Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G082900 Glycine max HOM05D004958 ORTHO05D005983 2.9e-124 448.7 252 100.0
Glyma.03G021100 Glycine max HOM05D004958 ORTHO05D005983 1.6e-111 406.4 271 87.1
VMungo0331G1538 Vigna mungo HOM05D004958 ORTHO05D005983 2.4e-107 392.5 249 83.5
Phvul.010G049100 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 1.0e-105 387.1 240 85.0
Phvul.009G080900 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 1.1e-104 383.6 240 84.6
Lalb_Chr07g0189581 Lupinus albus HOM05D004958 ORTHO05D005983 1.9e-99 366.3 241 84.6
Lalb_Chr12g0208371 Lupinus albus HOM05D004958 ORTHO05D005983 1.8e-97 359.8 249 80.7
Lalb_Chr12g0208451 Lupinus albus HOM05D004958 ORTHO05D005983 1.8e-97 359.8 249 80.7
Medtr5g058150 Medicago truncatula HOM05D004958 ORTHO05D005983 2.3e-97 359.4 247 80.6
Psat0s646g0120 Pisum sativum HOM05D004958 ORTHO05D005983 3.1e-94 349.0 247 79.8
Lj3g0000848 Lotus japonicus HOM05D004958 ORTHO05D005983 5.3e-94 348.2 249 80.3
Ca_05359_v3 Cicer arietinum L. HOM05D004958 ORTHO05D005983 3.4e-93 345.5 247 79.4
arahy.Tifrunner.gnm1.ann1.BCQ50G Arachis hypogaea HOM05D004958 ORTHO05D005983 5.8e-93 344.7 252 82.5
Ca_24641_v3 Cicer arietinum L. HOM05D004958 ORTHO05D005983 9.9e-93 344.0 247 77.7
TPR.G27805 Trifolium pratense HOM05D004958 ORTHO05D005983 7.1e-91 337.8 250 76.0
GSVIVG01019856001 Vitis vinifera HOM05D004958 ORTHO05D005983 2.4e-86 322.8 213 77.0
Manes.01G066700 Manihot esculenta HOM05D004958 ORTHO05D005983 2.9e-84 315.8 212 74.5
Medtr6g075250 Medicago truncatula HOM05D004958 ORTHO05D005983 8.4e-84 314.3 245 70.2
CSS0008368 Camellia sinensis var. sinensis HOM05D004958 ORTHO05D005983 3.0e-81 305.8 249 64.3
Eucgr.D01919 Eucalyptus grandis HOM05D004958 ORTHO05D005983 3.9e-81 305.4 243 65.8
RcHm_v2.0_Chr5g0045251 Rosa chinensis HOM05D004958 ORTHO05D005983 8.7e-81 304.3 213 72.3
Duzib068G0251 Durio zibethinus HOM05D004958 ORTHO05D005983 1.5e-80 303.5 260 68.8
Hma1.2p1_0514F.1_g170070 Hydrangea macrophylla HOM05D004958 ORTHO05D005983 9.7e-80 300.8 235 67.7
Nn6g34244 Nelumbo nucifera HOM05D004958 ORTHO05D005983 1.3e-79 300.4 249 66.3
PGR031G1609 Punica granatum HOM05D004958 ORTHO05D005983 1.3e-79 300.4 232 70.3
Thecc.03G271700 Theobroma cacao HOM05D004958 ORTHO05D005983 1.3e-79 300.4 212 72.6
Potri.001G110000 Populus trichocarpa HOM05D004958 ORTHO05D005983 2.2e-79 299.7 236 66.9
Actinidia27408 Actinidia chinensis HOM05D004958 ORTHO05D005983 3.7e-79 298.9 244 66.8
Hund11528 Selenicereus undatus HOM05D004958 ORTHO05D005983 1.8e-78 296.6 245 67.3
Gohir.D11G021000 Gossypium hirsutum HOM05D004958 ORTHO05D005983 3.1e-78 295.8 207 72.5
Sed0017231 Sechium edule HOM05D004958 ORTHO05D005983 4.1e-78 295.4 249 62.2
ClCG08G000800 Citrullus lanatus HOM05D004958 ORTHO05D005983 5.3e-78 295.0 249 63.1
FvH4_7g07500 Fragaria vesca HOM05D004958 ORTHO05D005983 5.3e-78 295.0 216 69.9
Ciclev10021851m.g Citrus clementina HOM05D004958 ORTHO05D005983 6.9e-78 294.7 207 71.0
DCAR_008420 Daucus carota HOM05D004958 ORTHO05D005983 6.9e-78 294.7 212 68.9
Gorai.007G022300 Gossypium raimondii HOM05D004958 ORTHO05D005983 6.9e-78 294.7 207 72.0
Lsat_1_v5_gn_6_87641 Lactuca sativa HOM05D004958 ORTHO05D005983 9.0e-78 294.3 212 70.3
Gohir.A11G021300 Gossypium hirsutum HOM05D004958 ORTHO05D005983 2.0e-77 293.1 207 72.0
Prupe.6G131000 Prunus persica HOM05D004958 ORTHO05D005983 2.6e-77 292.7 249 67.1
Atru.chr12.1358 Acer truncatum HOM05D004958 ORTHO05D005983 4.5e-77 292.0 244 63.1
Nitab4.5_0002553g0040 Nicotiana tabacum HOM05D004958 ORTHO05D005983 4.5e-77 292.0 212 67.5
FAN06G2073 Fragaria x ananassa HOM05D004958 ORTHO05D005983 1.7e-76 290.0 216 69.0
FAN10G1939 Fragaria x ananassa HOM05D004958 ORTHO05D005983 1.7e-76 290.0 216 69.0
FvH4_3g25070 Fragaria vesca HOM05D000097 ORTHO05D005983 2.2e-76 289.7 215 70.2
FAN03G3010 Fragaria x ananassa HOM05D004958 ORTHO05D005983 5.0e-76 288.5 216 69.0
Nitab4.5_0001586g0220 Nicotiana tabacum HOM05D004958 ORTHO05D005983 6.5e-76 288.1 249 64.3
FAN01G2068 Fragaria x ananassa HOM05D004958 ORTHO05D005983 1.9e-75 286.6 208 70.2
Migut.E01294 Erythranthe guttata HOM05D004958 ORTHO05D005983 4.2e-75 285.4 239 61.9
Nitab4.5_0003994g0020 Nicotiana tabacum HOM05D004958 ORTHO05D005983 4.2e-75 285.4 249 62.2
TWI81G1011 Tripterygium wilfordii HOM05D004958 ORTHO05D005983 4.2e-75 285.4 256 66.4
MELO3C019927.2 Cucumis melo HOM05D004958 ORTHO05D005983 5.5e-75 285.0 249 61.0
Nitab4.5_0003113g0020 Nicotiana tabacum HOM05D004958 ORTHO05D005983 2.7e-74 282.7 243 59.3
PGSC0003DMG400026921 Solanum tuberosum HOM05D004958 ORTHO05D005983 6.1e-74 281.6 249 59.8
MBI11_g40802_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 7.9e-74 281.2 209 70.3
Solyc06g073120.4 Solanum lycopersicum HOM05D004958 ORTHO05D005983 1.4e-73 280.4 247 59.9
Prupe.8G125000 Prunus persica HOM05D004958 ORTHO05D005983 1.8e-73 280.0 222 67.6
Sopen06g029470 Solanum pennellii HOM05D004958 ORTHO05D005983 1.8e-73 280.0 249 59.4
MSTRG.1893 Avicennia marina HOM05D004958 ORTHO05D005983 3.9e-73 278.9 244 61.1
Peaxi162Scf01294g00034 Petunia axillaris HOM05D004958 ORTHO05D005983 6.7e-73 278.1 210 66.2
CAN.G65.155 Capsicum annuum HOM05D004958 ORTHO05D005983 1.1e-72 277.3 212 65.6
SGA_v2.0_scaffold196G40881 Striga asiatica HOM05D004958 ORTHO05D005983 2.0e-72 276.6 207 67.1
MD03G1146200 Malus domestica HOM05D004958 ORTHO05D005983 1.7e-71 273.5 239 63.2
CsaV3_5G039810 Cucumis sativus L. HOM05D004958 ORTHO05D005983 2.2e-71 273.1 276 55.1
Ah.12g057600 Amaranthus hybridus HOM05D004958 ORTHO05D005983 1.4e-70 270.4 244 58.2
COL.COLO4_09338 Corchorus olitorius HOM05D001926 ORTHO05D002121 2.4e-70 269.6 212 67.9
ATR0757G162 Amborella trichopoda HOM05D004958 ORTHO05D005983 4.1e-70 268.9 209 67.5
vmacro13919 Vaccinium macrocarpon HOM05D004958 ORTHO05D005983 5.3e-70 268.5 246 60.6
MBI11_g41127_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.5e-69 266.9 205 68.3
ECA240G3664 Erigeron canadensis HOM05D004958 ORTHO05D005983 5.9e-69 265.0 210 63.8
HPP92_003759 Vanilla planifolia HOM05D004958 ORTHO05D005983 1.1e-67 260.8 208 63.5
PSO782G2900 Papaver somniferum HOM05D004958 ORTHO05D005983 1.9e-67 260.0 209 65.1
EL10Ac5g12729 Beta vulgaris HOM05D004958 ORTHO05D005983 3.2e-67 259.2 215 65.1
FAN11G1832 Fragaria x ananassa HOM05D000097 ORTHO05D005983 4.2e-67 258.8 215 64.7
PSO478G4928 Papaver somniferum HOM05D004958 ORTHO05D005983 5.5e-67 258.5 209 65.1
MBI11_g31491_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.6e-66 256.9 226 63.3
Aqoxy5G02043 Aquilegia oxysepala HOM05D004958 ORTHO05D005983 2.1e-66 256.5 248 58.9
THA.LOC104823571 Tarenaya hassleriana HOM05D004958 ORTHO05D005983 3.6e-66 255.8 203 63.5
Os09g0525200 Oryza sativa ssp. japonica HOM05D004958 ORTHO05D005983 2.6e-64 249.6 213 60.1
AL1G24110 Arabidopsis lyrata HOM05D004958 ORTHO05D005983 2.2e-63 246.5 237 63.3
SEGI_09748 Sequoiadendron giganteum HOM05D004958 ORTHO05D005983 7.0e-62 241.5 207 59.9
AT1G12650 Arabidopsis thaliana HOM05D004958 ORTHO05D005983 5.9e-61 238.4 239 61.5
Cc08_g14020 Coffea canephora HOM05D004958 ORTHO05D005983 1.0e-60 237.7 208 62.0
Rhsim07G0094600 Rhododendron simsii HOM05D004958 ORTHO05D005983 5.0e-60 235.3 218 59.6
unitig_899.g14861 Utricularia gibba HOM05D004958 ORTHO05D005983 8.5e-60 234.6 239 55.2
Sp1g11240 Schrenkiella parvula HOM05D004958 ORTHO05D005983 1.1e-59 234.2 205 60.5
SalBow7G2511 Salvia bowleyana HOM05D004958 ORTHO05D005983 1.4e-59 233.8 179 67.0
CARHR012940 Cardamine hirsuta HOM05D004958 ORTHO05D005983 2.5e-59 233.0 205 58.0
Carub.0001s1234 Capsella rubella HOM05D004958 ORTHO05D005983 9.4e-59 231.1 232 54.7
Haze_20475 Corylus avellana HOM05D004958 ORTHO05D005983 1.6e-58 230.3 313 49.5
QL12p017317 Quercus lobata HOM05D004958 ORTHO05D005983 2.1e-58 229.9 317 47.9
Cfa012106 Carpinus fangiana HOM05D004958 ORTHO05D005983 3.6e-58 229.2 260 49.6
Pp3c15_19260 Physcomitrium patens HOM05D004958 ORTHO05D005983 3.6e-58 229.2 208 58.2
vmacro12796 Vaccinium macrocarpon HOM05D004958 ORTHO05D005983 6.1e-58 228.4 307 46.9
Zm00001eb103160 Zea mays HOM05D004958 ORTHO05D005983 8.0e-58 228.0 213 57.3
BolC8t52265H Brassica oleracea HOM05D004958 ORTHO05D005983 1.0e-57 227.6 180 65.6
MBI04_g02075_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.4e-57 227.3 253 57.7
BraA09t41722Z Brassica rapa HOM05D004958 ORTHO05D005983 2.3e-57 226.5 180 65.0
BcaB08g34261 Brassica carinata HOM05D004958 ORTHO05D005983 3.0e-57 226.1 183 64.5
A09p63740 Brassica napus HOM05D004958 ORTHO05D005983 5.2e-57 225.3 180 64.4
Phvul.009G247000 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 4.4e-56 222.2 252 57.1
MBI11_g47761_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.7e-55 220.3 171 68.4
AUR62017291 Chenopodium quinoa HOM05D004958 ORTHO05D005983 2.8e-55 219.5 172 65.1
MD11G1165500 Malus domestica HOM05D004958 ORTHO05D005983 3.7e-55 219.2 278 48.2
Mapoly0004s0034 Marchantia polymorpha HOM05D004958 ORTHO05D005983 6.3e-55 218.4 208 54.3
C08p47240 Brassica napus HOM05D004958 ORTHO05D005983 2.4e-54 216.5 181 63.5
CiPaw.12G097900 Carya illinoinensis HOM05D004958 ORTHO05D005983 3.1e-54 216.1 289 51.6
MBI11_g41124_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 4.1e-54 215.7 164 68.9
AagrBONN_evm.TU.Sc2ySwM_362.2285 Anthoceros agrestis HOM05D004958 ORTHO05D005983 1.2e-53 214.2 208 53.4
SMO228G0196 Selaginella moellendorffii HOM05D004958 ORTHO05D005983 1.6e-53 213.8 203 57.1
BcaC07g41688 Brassica carinata HOM05D004958 ORTHO05D005983 5.9e-53 211.8 172 64.5
Aa31LG1G2030 Aethionema arabicum HOM05D004958 ORTHO05D005983 2.9e-52 209.5 202 56.4
FAN21G2287 Fragaria x ananassa HOM05D000097 ORTHO05D000041 1.1e-51 207.6 170 65.3
Sc22g0000230 Simmondsia chinensis HOM05D004958 ORTHO05D005983 1.5e-51 207.2 162 66.7
Thhalv10008688m.g Eutrema salsugineum HOM05D004958 ORTHO05D005983 4.2e-51 205.7 211 54.5
Sabra01G0083200 Salix brachista HOM05D004958 ORTHO05D005983 1.2e-50 204.1 231 51.9
AUR62010651 Chenopodium quinoa HOM05D004958 ORTHO05D005983 4.0e-49 199.1 213 53.5
Atru.chr12.1359 Acer truncatum HOM05D004958 ORTHO05D005983 1.3e-47 194.1 244 47.5
Eucgr.L01965 Eucalyptus grandis HOM05D004958 ORTHO05D005983 3.8e-44 182.6 157 61.1
Dinv39007 Davidia involucrata HOM05D004958 ORTHO05D005983 3.2e-43 179.5 124 71.8
CDE02G4341 Ceratophyllum demersum HOM05D004958 ORTHO05D005983 1.6e-37 160.6 128 65.6
CBR_g12215 Chara braunii HOM05D004958 ORTHO05D005983 3.6e-34 149.4 167 48.5
MBI11_g32389_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.0e-33 147.9 223 45.3
Cre09.g401663 Chlamydomonas reinhardtii HOM05D004958 ORTHO05D005983 4.0e-33 146.0 222 41.0
Zm00001eb297680 Zea mays HOM05D004958 ORTHO05D005983 1.5e-27 127.5 94 64.9
Haze_08945 Corylus avellana HOM05D004958 ORTHO05D005983 3.6e-26 122.9 111 56.8
TAR636G1581 Trochodendron aralioides HOM05D004958 ORTHO05D005983 8.3e-23 111.7 80 68.8
FvH4_3g24970 Fragaria vesca HOM05D004958 ORTHO05D005983 3.2e-22 109.8 82 73.2
PRCOL_00004135 Prasinoderma coloniale HOM05D004958 ORTHO05D005983 4.1e-22 109.4 190 35.3
Aqoxy60s002 Aquilegia oxysepala HOM05D004958 ORTHO05D005983 7.0e-22 108.6 126 52.4
SEGI_22925 Sequoiadendron giganteum HOM05D004958 ORTHO05D005983 2.0e-21 107.1 83 67.5
FAN11G3948 Fragaria x ananassa HOM05D004958 ORTHO05D005983 1.0e-20 104.8 214 38.3
MBI11_g12655_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.1e-19 101.3 143 46.2
A09p63730 Brassica napus HOM05D007482 ORTHO05D003038 8.0e-18 95.1 73 65.8
QL02p071798 Quercus lobata HOM05D004958 ORTHO05D005983 2.3e-17 93.6 181 37.6
Cfa023436 Carpinus fangiana HOM05D004958 ORTHO05D005983 8.9e-17 91.7 180 31.7
MBI11_g47763_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 3.7e-15 86.3 178 38.2
Cpa.g.sc53.73 Carica papaya HOM05D004958 ORTHO05D005983 6.4e-15 85.5 49 81.6
Zm00001eb297670 Zea mays HOM05D004958 ORTHO05D005983 3.5e-13 79.7 59 64.4
Zm00001eb199630 Zea mays HOM05D004958 ORTHO05D005983 3.3e-11 73.2 56 62.5
Oeu011662.1 Olea europaea HOM05D004958 ORTHO05D005983 1.2e-10 71.2 73 56.2
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 4.7e-10 69.3 55 63.6
Aqoxy107s001 Aquilegia oxysepala HOM05D004958 ORTHO05D005983 6.2e-10 68.9 73 58.9
BcaB03g13174 Brassica carinata HOM05D004958 ORTHO05D005983 2.3e-09 67.0 45 73.3
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 2.3e-09 67.0 55 61.8
Lj2g0009320 Lotus japonicus HOM05D004958 ORTHO05D236879 4.4e-08 62.8 70 51.4
C08p47230 Brassica napus HOM05D007482 ORTHO05D003038 1.4e-06 57.8 97 38.1
Zm00001eb045710 Zea mays HOM05D004958 ORTHO05D005983 1.9e-06 57.4 37 70.3
Zm00001eb118520 Zea mays HOM05D004958 ORTHO05D005983 3.2e-06 56.6 51 58.8
C08p15580 Brassica napus HOM05D004958 ORTHO05D005983 7.1e-06 55.5 85 43.5
FAN15G1616 Fragaria x ananassa HOM05D004958 ORTHO05D005983 7.1e-06 55.5 47 57.4


User provided reference genes

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