435_MAGBIO Magnolia biondii HOM05D006143 ORTHO05D007587 4.5e-91 339.3 457 44.0
Sopen02g022240 Solanum pennellii HOM05D006143 ORTHO05D007587 5.9e-91 339.0 470 43.6
AUR62014918 Chenopodium quinoa HOM05D006143 ORTHO05D007587 7.7e-91 338.6 467 41.3
Peaxi162Scf00875g00320 Petunia axillaris HOM05D006143 ORTHO05D007587 2.2e-90 337.0 491 42.0
Solyc02g077320.4 Solanum lycopersicum HOM05D006143 ORTHO05D007587 8.0e-88 328.6 464 43.3
THA.LOC104798414 Tarenaya hassleriana HOM05D006143 ORTHO05D007587 5.2e-87 325.9 463 42.3
PSO210G3197 Papaver somniferum HOM05D006143 ORTHO05D007587 9.8e-86 321.6 462 41.3
Sabra11G0042500 Salix brachista HOM05D006143 ORTHO05D007587 4.8e-85 319.3 464 42.5
Ah.01g004290 Amaranthus hybridus HOM05D006143 ORTHO05D007587 1.1e-84 318.2 480 41.0
TAR626G0253 Trochodendron aralioides HOM05D006143 ORTHO05D007587 2.4e-84 317.0 336 50.9
Gohir.A10G029200 Gossypium hirsutum HOM05D006143 ORTHO05D007587 9.1e-84 315.1 436 42.0
Aa31LG6G1190 Aethionema arabicum HOM05D006143 ORTHO05D007587 3.8e-82 309.7 462 40.7
Thhalv10025244m.g Eutrema salsugineum HOM05D006143 ORTHO05D007587 6.5e-82 308.9 462 41.6
CARHR225290 Cardamine hirsuta HOM05D006143 ORTHO05D007587 2.5e-81 307.0 467 41.1
AL7G35830 Arabidopsis lyrata HOM05D006143 ORTHO05D007587 4.2e-81 306.2 462 41.6
Carub.0007s2278 Capsella rubella HOM05D006143 ORTHO05D007587 7.2e-81 305.4 466 42.3
BcaNung05875 Brassica carinata HOM05D006143 ORTHO05D007587 1.6e-80 304.3 463 41.5
C01p12400 Brassica napus HOM05D006143 ORTHO05D007587 1.6e-80 304.3 463 41.7
Cfa000554 Carpinus fangiana HOM05D006143 ORTHO05D007587 2.7e-80 303.5 312 53.2
BolC1t01214H Brassica oleracea HOM05D006143 ORTHO05D007587 4.7e-80 302.8 463 41.5
Sp7g15570 Schrenkiella parvula HOM05D006143 ORTHO05D007587 1.0e-79 301.6 462 41.6
BcaC09g51506 Brassica carinata HOM05D006143 ORTHO05D007587 1.4e-79 301.2 463 41.5
FvH4_3g08270 Fragaria vesca HOM05D006143 ORTHO05D007587 1.8e-79 300.8 355 49.0
AT4G18470 Arabidopsis thaliana HOM05D006143 ORTHO05D007587 5.2e-79 299.3 461 41.2
ATR0602G028 Amborella trichopoda HOM05D006143 ORTHO05D007587 1.5e-78 297.7 460 39.6
CsaV3_1G012630 Cucumis sativus L. HOM05D006143 ORTHO05D007587 2.0e-78 297.4 357 46.8
Actinidia39490 Actinidia chinensis HOM05D006143 ORTHO05D007587 3.4e-78 296.6 476 40.3
BraA01t00988Z Brassica rapa HOM05D006143 ORTHO05D007587 3.4e-78 296.6 463 41.0
AUR62031125 Chenopodium quinoa HOM05D006143 ORTHO05D007587 4.4e-78 296.2 401 41.1
Nitab4.5_0011727g0010 Nicotiana tabacum HOM05D006143 ORTHO05D007587 1.3e-77 294.7 461 39.9
Zm00001eb206790 Zea mays HOM05D006143 ORTHO05D007587 3.8e-74 283.1 458 39.3
A01p10420 Brassica napus HOM05D006143 ORTHO05D007587 5.0e-74 282.7 488 38.9
SGA_v2.0_scaffold16G07658 Striga asiatica HOM05D006143 ORTHO05D007587 1.9e-73 280.8 449 39.6
Eucgr.E02653 Eucalyptus grandis HOM05D006143 ORTHO05D007587 9.5e-73 278.5 302 49.7
Os02g0312800 Oryza sativa ssp. japonica HOM05D006143 ORTHO05D007587 8.0e-72 275.4 458 37.1
Nitab4.5_0000376g0080 Nicotiana tabacum HOM05D006143 ORTHO05D007587 1.7e-69 267.7 440 38.6
CDE02G0230 Ceratophyllum demersum HOM05D006143 ORTHO05D007587 1.3e-66 258.1 473 37.0
HPP92_003901 Vanilla planifolia HOM05D006143 ORTHO05D007587 2.1e-56 224.2 331 41.4
TPR.G16261 Trifolium pratense HOM05D006143 ORTHO05D007587 2.3e-55 220.7 316 47.8
arahy.Tifrunner.gnm1.ann1.74Q5DQ Arachis hypogaea HOM05D006143 ORTHO05D007587 2.9e-53 213.8 155 69.7
unitig_699.g19338 Utricularia gibba HOM05D006143 ORTHO05D007587 5.1e-50 203.0 464 32.8
VMungo0251G1903 Vigna mungo HOM05D006143 ORTHO05D007587 3.3e-49 200.3 154 72.7
arahy.Tifrunner.gnm1.ann1.VQL787 Arachis hypogaea HOM05D006143 ORTHO05D007587 4.1e-44 183.3 118 76.3
arahy.Tifrunner.gnm1.ann1.RYY8E4 Arachis hypogaea HOM05D006143 ORTHO05D007587 3.5e-43 180.3 118 75.4
arahy.Tifrunner.gnm1.ann1.Y1II92 Arachis hypogaea HOM05D006143 ORTHO05D007587 3.5e-43 180.3 118 75.4
RcHm_v2.0_Chr3g0476981 Rosa chinensis HOM05D006143 ORTHO05D007587 1.8e-39 167.9 368 34.2
Rhsim02G0153000 Rhododendron simsii HOM05D006143 ORTHO05D007587 3.8e-37 160.2 182 45.1
arahy.Tifrunner.gnm1.ann1.6ZT1I9 Arachis hypogaea HOM05D006143 ORTHO05D007587 4.6e-35 153.3 118 67.8
arahy.Tifrunner.gnm1.ann1.Y2C9I0 Arachis hypogaea HOM05D006143 ORTHO05D007587 4.9e-29 133.3 119 62.2
MD10G1285900 Malus domestica HOM05D006143 ORTHO05D007587 1.2e-27 128.6 229 37.6
HPP92_003867 Vanilla planifolia HOM05D006143 ORTHO05D007587 1.8e-23 114.8 251 33.9
MD10G1285700 Malus domestica HOM05D006143 ORTHO05D007587 3.8e-21 107.1 75 69.3
Mapoly0071s0015 Marchantia polymorpha HOM05D006143 ORTHO05D007587 1.4e-20 105.1 499 26.5
Nn4g22609 Nelumbo nucifera HOM05D006143 ORTHO05D007587 2.6e-14 84.3 91 54.9
SHI28510 Sapria himalayana HOM05D006143 ORTHO05D007587 2.2e-13 81.3 88 47.7
SEGI_30740 Sequoiadendron giganteum HOM05D006143 ORTHO05D007587 4.9e-13 80.1 162 31.5
SEGI_37534 Sequoiadendron giganteum HOM05D006143 ORTHO05D007587 4.9e-13 80.1 162 31.5
arahy.Tifrunner.gnm1.ann1.SUI2IU Arachis hypogaea HOM05D006143 ORTHO05D007587 6.5e-13 79.7 62 62.9
HPP92_003900 Vanilla planifolia HOM05D006143 ORTHO05D007587 2.1e-11 74.7 122 36.1
TPR.G16274 Trifolium pratense HOM05D006143 ORTHO05D007587 3.5e-11 73.9 61 59.0
Pp3c13_1090 Physcomitrium patens HOM05D006143 ORTHO05D007587 1.8e-10 71.6 423 26.0
AagrBONN_evm.TU.Sc2ySwM_344.2178 Anthoceros agrestis HOM05D006143 ORTHO05D007587 5.1e-10 70.1 454 23.1
SEGI_26564 Sequoiadendron giganteum HOM05D001915 ORTHO05D000007 1.9e-09 68.2 111 33.3
MD10G1285800 Malus domestica HOM05D006143 ORTHO05D007587 6.3e-08 63.2 55 52.7
SMO117G0244 Selaginella moellendorffii HOM05D006143 ORTHO05D007587 1.0e-05 55.8 77 40.3


User provided reference genes

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