Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G148000 Glycine max HOM05D003809 ORTHO05D003935 6.7e-139 497.3 239 100.0
Glyma.18G199300 Glycine max HOM05D003809 ORTHO05D003935 8.2e-121 437.2 239 90.4
VMungo1383G0216 Vigna mungo HOM05D003809 ORTHO05D003935 1.4e-80 303.5 226 68.1
Phvul.008G105500 Phaseolus vulgaris HOM05D003809 ORTHO05D003935 3.1e-80 302.4 236 64.8
Glyma.03G063000 Glycine max HOM05D003809 ORTHO05D003935 4.3e-61 238.8 237 51.9
VMungo0331G1847 Vigna mungo HOM05D003809 ORTHO05D003935 5.6e-61 238.4 237 54.0
Glyma.03G062800 Glycine max HOM05D003809 ORTHO05D003935 1.2e-60 237.3 237 51.9
Glyma.03G062500 Glycine max HOM05D003809 ORTHO05D003935 2.1e-60 236.5 233 52.8
Glyma.01G115000 Glycine max HOM05D003809 ORTHO05D003935 2.8e-60 236.1 237 51.1
Lalb_Chr03g0043131 Lupinus albus HOM05D003809 ORTHO05D003935 2.8e-60 236.1 223 55.6
Lj1g0000205 Lotus japonicus HOM05D003809 ORTHO05D003935 8.9e-59 231.1 249 49.0
Lalb_Chr19g0124721 Lupinus albus HOM05D003809 ORTHO05D003935 3.4e-58 229.2 192 56.2
Glyma.03G061852 Glycine max HOM05D003809 ORTHO05D003935 5.4e-56 221.9 244 49.2
Glyma.03G061700 Glycine max HOM05D003809 ORTHO05D003935 9.2e-56 221.1 208 53.4
Glyma.03G062300 Glycine max HOM05D003809 ORTHO05D003935 9.2e-56 221.1 244 49.6
Lalb_Chr01g0022961 Lupinus albus HOM05D003809 ORTHO05D003935 9.2e-56 221.1 241 49.4
Glyma.U024600 Glycine max HOM05D003809 ORTHO05D003935 3.5e-55 219.2 208 52.9
Glyma.03G061802 Glycine max HOM05D003809 ORTHO05D003935 1.0e-54 217.6 197 54.3
Glyma.03G062100 Glycine max HOM05D003809 ORTHO05D003935 1.0e-54 217.6 197 54.3
Phvul.010G002900 Phaseolus vulgaris HOM05D003809 ORTHO05D003935 3.0e-54 216.1 228 50.0
Lj3g0017704 Lotus japonicus HOM05D003809 ORTHO05D003935 3.3e-53 212.6 236 49.6
TPR.G13325 Trifolium pratense HOM05D003809 ORTHO05D003935 1.4e-51 207.2 235 46.4
arahy.Tifrunner.gnm1.ann1.TSB66L Arachis hypogaea HOM05D003809 ORTHO05D003935 2.2e-49 199.9 250 44.4
Psat7g246040 Pisum sativum HOM05D003809 ORTHO05D003935 2.9e-49 199.5 223 46.2
arahy.Tifrunner.gnm1.ann1.31N575 Arachis hypogaea HOM05D003809 ORTHO05D003935 1.4e-48 197.2 250 46.0
arahy.Tifrunner.gnm1.ann1.3JQR8Y Arachis hypogaea HOM05D003809 ORTHO05D003935 1.4e-48 197.2 250 46.0
Medtr4g015550 Medicago truncatula HOM05D003809 ORTHO05D003935 1.2e-47 194.1 200 49.5
CiPaw.09G207900 Carya illinoinensis HOM05D003809 ORTHO05D003935 5.6e-45 185.3 234 43.6
Lalb_Chr07g0193501 Lupinus albus HOM05D003809 ORTHO05D003935 4.7e-44 182.2 251 41.4
Ca_20297_v3 Cicer arietinum L. HOM05D003809 ORTHO05D003935 6.9e-43 178.3 164 50.6
Atru.chr8.2220 Acer truncatum HOM05D003809 ORTHO05D003935 9.0e-43 177.9 191 47.6
Cfa017221 Carpinus fangiana HOM05D003809 ORTHO05D003935 5.8e-42 175.3 191 46.1
Cfa017222 Carpinus fangiana HOM05D003809 ORTHO05D003935 5.8e-42 175.3 191 46.1
MD04G1150500 Malus domestica HOM05D003809 ORTHO05D003935 2.2e-41 173.3 167 50.9
MD12G1164600 Malus domestica HOM05D003809 ORTHO05D003935 4.9e-41 172.2 166 52.4
Duzib106G1511 Durio zibethinus HOM05D003809 ORTHO05D003935 5.4e-40 168.7 236 41.9
Prupe.6G275300 Prunus persica HOM05D003809 ORTHO05D003935 9.3e-40 167.9 195 47.7
TAR369G0780 Trochodendron aralioides HOM05D003809 ORTHO05D003935 2.7e-39 166.4 184 48.9
Duzib128G0737 Durio zibethinus HOM05D003809 ORTHO05D003935 3.5e-39 166.0 236 42.4
FAN09G2283 Fragaria x ananassa HOM05D003809 ORTHO05D003935 1.0e-38 164.5 157 51.6
Potri.016G114500 Populus trichocarpa HOM05D003809 ORTHO05D003935 1.3e-38 164.1 244 41.4
RcHm_v2.0_Chr3g0463311 Rosa chinensis HOM05D003809 ORTHO05D003935 1.3e-38 164.1 169 49.7
TAR369G1072 Trochodendron aralioides HOM05D003809 ORTHO05D003935 1.3e-38 164.1 184 48.4
Manes.09G104500 Manihot esculenta HOM05D003809 ORTHO05D003935 1.7e-38 163.7 209 43.1
Nn2g11447 Nelumbo nucifera HOM05D003809 ORTHO05D003935 2.3e-38 163.3 150 55.3
FvH4_6g11650 Fragaria vesca HOM05D003809 ORTHO05D003935 6.6e-38 161.8 157 51.0
FAN14G0248 Fragaria x ananassa HOM05D003809 ORTHO05D003935 8.7e-38 161.4 157 51.0
FAN14G4099 Fragaria x ananassa HOM05D003809 ORTHO05D003935 1.1e-37 161.0 149 51.0
Thecc.05G018100 Theobroma cacao HOM05D003809 ORTHO05D003935 1.1e-37 161.0 244 39.3
GSVIVG01033976001 Vitis vinifera HOM05D003809 ORTHO05D003935 1.1e-37 161.0 184 42.9
FAN02G0645 Fragaria x ananassa HOM05D003809 ORTHO05D003935 1.9e-37 160.2 157 51.0
Gohir.D09G160100 Gossypium hirsutum HOM05D003809 ORTHO05D003935 3.3e-37 159.5 185 48.1
Rhsim13G0070300 Rhododendron simsii HOM05D003809 ORTHO05D003935 3.3e-37 159.5 110 60.9
Glyma.03G061751 Glycine max HOM05D003809 ORTHO05D003935 4.3e-37 159.1 155 51.0
CANSAT35G1529 Cannabis sativa HOM05D003809 ORTHO05D003935 7.3e-37 158.3 188 42.0
Gorai.006G181700 Gossypium raimondii HOM05D003809 ORTHO05D003935 9.6e-37 157.9 181 47.0
Ciclev10011409m.g Citrus clementina HOM05D003809 ORTHO05D003935 1.3e-36 157.5 111 61.3
Thhalv10013736m.g Eutrema salsugineum HOM05D003809 ORTHO05D003935 1.3e-36 157.5 163 45.4
Gohir.A09G164500 Gossypium hirsutum HOM05D003809 ORTHO05D003935 1.3e-36 157.5 181 46.4
COL.COLO4_14553 Corchorus olitorius HOM05D003809 ORTHO05D003935 1.6e-36 157.1 167 48.5
Hma1.2p1_0362F.1_g136090 Hydrangea macrophylla HOM05D003809 ORTHO05D003935 1.6e-36 157.1 189 43.9
Lj3A954G70 Lonicera japonica HOM05D003809 ORTHO05D003935 1.6e-36 157.1 141 51.1
Sabra06G0076000 Salix brachista HOM05D003809 ORTHO05D003935 1.6e-36 157.1 166 50.6
Dinv28631 Davidia involucrata HOM05D003809 ORTHO05D003935 2.8e-36 156.4 201 42.3
Manes.08G091100 Manihot esculenta HOM05D003809 ORTHO05D003935 2.8e-36 156.4 160 48.8
Lsat_1_v5_gn_5_155280 Lactuca sativa HOM05D003809 ORTHO05D003935 8.1e-36 154.8 142 44.4
Cc01_g20760 Coffea canephora HOM05D003809 ORTHO05D003935 1.1e-35 154.5 128 56.2
Cc06_g01490 Coffea canephora HOM05D003809 ORTHO05D003935 1.1e-35 154.5 128 56.2
Sc07g0006540 Simmondsia chinensis HOM05D003809 ORTHO05D003935 1.4e-35 154.1 145 44.8
TAR623G0913 Trochodendron aralioides HOM05D003809 ORTHO05D003935 1.4e-35 154.1 150 49.3
Aa31LG1G22880 Aethionema arabicum HOM05D003809 ORTHO05D003935 2.4e-35 153.3 196 37.8
Gorai.007G379100 Gossypium raimondii HOM05D003809 ORTHO05D003935 2.4e-35 153.3 221 40.7
Potri.006G099200 Populus trichocarpa HOM05D003809 ORTHO05D003935 2.4e-35 153.3 169 49.1
ClCG10G022040 Citrullus lanatus HOM05D003809 ORTHO05D003935 3.1e-35 152.9 165 43.6
Gohir.D11G348800 Gossypium hirsutum HOM05D003809 ORTHO05D003935 4.0e-35 152.5 221 40.7
MELO3C009176.2 Cucumis melo HOM05D003809 ORTHO05D003935 5.3e-35 152.1 217 38.2
AT5G01260 Arabidopsis thaliana HOM05D003809 ORTHO05D003935 6.9e-35 151.8 140 47.9
A03p00380 Brassica napus HOM05D003809 ORTHO05D003935 9.0e-35 151.4 153 44.4
COL.COLO4_19141 Corchorus olitorius HOM05D000001 ORTHO05D000003 9.0e-35 151.4 210 41.4
Nn2g13682 Nelumbo nucifera HOM05D003809 ORTHO05D003935 9.0e-35 151.4 126 52.4
Actinidia20726 Actinidia chinensis HOM05D003809 ORTHO05D003935 1.2e-34 151.0 130 53.1
AL6G10910 Arabidopsis lyrata HOM05D003809 ORTHO05D003935 1.2e-34 151.0 151 45.7
CSS0024242 Camellia sinensis var. sinensis HOM05D003809 ORTHO05D003935 1.5e-34 150.6 165 46.1
Cpa.g.sc112.34 Carica papaya HOM05D003809 ORTHO05D003935 1.5e-34 150.6 109 57.8
Cpa.g.sc163.14 Carica papaya HOM05D003809 ORTHO05D003935 1.5e-34 150.6 183 45.4
CsaV3_3G033890 Cucumis sativus L. HOM05D003809 ORTHO05D003935 1.5e-34 150.6 187 43.3
Dinv14451 Davidia involucrata HOM05D003809 ORTHO05D003935 2.0e-34 150.2 161 46.6
PGR004G1101 Punica granatum HOM05D003809 ORTHO05D003935 2.6e-34 149.8 148 48.0
MBI05_g34490_MAGBIO Magnolia biondii HOM05D003809 ORTHO05D003935 3.4e-34 149.4 121 56.2
BraA03t09429Z Brassica rapa HOM05D003809 ORTHO05D003935 4.5e-34 149.1 157 42.0
AUR62001660 Chenopodium quinoa HOM05D000001 ORTHO05D000003 4.5e-34 149.1 126 50.8
Oeu055170.1 Olea europaea HOM05D003809 ORTHO05D003935 5.8e-34 148.7 161 44.1
FAN05G1413 Fragaria x ananassa HOM05D003809 ORTHO05D003935 1.3e-33 147.5 157 49.0
Manes.02G120500 Manihot esculenta HOM05D003809 ORTHO05D003935 1.3e-33 147.5 134 49.3
BolC3t12620H Brassica oleracea HOM05D003809 ORTHO05D003935 1.7e-33 147.1 176 39.2
Carub.0006s0062 Capsella rubella HOM05D003809 ORTHO05D003935 1.7e-33 147.1 160 40.6
Gohir.A11G329600 Gossypium hirsutum HOM05D003809 ORTHO05D003935 2.2e-33 146.7 224 40.2
Manes.01G162300 Manihot esculenta HOM05D003809 ORTHO05D003935 2.2e-33 146.7 149 42.3
PSO339G2972 Papaver somniferum HOM05D003809 ORTHO05D003935 2.2e-33 146.7 129 49.6
Sabra09G0032300 Salix brachista HOM05D000001 ORTHO05D000003 2.2e-33 146.7 136 47.1
TWI74G0880 Tripterygium wilfordii HOM05D003809 ORTHO05D003935 2.9e-33 146.4 135 48.9
Eucgr.K02988 Eucalyptus grandis HOM05D003809 ORTHO05D003935 3.8e-33 146.0 151 43.7
FvH4_3g38430 Fragaria vesca HOM05D003809 ORTHO05D003935 3.8e-33 146.0 116 48.3
Sp6g40590 Schrenkiella parvula HOM05D003809 ORTHO05D003935 3.8e-33 146.0 159 45.3
vmacro08854 Vaccinium macrocarpon HOM05D003809 ORTHO05D003935 3.8e-33 146.0 120 52.5
BcaNung06532 Brassica carinata HOM05D003809 ORTHO05D003935 4.9e-33 145.6 150 43.3
C03p00540 Brassica napus HOM05D003809 ORTHO05D003935 4.9e-33 145.6 176 39.2
DCAR_018710 Daucus carota HOM05D003809 ORTHO05D003935 4.9e-33 145.6 145 44.1
Prupe.6G058700 Prunus persica HOM05D003809 ORTHO05D003935 4.9e-33 145.6 108 53.7
CARHR211600 Cardamine hirsuta HOM05D003809 ORTHO05D003935 6.4e-33 145.2 142 47.2
FAN11G1208 Fragaria x ananassa HOM05D003809 ORTHO05D003935 6.4e-33 145.2 125 47.2
FAN21G3156 Fragaria x ananassa HOM05D003809 ORTHO05D003935 6.4e-33 145.2 139 43.9
FAN25G1218 Fragaria x ananassa HOM05D000001 ORTHO05D000003 6.4e-33 145.2 139 43.9
HanXRQChr01g0007011 Helianthus annuus HOM05D003809 ORTHO05D003935 8.4e-33 144.8 187 36.4
FAN16G0765 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.1e-32 144.4 139 43.9
Sed0014073 Sechium edule HOM05D003809 ORTHO05D003935 1.1e-32 144.4 172 43.6
Potri.009G044800 Populus trichocarpa HOM05D003809 ORTHO05D003935 3.2e-32 142.9 156 42.9
Aqoxy4G02610 Aquilegia oxysepala HOM05D003809 ORTHO05D003935 9.3e-32 141.4 114 52.6
CAN.G772.1 Capsicum annuum HOM05D003809 ORTHO05D003935 9.3e-32 141.4 119 50.4
DCAR_015432 Daucus carota HOM05D003809 ORTHO05D003935 9.3e-32 141.4 155 43.2
Nitab4.5_0008420g0020 Nicotiana tabacum HOM05D003809 ORTHO05D003935 9.3e-32 141.4 119 52.1
Lj2A76T85 Lonicera japonica HOM05D003809 ORTHO05D003935 1.2e-31 141.0 112 52.7
Nitab4.5_0000335g0110 Nicotiana tabacum HOM05D003809 ORTHO05D003935 1.2e-31 141.0 151 44.4
Sed0009856 Sechium edule HOM05D003809 ORTHO05D003935 2.1e-31 140.2 173 39.3
Sopen09g007230 Solanum pennellii HOM05D003809 ORTHO05D003935 2.7e-31 139.8 111 52.3
Peaxi162Scf00141g00342 Petunia axillaris HOM05D003809 ORTHO05D003935 3.5e-31 139.4 118 51.7
THA.LOC104816652 Tarenaya hassleriana HOM05D003809 ORTHO05D003935 4.6e-31 139.0 181 39.2
Solyc09g014400.3 Solanum lycopersicum HOM05D003809 ORTHO05D003935 1.8e-30 137.1 109 52.3
SGA_v2.0_scaffold240G44100 Striga asiatica HOM05D003809 ORTHO05D003935 3.0e-30 136.3 159 41.5
SalBow4G1747 Salvia bowleyana HOM05D003809 ORTHO05D003935 3.9e-30 136.0 134 46.3
CDE04G0185 Ceratophyllum demersum HOM05D003809 ORTHO05D003935 5.1e-30 135.6 130 49.2
MSTRG.10226 Avicennia marina HOM05D003809 ORTHO05D003935 6.7e-30 135.2 151 41.7
CDE03G0216 Ceratophyllum demersum HOM05D003809 ORTHO05D003935 6.7e-30 135.2 126 46.0
Hund04870 Selenicereus undatus HOM05D003809 ORTHO05D003935 1.9e-29 133.7 145 44.1
Sc06g0006210 Simmondsia chinensis HOM05D003809 ORTHO05D003935 1.3e-28 131.0 126 42.9
PGR004G0704 Punica granatum HOM05D003809 ORTHO05D003935 2.8e-28 129.8 110 52.7
ECA248G2658 Erigeron canadensis HOM05D003809 ORTHO05D003935 1.4e-27 127.5 113 47.8
HPP92_019882 Vanilla planifolia HOM05D003809 ORTHO05D003935 1.2e-26 124.4 100 47.0
PSO566G0296 Papaver somniferum HOM05D003809 ORTHO05D003935 1.5e-26 124.0 105 49.5
PSO566G0209 Papaver somniferum HOM05D003809 ORTHO05D003935 2.0e-26 123.6 105 48.6
SEGI_38034 Sequoiadendron giganteum HOM05D003809 ORTHO05D003935 2.6e-26 123.2 151 39.1
ECA246G4062 Erigeron canadensis HOM05D000041 ORTHO05D000452 3.4e-26 122.9 109 45.9
PSO566G0289 Papaver somniferum HOM05D003809 ORTHO05D003935 3.4e-26 122.9 142 42.3
SEGI_39495 Sequoiadendron giganteum HOM05D003809 ORTHO05D003935 3.4e-26 122.9 116 47.4
Os01g0856900 Oryza sativa ssp. japonica HOM05D003809 ORTHO05D003935 7.6e-26 121.7 143 41.3
ATR0618G237 Amborella trichopoda HOM05D003809 ORTHO05D003935 1.3e-25 120.9 106 48.1
Migut.L02004 Erythranthe guttata HOM05D003809 ORTHO05D003935 2.9e-25 119.8 146 41.1
Nn2g11448 Nelumbo nucifera HOM05D003809 ORTHO05D003935 1.9e-24 117.1 75 66.7
Pp3c6_22980 Physcomitrium patens HOM05D003809 ORTHO05D003935 3.2e-24 116.3 153 37.9
PSO566G0059 Papaver somniferum HOM05D003809 ORTHO05D003935 1.2e-23 114.4 99 51.5
Os05g0446900 Oryza sativa ssp. japonica HOM05D003809 ORTHO05D003935 1.6e-23 114.0 111 44.1
Zm00001eb367050 Zea mays HOM05D003809 ORTHO05D003935 7.9e-23 111.7 174 34.5
Zm00001eb289050 Zea mays HOM05D003809 ORTHO05D003935 1.3e-22 110.9 135 38.5
Pp3c16_3300 Physcomitrium patens HOM05D003809 ORTHO05D003935 5.1e-22 109.0 105 44.8
AagrBONN_evm.TU.Sc2ySwM_344.3507 Anthoceros agrestis HOM05D003809 ORTHO05D003935 2.5e-21 106.7 110 42.7
SMO142G0031 Selaginella moellendorffii HOM05D003809 ORTHO05D003935 7.4e-21 105.1 113 45.1
SMO358G0668 Selaginella moellendorffii HOM05D003809 ORTHO05D003935 7.4e-21 105.1 113 45.1
unitig_37.g12663 Utricularia gibba HOM05D003809 ORTHO05D003935 2.1e-20 103.6 110 40.9
Mapoly0033s0050 Marchantia polymorpha HOM05D003809 ORTHO05D003935 1.4e-19 100.9 98 45.9
CSS0006268 Camellia sinensis var. sinensis HOM05D003809 ORTHO05D003935 2.4e-19 100.1 118 42.4
SMO118G0122 Selaginella moellendorffii HOM05D003809 ORTHO05D003935 4.0e-19 99.4 131 33.6
Pp3c23_18810 Physcomitrium patens HOM05D028458 ORTHO05D003935 1.5e-18 97.4 119 39.5
Haze_20987 Corylus avellana HOM05D003809 ORTHO05D003935 3.5e-15 86.3 54 61.1
Cre17.g719900 Chlamydomonas reinhardtii HOM05D001235 ORTHO05D005684 1.0e-14 84.7 125 31.2
Cre03.g158050 Chlamydomonas reinhardtii HOM05D000808 ORTHO05D003935 1.1e-11 74.7 104 27.9
Dinv03585 Davidia involucrata HOM05D003809 ORTHO05D003935 1.1e-11 74.7 93 46.2
Ah.08g221090 Amaranthus hybridus HOM05D003809 ORTHO05D003935 5.3e-11 72.4 65 50.8
Cre06.g269650 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 3.4e-10 69.7 103 29.1
Cre12.g551200 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 4.5e-10 69.3 90 35.6
MCO16G448 Micromonas commoda HOM05D003809 ORTHO05D003935 5.9e-10 68.9 149 28.9
MCO03G388 Micromonas commoda HOM05D003809 ORTHO05D003935 7.7e-10 68.6 117 26.5
MCO16G173 Micromonas commoda HOM05D003809 ORTHO05D003935 1.0e-09 68.2 147 26.5
PRCOL_00004061 Prasinoderma coloniale HOM05D003809 ORTHO05D003935 1.7e-09 67.4 121 27.3
Cre03.g183300 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 2.2e-09 67.0 113 33.6
Cre10.g450500 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 2.2e-09 67.0 99 30.3
MCO03G441 Micromonas commoda HOM05D022748 ORTHO05D003935 2.2e-09 67.0 112 28.6
Rhsim04G0129000 Rhododendron simsii HOM05D003809 ORTHO05D003935 2.9e-09 66.6 42 59.5
Sc06g0006330 Simmondsia chinensis HOM05D003809 ORTHO05D003935 2.5e-08 63.5 53 47.2
Cre17.g703000 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 4.2e-08 62.8 76 35.5
HPP92_019874 Vanilla planifolia HOM05D058214 ORTHO05D003935 7.2e-08 62.0 56 42.9
Cre12.g492750 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D138784 9.4e-08 61.6 76 31.6
Mapoly0096s0069 Marchantia polymorpha HOM05D001235 ORTHO05D005684 1.0e-06 58.2 126 26.2
Cre09.g407501 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 3.0e-06 56.6 130 26.2
Ca_11427_v3 Cicer arietinum L. HOM05D001235 ORTHO05D005684 8.8e-06 55.1 182 24.7
Ca_29863_v3 Cicer arietinum L. HOM05D001235 ORTHO05D005684 8.8e-06 55.1 182 24.7
Pp3c14_19150 Physcomitrium patens HOM05D001235 ORTHO05D005684 8.8e-06 55.1 80 28.8


User provided reference genes

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